Wall clock time and date at job start Tue Mar 31 2020 13:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99721 * 186.41920 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46500 * 114.26822 * 139.79275 * 11 10 9 13 13 C 1.34777 * 120.00034 * 111.47440 * 12 11 10 14 14 O 1.21607 * 119.99989 * 359.97438 * 13 12 11 15 15 C 1.47458 * 120.00309 * 179.97438 * 13 12 11 16 16 C 1.39082 * 120.78540 * 0.02562 * 15 13 12 17 17 C 1.39192 * 121.95809 * 179.97438 * 16 15 13 18 18 C 1.36427 * 120.59556 * 0.02562 * 17 16 15 19 19 C 1.39171 * 118.35350 * 359.97295 * 18 17 16 20 20 C 1.39159 * 114.53928 * 180.02562 * 19 18 17 21 21 C 1.36175 * 118.00899 * 179.97438 * 20 19 18 22 22 C 1.39612 * 120.31681 * 0.03714 * 21 20 19 23 23 C 1.36641 * 122.24373 * 359.97438 * 22 21 20 24 24 C 1.40071 * 118.85942 * 359.69597 * 23 22 21 25 25 C 1.50925 * 107.43508 * 359.97438 * 20 19 18 26 26 C 1.51005 * 134.24941 * 179.97438 * 18 17 16 27 27 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 28 28 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 29 29 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 30 30 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 31 31 H 1.09008 * 114.39164 * 272.67254 * 11 10 9 32 32 H 0.96996 * 119.99999 * 291.47680 * 12 11 10 33 33 H 1.08000 * 119.02675 * 0.02562 * 16 15 13 34 34 H 1.08004 * 119.70583 * 179.97438 * 17 16 15 35 35 H 1.07994 * 119.84328 * 180.02562 * 21 20 19 36 36 H 1.08000 * 118.88221 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.57123 * 179.97438 * 23 22 21 38 38 H 1.09001 * 110.27581 * 241.02951 * 25 20 19 39 39 H 1.08997 * 110.27600 * 118.95768 * 25 20 19 40 40 H 1.08992 * 110.27987 * 298.94716 * 26 18 17 41 41 H 1.09004 * 110.27321 * 61.02716 * 26 18 17 42 42 H 1.08996 * 113.46819 * 321.85844 * 27 9 7 43 43 H 1.09006 * 113.46873 * 92.30541 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1051 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 -0.2832 -5.2810 -0.6718 13 6 -0.9854 -5.9188 -1.6292 14 8 -0.9755 -5.5007 -2.7710 15 6 -1.7658 -7.1237 -1.2920 16 6 -1.7892 -7.6158 0.0086 17 6 -2.5177 -8.7505 0.3540 18 6 -3.2408 -9.4243 -0.5864 19 6 -3.2308 -8.9482 -1.8941 20 6 -3.9945 -9.6942 -2.7866 21 6 -4.0352 -9.2904 -4.0865 22 6 -3.3256 -8.1598 -4.4957 23 6 -2.5720 -7.4190 -3.6294 24 6 -2.5148 -7.8037 -2.2838 25 6 -4.6143 -10.8310 -2.0111 26 6 -4.1176 -10.6534 -0.5601 27 6 1.6717 -3.8136 -0.0623 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6458 -2.9419 0.5050 30 1 -0.5617 -2.1435 -1.1235 31 1 0.7431 -4.0157 -2.0656 32 1 -0.2914 -5.6143 0.2390 33 1 -1.2261 -7.1019 0.7736 34 1 -2.5098 -9.1012 1.3755 35 1 -4.6189 -9.8474 -4.8043 36 1 -3.3739 -7.8605 -5.5323 37 1 -2.0335 -6.5491 -3.9754 38 1 -4.2792 -11.7880 -2.4110 39 1 -5.7017 -10.7652 -2.0486 40 1 -3.5392 -11.5235 -0.2497 41 1 -4.9620 -10.5008 0.1122 42 1 2.6415 -4.0509 -0.4996 43 1 1.5398 -4.2434 0.9307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030646745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:11 Heat of formation + Delta-G solvation = 56.440488 kcal Electronic energy + Delta-G solvation = -25793.790631 eV Core-core repulsion = 22190.745311 eV Total energy + Delta-G solvation = -3603.045320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35785 -40.96184 -39.40296 -37.41415 -36.53959 -35.24526 -33.88994 -31.45735 -30.92356 -30.01089 -29.29551 -26.48103 -26.28685 -25.08676 -23.92735 -23.18731 -22.38990 -21.55599 -21.09897 -18.87363 -18.66043 -17.84154 -17.66287 -16.96611 -16.94594 -16.33691 -16.30351 -15.90976 -15.75732 -15.69878 -15.39805 -14.66150 -14.30270 -14.02683 -13.91075 -13.86091 -13.59723 -13.32303 -13.22820 -12.98612 -12.93055 -12.69654 -12.61589 -12.58232 -12.35350 -12.33656 -12.02147 -11.80210 -11.70539 -11.43579 -10.91264 -10.72390 -10.68333 -10.01274 -9.64370 -9.03317 -8.67357 -7.98127 -5.32381 -0.75699 0.04936 0.74286 1.43820 1.46922 1.56401 1.71211 2.03353 2.20751 2.47254 3.10483 3.23040 3.25484 3.40887 3.54543 3.72070 3.75136 3.86059 4.05390 4.14517 4.20899 4.27522 4.32863 4.40837 4.43259 4.46494 4.57437 4.64388 4.70541 4.84487 4.86437 5.00099 5.03907 5.09212 5.12942 5.16907 5.20437 5.21372 5.34849 5.39954 5.42613 5.55568 5.61951 5.67913 5.82247 5.82678 6.05405 6.52661 6.82327 7.19806 7.52586 8.50942 9.20872 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.027621 B = 0.002505 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.470214 B =11173.152615 C =11726.510900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.986 3.014 4 H -0.282 1.282 5 H -0.264 1.264 6 H -0.296 1.296 7 C -0.232 4.232 8 H 0.094 0.906 9 N -0.636 5.636 10 C 0.152 3.848 11 C 0.116 3.884 12 N -0.693 5.693 13 C 0.558 3.442 14 O -0.577 6.577 15 C -0.163 4.163 16 C -0.051 4.051 17 C -0.126 4.126 18 C -0.045 4.045 19 C -0.118 4.118 20 C -0.081 4.081 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.149 4.149 24 C -0.023 4.023 25 C -0.074 4.074 26 C -0.077 4.077 27 C 0.120 3.880 28 H 0.249 0.751 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.099 0.901 32 H 0.413 0.587 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 -28.464 0.006 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.813 3.187 4 H -0.209 1.209 5 H -0.188 1.188 6 H -0.222 1.222 7 C -0.360 4.360 8 H 0.111 0.889 9 N -0.362 5.362 10 C 0.024 3.976 11 C 0.009 3.991 12 N -0.345 5.345 13 C 0.348 3.652 14 O -0.459 6.459 15 C -0.166 4.166 16 C -0.070 4.070 17 C -0.144 4.144 18 C -0.045 4.045 19 C -0.118 4.118 20 C -0.081 4.081 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.167 4.167 24 C -0.024 4.024 25 C -0.111 4.111 26 C -0.114 4.114 27 C -0.005 4.005 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.038 0.962 31 H 0.117 0.883 32 H 0.252 0.748 33 H 0.169 0.831 34 H 0.185 0.815 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.026 -27.799 -0.757 29.562 hybrid contribution 0.457 1.807 0.152 1.870 sum -9.569 -25.992 -0.605 27.704 Atomic orbital electron populations 1.70058 1.06808 1.25925 1.57524 1.25803 0.96586 1.01463 1.02420 0.84959 0.77813 0.78438 0.77485 1.20885 1.18802 1.22241 1.19371 0.91201 0.82374 1.43018 0.88869 1.45652 1.06456 1.00934 1.83160 1.22391 0.88173 0.91154 0.95851 1.22999 0.92997 0.83442 0.99655 1.45649 1.48410 1.27918 1.12485 1.18541 0.78742 0.83295 0.84666 1.90627 1.65005 1.68448 1.21817 1.19854 1.03475 0.97464 0.95793 1.21724 0.96000 0.95236 0.94026 1.20548 0.97734 0.94975 1.01147 1.20792 0.95106 0.96658 0.91931 1.18644 1.00060 0.96034 0.97073 1.20509 0.96702 0.97342 0.93567 1.20606 1.00455 0.96849 0.95617 1.21302 0.95843 0.94968 1.00481 1.21778 1.00428 1.01351 0.93143 1.17767 0.96176 0.94800 0.93680 1.21090 1.01625 0.95884 0.92466 1.21190 0.98556 0.94078 0.97549 1.22813 0.96576 0.84063 0.97096 0.94180 0.95402 0.96204 0.88313 0.74829 0.83052 0.81544 0.82922 0.84463 0.85063 0.87484 0.87673 0.86891 0.87103 0.91901 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.92 11.81 21.65 0.26 -59.66 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 3 Si 0.99 46.55 29.56 68.60 2.03 48.57 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 7 C -0.23 -13.25 10.73 84.04 0.90 -12.35 16 8 H 0.09 4.99 7.84 -2.91 -0.02 4.96 16 9 N -0.64 -33.52 3.76 -738.02 -2.78 -36.30 16 10 C 0.15 7.64 7.05 83.27 0.59 8.23 16 11 C 0.12 4.67 4.62 45.55 0.21 4.88 16 12 N -0.69 -22.40 5.35 -444.75 -2.38 -24.78 16 13 C 0.56 19.83 7.76 86.67 0.67 20.50 16 14 O -0.58 -25.02 13.33 -4.05 -0.05 -25.07 16 15 C -0.16 -4.79 5.92 -19.80 -0.12 -4.91 16 16 C -0.05 -1.06 9.51 22.70 0.22 -0.85 16 17 C -0.13 -2.02 9.97 22.08 0.22 -1.80 16 18 C -0.04 -0.76 6.37 -19.97 -0.13 -0.89 16 19 C -0.12 -2.77 5.62 -22.28 -0.13 -2.90 16 20 C -0.08 -1.51 6.38 -20.05 -0.13 -1.64 16 21 C -0.12 -2.24 10.00 22.12 0.22 -2.02 16 22 C -0.11 -2.63 9.90 22.23 0.22 -2.41 16 23 C -0.15 -4.72 9.35 22.34 0.21 -4.51 16 24 C -0.02 -0.71 5.75 -21.43 -0.12 -0.83 16 25 C -0.07 -0.69 6.90 30.39 0.21 -0.48 16 26 C -0.08 -0.65 6.90 30.42 0.21 -0.44 16 27 C 0.12 4.76 8.44 83.18 0.70 5.47 16 28 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.02 1.15 7.57 -2.39 -0.02 1.13 16 31 H 0.10 4.42 7.45 -2.38 -0.02 4.40 16 32 H 0.41 10.20 6.81 -92.71 -0.63 9.57 16 33 H 0.15 2.30 6.38 -2.91 -0.02 2.28 16 34 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.13 4.88 5.35 -2.91 -0.02 4.87 16 38 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.06 2.19 8.13 -2.38 -0.02 2.17 16 Total: -1.00 -80.73 352.66 1.92 -78.81 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.42 Total: 19.00 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 4.43 Total: -0.56 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -4.90 Total: -120.75 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.05 Total: -25.07 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -80.73 1.92 -78.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030646745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.250 kcal (2) G-P(sol) polarization free energy of solvation -80.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds