Wall clock time and date at job start Tue Mar 31 2020 13:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99661 * 2 1 4 4 H 1.48497 * 109.47073 * 269.99832 * 3 2 1 5 5 H 1.48501 * 109.47394 * 30.00132 * 3 2 1 6 6 H 1.48507 * 109.46896 * 149.99973 * 3 2 1 7 7 C 1.38809 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99640 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00620 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49634 * 180.02562 * 9 7 2 11 11 C 1.53945 * 86.11668 * 155.35537 * 10 9 7 12 12 N 1.46500 * 113.73962 * 137.95383 * 11 10 9 13 13 C 1.34775 * 119.99651 * 156.92455 * 12 11 10 14 14 O 1.21578 * 120.00606 * 359.97438 * 13 12 11 15 15 C 1.47631 * 119.99773 * 180.02562 * 13 12 11 16 16 C 1.39510 * 120.21233 * 6.53706 * 15 13 12 17 17 C 1.37930 * 119.96880 * 179.77333 * 16 15 13 18 18 C 1.38522 * 120.40432 * 0.50859 * 17 16 15 19 19 C 1.38031 * 120.43091 * 359.74303 * 18 17 16 20 20 C 1.39203 * 120.01880 * 0.02562 * 19 18 17 21 21 C 1.48187 * 120.20196 * 179.97438 * 20 19 18 22 22 C 1.39440 * 120.12898 * 57.79016 * 21 20 19 23 23 C 1.37990 * 119.86600 * 179.78840 * 22 21 20 24 24 C 1.38338 * 120.13183 * 0.47762 * 23 22 21 25 25 C 1.38335 * 120.26446 * 359.78411 * 24 23 22 26 26 C 1.37991 * 120.13086 * 359.97210 * 25 24 23 27 27 C 1.47814 * 134.45082 * 359.86232 * 9 7 2 28 28 H 0.96999 * 120.00096 * 359.97438 * 1 2 3 29 29 H 1.09000 * 113.76484 * 41.05499 * 10 9 7 30 30 H 1.08992 * 113.76739 * 269.65708 * 10 9 7 31 31 H 1.09007 * 113.74146 * 269.15056 * 11 10 9 32 32 H 0.96995 * 120.00247 * 336.91912 * 12 11 10 33 33 H 1.08005 * 120.01503 * 0.02562 * 16 15 13 34 34 H 1.07999 * 119.79914 * 180.27888 * 17 16 15 35 35 H 1.08002 * 119.78293 * 179.76570 * 18 17 16 36 36 H 1.07998 * 119.98809 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.06254 * 0.02562 * 22 21 20 38 38 H 1.08006 * 119.93640 * 180.21043 * 23 22 21 39 39 H 1.08001 * 119.86886 * 179.76458 * 24 23 22 40 40 H 1.07999 * 119.93403 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.06841 * 180.02562 * 26 25 24 42 42 H 1.09001 * 113.77118 * 90.38876 * 27 9 7 43 43 H 1.08994 * 113.83979 * 318.91738 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7202 -3.8102 -0.0019 11 6 0.3466 -4.0832 0.6373 12 7 -0.3333 -5.2614 0.0935 13 6 -1.2737 -5.8935 0.8233 14 8 -1.5575 -5.4862 1.9331 15 6 -1.9584 -7.0811 0.2754 16 6 -1.5432 -7.6343 -0.9361 17 6 -2.1835 -8.7468 -1.4410 18 6 -3.2461 -9.3146 -0.7574 19 6 -3.6741 -8.7777 0.4401 20 6 -3.0376 -7.6581 0.9683 21 6 -3.4941 -7.0780 2.2533 22 6 -3.5169 -7.8620 3.4062 23 6 -3.9389 -7.3150 4.6008 24 6 -4.3480 -5.9946 4.6539 25 6 -4.3326 -5.2135 3.5123 26 6 -3.9080 -5.7478 2.3130 27 6 -0.1057 -2.7570 0.0001 28 1 -0.4850 0.8400 0.0004 29 1 2.5620 -4.0326 0.6538 30 1 1.8327 -4.2346 -0.9995 31 1 0.3583 -4.0647 1.7272 32 1 -0.1067 -5.5866 -0.7918 33 1 -0.7180 -7.1942 -1.4764 34 1 -1.8569 -9.1755 -2.3768 35 1 -3.7427 -10.1833 -1.1638 36 1 -4.5035 -9.2260 0.9668 37 1 -3.2014 -8.8940 3.3650 38 1 -3.9538 -7.9202 5.4952 39 1 -4.6810 -5.5719 5.5903 40 1 -4.6536 -4.1834 3.5598 41 1 -3.8961 -5.1370 1.4224 42 1 -0.5312 -2.8714 -0.9969 43 1 -0.7188 -2.1406 0.6575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031345840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:53 Heat of formation + Delta-G solvation = 62.843503 kcal Electronic energy + Delta-G solvation = -26132.612898 eV Core-core repulsion = 22529.845234 eV Total energy + Delta-G solvation = -3602.767664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57141 -40.20754 -39.19299 -38.69429 -35.25909 -33.94796 -33.45314 -32.11866 -31.63313 -29.94912 -29.32606 -26.65705 -25.79014 -24.36075 -24.22042 -23.24391 -22.08329 -21.42982 -21.16485 -18.88031 -18.79596 -17.88400 -17.39890 -17.00366 -16.77226 -16.15508 -16.09591 -15.86773 -15.54830 -15.50350 -15.39453 -14.66204 -14.61728 -14.25527 -14.19764 -13.75701 -13.60874 -13.31332 -13.26604 -13.18363 -12.84903 -12.83010 -12.62977 -12.39362 -12.26627 -11.98377 -11.93262 -11.79128 -11.55359 -10.97627 -10.90880 -10.10712 -10.05749 -9.84656 -9.63030 -9.13159 -9.00261 -7.93979 -5.29807 -0.23008 0.22083 0.60773 0.74788 1.43997 1.46896 1.55653 1.93299 2.13493 2.48495 2.85237 3.00228 3.22939 3.36999 3.64231 3.75245 3.82241 3.93322 4.09324 4.15116 4.20321 4.28347 4.29274 4.46318 4.49724 4.50065 4.59525 4.70832 4.75916 4.83172 4.87312 4.97582 5.12932 5.14024 5.18517 5.20818 5.34951 5.43408 5.45200 5.50633 5.60523 5.67083 5.68701 5.73709 5.86489 5.96272 6.18088 6.61180 6.85469 7.29053 7.55751 8.48524 9.22788 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003301 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.439306 B = 8479.384885 C = 9876.640062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.983 3.017 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.638 5.638 10 C 0.123 3.877 11 C 0.124 3.876 12 N -0.700 5.700 13 C 0.543 3.457 14 O -0.557 6.557 15 C -0.146 4.146 16 C -0.086 4.086 17 C -0.122 4.122 18 C -0.085 4.085 19 C -0.119 4.119 20 C -0.012 4.012 21 C -0.053 4.053 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.069 4.069 27 C 0.154 3.846 28 H 0.248 0.752 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.411 0.589 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.024 0.976 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.237 -24.050 -0.332 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.811 3.189 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.365 5.365 10 C -0.003 4.003 11 C 0.018 3.982 12 N -0.352 5.352 13 C 0.332 3.668 14 O -0.437 6.437 15 C -0.149 4.149 16 C -0.105 4.105 17 C -0.140 4.140 18 C -0.103 4.103 19 C -0.137 4.137 20 C -0.013 4.013 21 C -0.053 4.053 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.141 4.141 25 C -0.162 4.162 26 C -0.088 4.088 27 C 0.028 3.972 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.249 0.751 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.042 0.958 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.352 -23.413 0.459 24.862 hybrid contribution 0.436 1.683 -0.446 1.795 sum -7.916 -21.730 0.014 23.127 Atomic orbital electron populations 1.70048 1.06720 1.25714 1.57912 1.25724 0.96541 1.01234 1.02637 0.85010 0.77678 0.78617 0.77606 1.20977 1.22280 1.18943 1.19449 0.91007 0.82881 1.43149 0.89118 1.46036 1.03253 1.00828 1.86382 1.23011 0.94911 0.83611 0.98747 1.23117 0.93118 0.83595 0.98405 1.45821 1.39434 1.29521 1.20458 1.18802 0.79514 0.83500 0.85026 1.90841 1.64029 1.67683 1.21115 1.19982 0.99347 0.97446 0.98100 1.21561 0.99705 0.96262 0.92966 1.21557 0.95887 0.95220 1.01303 1.21715 0.95519 0.99654 0.93394 1.21443 1.00411 0.94642 0.97178 1.19003 0.93943 0.95154 0.93205 1.18731 0.99601 0.93684 0.93334 1.21331 0.99869 1.00045 0.91827 1.21312 0.99696 0.95589 0.98308 1.21411 0.99779 0.94680 0.98273 1.21175 1.01533 1.00094 0.93384 1.20905 0.96177 0.94128 0.97573 1.22559 0.87323 0.91048 0.96316 0.94291 0.91740 0.91515 0.89257 0.75134 0.83665 0.82027 0.81904 0.83644 0.84383 0.83434 0.84341 0.86373 0.89140 0.95820 0.95049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.80 11.39 21.65 0.25 -59.55 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 3 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.24 -13.50 10.70 84.03 0.90 -12.60 16 8 H 0.09 4.85 7.83 -2.90 -0.02 4.83 16 9 N -0.64 -33.41 3.70 -716.73 -2.65 -36.06 16 10 C 0.12 4.79 8.69 86.49 0.75 5.55 16 11 C 0.12 4.98 4.40 46.74 0.21 5.19 16 12 N -0.70 -22.13 5.32 -450.49 -2.40 -24.53 16 13 C 0.54 18.35 7.45 86.72 0.65 19.00 16 14 O -0.56 -23.10 11.96 -3.96 -0.05 -23.14 16 15 C -0.15 -3.85 5.88 -19.91 -0.12 -3.96 16 16 C -0.09 -1.60 9.52 22.50 0.21 -1.38 16 17 C -0.12 -1.59 10.02 22.26 0.22 -1.37 16 18 C -0.08 -1.06 10.03 22.29 0.22 -0.84 16 19 C -0.12 -2.09 9.63 22.45 0.22 -1.88 16 20 C -0.01 -0.31 5.41 -19.82 -0.11 -0.41 16 21 C -0.05 -1.55 4.17 -20.05 -0.08 -1.64 16 22 C -0.11 -2.80 9.65 22.50 0.22 -2.58 16 23 C -0.13 -3.05 10.03 22.23 0.22 -2.83 16 24 C -0.12 -3.18 10.04 22.32 0.22 -2.95 16 25 C -0.14 -4.42 10.03 22.23 0.22 -4.19 16 26 C -0.07 -2.30 6.82 22.50 0.15 -2.15 16 27 C 0.15 7.78 7.33 86.44 0.63 8.41 16 28 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.24 8.11 -2.39 -0.02 2.22 16 31 H 0.09 4.03 7.51 -2.38 -0.02 4.01 16 32 H 0.41 10.00 6.79 -92.71 -0.63 9.37 16 33 H 0.15 2.06 6.46 -2.91 -0.02 2.05 16 34 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 35 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 38 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.09 3.28 7.80 -2.91 -0.02 3.25 16 42 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.03 1.84 7.16 -2.39 -0.02 1.83 16 Total: -1.00 -77.98 361.19 2.79 -75.19 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.40 Total: 23.73 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 5.21 Total: -4.17 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -4.81 Total: -120.15 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -77.98 2.79 -75.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031345840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.037 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds