Wall clock time and date at job start Tue Mar 31 2020 13:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99721 * 186.41920 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46500 * 114.26822 * 139.79275 * 11 10 9 13 13 C 1.34777 * 120.00034 * 111.47440 * 12 11 10 14 14 O 1.21607 * 119.99989 * 359.97438 * 13 12 11 15 15 C 1.47458 * 120.00309 * 179.97438 * 13 12 11 16 16 C 1.39082 * 120.78540 * 0.02562 * 15 13 12 17 17 C 1.39192 * 121.95809 * 179.97438 * 16 15 13 18 18 C 1.36427 * 120.59556 * 0.02562 * 17 16 15 19 19 C 1.39171 * 118.35350 * 359.97295 * 18 17 16 20 20 C 1.39159 * 114.53928 * 180.02562 * 19 18 17 21 21 C 1.36175 * 118.00899 * 179.97438 * 20 19 18 22 22 C 1.39612 * 120.31681 * 0.03714 * 21 20 19 23 23 C 1.36641 * 122.24373 * 359.97438 * 22 21 20 24 24 C 1.40071 * 118.85942 * 359.69597 * 23 22 21 25 25 C 1.50925 * 107.43508 * 359.97438 * 20 19 18 26 26 C 1.51005 * 134.24941 * 179.97438 * 18 17 16 27 27 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 28 28 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 29 29 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 30 30 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 31 31 H 1.09008 * 114.39164 * 272.67254 * 11 10 9 32 32 H 0.96996 * 119.99999 * 291.47680 * 12 11 10 33 33 H 1.08000 * 119.02675 * 0.02562 * 16 15 13 34 34 H 1.08004 * 119.70583 * 179.97438 * 17 16 15 35 35 H 1.07994 * 119.84328 * 180.02562 * 21 20 19 36 36 H 1.08000 * 118.88221 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.57123 * 179.97438 * 23 22 21 38 38 H 1.09001 * 110.27581 * 241.02951 * 25 20 19 39 39 H 1.08997 * 110.27600 * 118.95768 * 25 20 19 40 40 H 1.08992 * 110.27987 * 298.94716 * 26 18 17 41 41 H 1.09004 * 110.27321 * 61.02716 * 26 18 17 42 42 H 1.08996 * 113.46819 * 321.85844 * 27 9 7 43 43 H 1.09006 * 113.46873 * 92.30541 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 -0.2832 -5.2810 -0.6718 13 6 -0.9854 -5.9188 -1.6292 14 8 -0.9755 -5.5007 -2.7710 15 6 -1.7658 -7.1237 -1.2920 16 6 -1.7892 -7.6158 0.0086 17 6 -2.5177 -8.7505 0.3540 18 6 -3.2408 -9.4243 -0.5864 19 6 -3.2308 -8.9482 -1.8941 20 6 -3.9945 -9.6942 -2.7866 21 6 -4.0352 -9.2904 -4.0865 22 6 -3.3256 -8.1598 -4.4957 23 6 -2.5720 -7.4190 -3.6294 24 6 -2.5148 -7.8037 -2.2838 25 6 -4.6143 -10.8310 -2.0111 26 6 -4.1176 -10.6534 -0.5601 27 6 1.6717 -3.8136 -0.0623 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6458 -2.9419 0.5050 30 1 -0.5617 -2.1435 -1.1235 31 1 0.7431 -4.0157 -2.0656 32 1 -0.2914 -5.6143 0.2390 33 1 -1.2261 -7.1019 0.7736 34 1 -2.5098 -9.1012 1.3755 35 1 -4.6189 -9.8474 -4.8043 36 1 -3.3739 -7.8605 -5.5323 37 1 -2.0335 -6.5491 -3.9754 38 1 -4.2792 -11.7880 -2.4110 39 1 -5.7017 -10.7652 -2.0486 40 1 -3.5392 -11.5235 -0.2497 41 1 -4.9620 -10.5008 0.1122 42 1 2.6415 -4.0509 -0.4996 43 1 1.5398 -4.2434 0.9307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030646745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:11 Heat of formation + Delta-G solvation = 77.309382 kcal Electronic energy + Delta-G solvation = -25792.885688 eV Core-core repulsion = 22190.745311 eV Total energy + Delta-G solvation = -3602.140377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49393 -39.55264 -37.77781 -36.56242 -35.68854 -33.64745 -31.94718 -30.61626 -29.93108 -29.20642 -27.46401 -25.30158 -24.64923 -23.53012 -23.04029 -22.04347 -21.56069 -20.17934 -19.60389 -17.73324 -16.93400 -16.77887 -16.41330 -15.76997 -15.70372 -15.41281 -14.97529 -14.63704 -14.55267 -14.36652 -13.87579 -13.45219 -13.12406 -13.06311 -12.87901 -12.65582 -12.41965 -12.06839 -11.95770 -11.88974 -11.51350 -11.46953 -11.41755 -11.01243 -11.00258 -10.95832 -10.78577 -10.45495 -10.11068 -9.79723 -9.48023 -9.41716 -8.81828 -8.77732 -8.46340 -7.81085 -6.95846 -5.82163 -3.14821 0.14534 0.90957 1.68978 2.64386 3.29992 3.34970 3.40053 3.44481 3.46174 3.95368 4.02862 4.23705 4.44057 4.64649 4.69561 4.73930 4.85190 4.92983 5.00003 5.10595 5.22660 5.28027 5.32422 5.39787 5.42185 5.44966 5.53886 5.61711 5.63085 5.82465 5.92404 5.98506 6.05029 6.13149 6.18975 6.22818 6.36979 6.43711 6.51007 6.53303 6.67703 6.74784 6.92419 7.15711 7.31761 7.48610 7.81336 7.91713 8.47944 8.98558 9.65171 10.56945 11.36188 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.002505 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.470214 B =11173.152615 C =11726.510900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.222 4.222 8 H 0.084 0.916 9 N -0.603 5.603 10 C 0.152 3.848 11 C 0.086 3.914 12 N -0.705 5.705 13 C 0.560 3.440 14 O -0.537 6.537 15 C -0.120 4.120 16 C -0.070 4.070 17 C -0.117 4.117 18 C -0.057 4.057 19 C -0.088 4.088 20 C -0.088 4.088 21 C -0.104 4.104 22 C -0.116 4.116 23 C -0.103 4.103 24 C -0.004 4.004 25 C -0.075 4.075 26 C -0.079 4.079 27 C 0.110 3.890 28 H 0.255 0.745 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.396 0.604 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.164 0.836 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.586 -24.809 -1.833 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.349 4.349 8 H 0.102 0.898 9 N -0.329 5.329 10 C 0.025 3.975 11 C -0.019 4.019 12 N -0.355 5.355 13 C 0.347 3.653 14 O -0.416 6.416 15 C -0.123 4.123 16 C -0.089 4.089 17 C -0.135 4.135 18 C -0.058 4.058 19 C -0.088 4.088 20 C -0.088 4.088 21 C -0.122 4.122 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.004 4.004 25 C -0.112 4.112 26 C -0.116 4.116 27 C -0.017 4.017 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.231 0.769 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.181 0.819 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.499 -24.083 -2.625 26.021 hybrid contribution 0.377 0.851 0.738 1.188 sum -9.123 -23.232 -1.887 25.030 Atomic orbital electron populations 1.69860 1.05109 1.25620 1.55616 1.24873 0.95705 0.97800 1.01907 0.86061 0.78733 0.83199 0.77507 1.21547 1.20395 1.21493 1.18908 0.90413 0.81143 1.44464 0.89845 1.45352 1.05652 0.99162 1.82704 1.22454 0.88664 0.89573 0.96803 1.23728 0.93466 0.83846 1.00900 1.45944 1.48784 1.29223 1.11513 1.18020 0.79228 0.82723 0.85332 1.90636 1.63711 1.67146 1.20068 1.20064 1.01041 0.97233 0.93967 1.21375 0.97110 0.95254 0.95157 1.20160 0.98271 0.95703 0.99358 1.20184 0.96223 0.96202 0.93166 1.18236 0.99293 0.96128 0.95147 1.19903 0.98198 0.97017 0.93727 1.20307 1.00153 0.97161 0.94561 1.21045 0.97131 0.95010 1.00198 1.21943 0.97722 1.00587 0.91758 1.17531 0.95499 0.93650 0.93765 1.20905 1.00653 0.96638 0.93020 1.20998 0.98283 0.95142 0.97183 1.22713 0.95925 0.87333 0.95759 0.93488 0.95131 0.91682 0.86396 0.76898 0.85249 0.85283 0.86078 0.85834 0.81928 0.89688 0.89666 0.89380 0.89345 0.93509 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.61 11.81 55.49 0.66 -26.96 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.92 22.21 29.56 -169.99 -5.02 17.19 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.27 10.73 -15.06 -0.16 -6.43 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 N -0.60 -15.60 3.76 -184.62 -0.69 -16.30 16 10 C 0.15 3.65 7.05 -8.37 -0.06 3.59 16 11 C 0.09 1.67 4.62 -67.68 -0.31 1.36 16 12 N -0.70 -11.17 5.35 -54.55 -0.29 -11.46 16 13 C 0.56 9.37 7.76 -12.50 -0.10 9.27 16 14 O -0.54 -10.58 13.33 5.27 0.07 -10.51 16 15 C -0.12 -1.71 5.92 -104.52 -0.62 -2.33 16 16 C -0.07 -0.78 9.51 -38.91 -0.37 -1.15 16 17 C -0.12 -1.13 9.97 -39.88 -0.40 -1.53 16 18 C -0.06 -0.58 6.37 -104.78 -0.67 -1.25 16 19 C -0.09 -1.09 5.62 -108.35 -0.61 -1.70 16 20 C -0.09 -0.93 6.38 -104.91 -0.67 -1.60 16 21 C -0.10 -1.06 10.00 -39.81 -0.40 -1.46 16 22 C -0.12 -1.35 9.90 -39.65 -0.39 -1.75 16 23 C -0.10 -1.48 9.35 -39.47 -0.37 -1.85 16 24 C 0.00 -0.05 5.75 -107.04 -0.62 -0.67 16 25 C -0.08 -0.53 6.90 -27.04 -0.19 -0.71 16 26 C -0.08 -0.54 6.90 -27.00 -0.19 -0.73 16 27 C 0.11 2.22 8.44 -8.51 -0.07 2.14 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.77 7.57 -51.93 -0.39 1.37 16 31 H 0.12 2.48 7.45 -51.92 -0.39 2.10 16 32 H 0.40 5.08 6.81 -40.82 -0.28 4.80 16 33 H 0.13 1.14 6.38 -52.49 -0.33 0.81 16 34 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.16 2.62 5.35 -52.49 -0.28 2.34 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -34.21 352.66 -11.70 -45.91 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.45 Total: 3.84 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -6.28 Total: -7.03 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.33 Total: -54.72 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.21 -11.70 -45.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030646745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.217 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds