Wall clock time and date at job start Tue Mar 31 2020 13:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99661 * 2 1 4 4 H 1.48497 * 109.47073 * 269.99832 * 3 2 1 5 5 H 1.48501 * 109.47394 * 30.00132 * 3 2 1 6 6 H 1.48507 * 109.46896 * 149.99973 * 3 2 1 7 7 C 1.38809 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99640 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00620 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49634 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11668 * 155.35537 * 10 9 7 12 12 N 1.46500 * 113.73962 * 137.95383 * 11 10 9 13 13 C 1.34775 * 119.99651 * 156.92455 * 12 11 10 14 14 O 1.21578 * 120.00606 * 359.97438 * 13 12 11 15 15 C 1.47631 * 119.99773 * 180.02562 * 13 12 11 16 16 C 1.39510 * 120.21233 * 6.53706 * 15 13 12 17 17 C 1.37930 * 119.96880 * 179.77333 * 16 15 13 18 18 C 1.38522 * 120.40432 * 0.50859 * 17 16 15 19 19 C 1.38031 * 120.43091 * 359.74303 * 18 17 16 20 20 C 1.39203 * 120.01880 * 0.02562 * 19 18 17 21 21 C 1.48187 * 120.20196 * 179.97438 * 20 19 18 22 22 C 1.39440 * 120.12898 * 57.79016 * 21 20 19 23 23 C 1.37990 * 119.86600 * 179.78840 * 22 21 20 24 24 C 1.38338 * 120.13183 * 0.47762 * 23 22 21 25 25 C 1.38335 * 120.26446 * 359.78411 * 24 23 22 26 26 C 1.37991 * 120.13086 * 359.97210 * 25 24 23 27 27 C 1.47814 * 134.45082 * 359.86232 * 9 7 2 28 28 H 0.96999 * 120.00096 * 359.97438 * 1 2 3 29 29 H 1.09000 * 113.76484 * 41.05499 * 10 9 7 30 30 H 1.08992 * 113.76739 * 269.65708 * 10 9 7 31 31 H 1.09007 * 113.74146 * 269.15056 * 11 10 9 32 32 H 0.96995 * 120.00247 * 336.91912 * 12 11 10 33 33 H 1.08005 * 120.01503 * 0.02562 * 16 15 13 34 34 H 1.07999 * 119.79914 * 180.27888 * 17 16 15 35 35 H 1.08002 * 119.78293 * 179.76570 * 18 17 16 36 36 H 1.07998 * 119.98809 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.06254 * 0.02562 * 22 21 20 38 38 H 1.08006 * 119.93640 * 180.21043 * 23 22 21 39 39 H 1.08001 * 119.86886 * 179.76458 * 24 23 22 40 40 H 1.07999 * 119.93403 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.06841 * 180.02562 * 26 25 24 42 42 H 1.09001 * 113.77118 * 90.38876 * 27 9 7 43 43 H 1.08994 * 113.83979 * 318.91738 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7202 -3.8102 -0.0019 11 6 0.3466 -4.0832 0.6373 12 7 -0.3333 -5.2614 0.0935 13 6 -1.2737 -5.8935 0.8233 14 8 -1.5575 -5.4862 1.9331 15 6 -1.9584 -7.0811 0.2754 16 6 -1.5432 -7.6343 -0.9361 17 6 -2.1835 -8.7468 -1.4410 18 6 -3.2461 -9.3146 -0.7574 19 6 -3.6741 -8.7777 0.4401 20 6 -3.0376 -7.6581 0.9683 21 6 -3.4941 -7.0780 2.2533 22 6 -3.5169 -7.8620 3.4062 23 6 -3.9389 -7.3150 4.6008 24 6 -4.3480 -5.9946 4.6539 25 6 -4.3326 -5.2135 3.5123 26 6 -3.9080 -5.7478 2.3130 27 6 -0.1057 -2.7570 0.0001 28 1 -0.4850 0.8400 0.0004 29 1 2.5620 -4.0326 0.6538 30 1 1.8327 -4.2346 -0.9995 31 1 0.3583 -4.0647 1.7272 32 1 -0.1067 -5.5866 -0.7918 33 1 -0.7180 -7.1942 -1.4764 34 1 -1.8569 -9.1755 -2.3768 35 1 -3.7427 -10.1833 -1.1638 36 1 -4.5035 -9.2260 0.9668 37 1 -3.2014 -8.8940 3.3650 38 1 -3.9538 -7.9202 5.4952 39 1 -4.6810 -5.5719 5.5903 40 1 -4.6536 -4.1834 3.5598 41 1 -3.8961 -5.1370 1.4224 42 1 -0.5312 -2.8714 -0.9969 43 1 -0.7188 -2.1406 0.6575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031345840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:53 Heat of formation + Delta-G solvation = 82.609054 kcal Electronic energy + Delta-G solvation = -26131.755799 eV Core-core repulsion = 22529.845234 eV Total energy + Delta-G solvation = -3601.910566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46913 -38.85848 -38.15224 -37.27347 -33.73488 -32.58641 -32.02788 -31.07614 -30.60758 -29.01476 -27.42202 -24.84399 -24.44312 -23.36610 -22.86144 -22.15882 -21.01949 -20.19359 -19.59281 -17.79162 -16.87456 -16.79131 -16.08624 -15.80860 -15.09138 -15.06499 -14.95865 -14.60204 -14.53934 -14.25123 -13.80203 -13.54518 -13.38537 -13.20708 -12.85126 -12.61593 -12.31602 -12.03734 -11.85040 -11.63309 -11.45454 -11.41753 -10.96190 -10.91927 -10.88073 -10.75636 -10.43474 -10.06193 -9.73742 -9.55062 -9.19149 -9.12547 -8.82202 -8.68201 -8.37188 -8.12793 -6.93400 -5.78478 -3.12538 0.67750 1.02354 1.63767 1.70142 3.00294 3.37666 3.41882 3.45764 3.48946 3.81157 4.00378 4.44431 4.50887 4.66504 4.72207 4.84533 5.07303 5.11756 5.13372 5.21696 5.26490 5.28123 5.47042 5.51463 5.56322 5.66582 5.73681 5.78093 5.98040 6.00101 6.15917 6.18657 6.20754 6.24641 6.28118 6.39776 6.54895 6.55840 6.69549 6.70112 6.75609 6.78812 7.17769 7.22372 7.35674 7.54740 7.87577 7.95205 8.55096 9.01489 9.67907 10.54305 11.38217 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003301 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.439306 B = 8479.384885 C = 9876.640062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.112 3.888 11 C 0.094 3.906 12 N -0.710 5.710 13 C 0.546 3.454 14 O -0.519 6.519 15 C -0.119 4.119 16 C -0.086 4.086 17 C -0.128 4.128 18 C -0.098 4.098 19 C -0.117 4.117 20 C 0.009 3.991 21 C -0.045 4.045 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.044 4.044 27 C 0.155 3.845 28 H 0.255 0.745 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.111 0.889 32 H 0.394 0.606 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.028 0.972 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 -20.792 0.730 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.015 4.015 11 C -0.011 4.011 12 N -0.361 5.361 13 C 0.333 3.667 14 O -0.396 6.396 15 C -0.122 4.122 16 C -0.104 4.104 17 C -0.146 4.146 18 C -0.117 4.117 19 C -0.135 4.135 20 C 0.008 3.992 21 C -0.045 4.045 22 C -0.124 4.124 23 C -0.150 4.150 24 C -0.133 4.133 25 C -0.141 4.141 26 C -0.062 4.062 27 C 0.029 3.971 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.129 0.871 32 H 0.228 0.772 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.046 0.954 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.204 -20.093 1.552 22.155 hybrid contribution 0.746 0.812 -0.746 1.331 sum -8.458 -19.281 0.806 21.070 Atomic orbital electron populations 1.69828 1.05051 1.25485 1.56101 1.24811 0.95687 0.97622 1.02124 0.86097 0.78652 0.83294 0.77565 1.21573 1.21545 1.20530 1.18984 0.90250 0.81624 1.44511 0.90061 1.45710 1.02416 0.99132 1.86065 1.22869 0.94701 0.86893 0.97017 1.23902 0.93244 0.84015 0.99933 1.46115 1.39553 1.30809 1.19657 1.18206 0.80122 0.82880 0.85532 1.90857 1.63064 1.66399 1.19265 1.20178 0.98090 0.97795 0.96176 1.21315 0.99206 0.95738 0.94187 1.21128 0.96631 0.96419 1.00413 1.21245 0.96313 0.99414 0.94691 1.21205 1.00277 0.95673 0.96365 1.18856 0.93231 0.93792 0.93281 1.18486 1.00099 0.94126 0.91812 1.20995 1.00185 0.99056 0.92129 1.20897 1.01141 0.95668 0.97316 1.21118 0.99844 0.94230 0.98091 1.20995 1.00735 0.99639 0.92723 1.20949 0.94106 0.93148 0.97989 1.22700 0.88127 0.89137 0.97164 0.93535 0.93230 0.94794 0.87089 0.77169 0.85316 0.85441 0.85552 0.85311 0.86621 0.86502 0.86570 0.86213 0.86741 0.95446 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 11.39 55.49 0.63 -26.91 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.38 10.70 -15.06 -0.16 -6.55 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.78 16 9 N -0.61 -15.64 3.70 -177.89 -0.66 -16.30 16 10 C 0.11 2.25 8.69 -2.97 -0.03 2.23 16 11 C 0.09 1.84 4.40 -70.15 -0.31 1.53 16 12 N -0.71 -11.20 5.32 -56.36 -0.30 -11.50 16 13 C 0.55 8.96 7.45 -12.43 -0.09 8.87 16 14 O -0.52 -10.13 11.96 5.30 0.06 -10.06 16 15 C -0.12 -1.60 5.88 -104.69 -0.62 -2.22 16 16 C -0.09 -0.90 9.52 -39.22 -0.37 -1.27 16 17 C -0.13 -1.10 10.02 -39.59 -0.40 -1.50 16 18 C -0.10 -0.83 10.03 -39.55 -0.40 -1.22 16 19 C -0.12 -1.18 9.63 -39.30 -0.38 -1.55 16 20 C 0.01 0.12 5.41 -104.55 -0.57 -0.44 16 21 C -0.05 -0.64 4.17 -104.92 -0.44 -1.08 16 22 C -0.11 -1.35 9.65 -39.22 -0.38 -1.72 16 23 C -0.13 -1.60 10.03 -39.64 -0.40 -2.00 16 24 C -0.11 -1.46 10.04 -39.51 -0.40 -1.86 16 25 C -0.12 -1.75 10.03 -39.64 -0.40 -2.15 16 26 C -0.04 -0.67 6.82 -39.22 -0.27 -0.94 16 27 C 0.16 3.73 7.33 -2.85 -0.02 3.71 16 28 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.11 2.38 7.51 -51.93 -0.39 1.99 16 32 H 0.39 5.06 6.79 -40.82 -0.28 4.78 16 33 H 0.13 1.10 6.46 -52.48 -0.34 0.77 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.11 1.82 7.80 -52.49 -0.41 1.41 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 2.10 7.16 -51.93 -0.37 1.73 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -33.68 361.19 -11.11 -44.79 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.56 Total: 5.73 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -5.71 Total: -8.41 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.33 Total: -54.71 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.06 Total: -10.06 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.68 -11.11 -44.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031345840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.403 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds