Wall clock time and date at job start Tue Mar 31 2020 13:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99803 * 2 1 4 4 H 1.48497 * 109.47315 * 274.99428 * 3 2 1 5 5 H 1.48502 * 109.47466 * 34.99794 * 3 2 1 6 6 H 1.48503 * 109.46786 * 154.99727 * 3 2 1 7 7 C 1.38808 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00149 * 174.89098 * 7 2 1 9 9 N 1.36939 * 119.99872 * 354.89420 * 7 2 1 10 10 C 1.47869 * 126.94470 * 4.99916 * 9 7 2 11 11 C 1.58432 * 104.83493 * 182.30338 * 10 9 7 12 12 H 1.08996 * 116.63083 * 159.51483 * 11 10 9 13 13 C 1.57433 * 99.62062 * 32.32322 * 11 10 9 14 14 C 1.49289 * 126.94806 * 184.99735 * 9 7 2 15 15 H 1.09010 * 116.14928 * 15.84133 * 14 9 7 16 16 C 1.56021 * 104.09371 * 246.70119 * 14 9 7 17 17 N 1.47866 * 105.10351 * 287.91525 * 16 14 9 18 18 C 1.34771 * 126.94335 * 181.98112 * 17 16 14 19 19 O 1.21575 * 119.99652 * 184.98632 * 18 17 16 20 20 C 1.47775 * 120.00250 * 4.70498 * 18 17 16 21 21 C 1.40651 * 119.74638 * 172.24666 * 20 18 17 22 22 C 1.35725 * 120.84611 * 179.97438 * 21 20 18 23 23 C 1.40707 * 120.01988 * 359.97338 * 22 21 20 24 24 C 1.40479 * 121.04327 * 180.02562 * 23 22 21 25 25 C 1.36147 * 119.71944 * 179.97438 * 24 23 22 26 26 C 1.39358 * 121.00718 * 0.04627 * 25 24 23 27 27 C 1.36088 * 120.95847 * 359.95670 * 26 25 24 28 28 C 1.40654 * 119.65933 * 0.02562 * 27 26 25 29 29 C 1.38484 * 119.74411 * 351.97487 * 20 18 17 30 30 H 0.96997 * 119.99849 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.31445 * 300.90902 * 10 9 7 32 32 H 1.09003 * 110.31625 * 62.99244 * 10 9 7 33 33 H 1.09001 * 112.53645 * 192.40530 * 13 11 10 34 34 H 1.09003 * 112.31486 * 64.87304 * 13 11 10 35 35 H 1.09004 * 110.31426 * 169.01117 * 16 14 9 36 36 H 1.08993 * 110.31381 * 46.82698 * 16 14 9 37 37 H 1.08003 * 119.57976 * 0.02562 * 21 20 18 38 38 H 1.08000 * 119.99079 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.14196 * 359.97438 * 24 23 22 40 40 H 1.07997 * 119.49301 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.52173 * 179.97438 * 26 25 24 42 42 H 1.08002 * 120.17057 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.28083 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5044 2.6199 0.8030 6 1 3.5965 1.4120 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0870 -1.2040 -0.0827 9 7 1.3297 -2.3856 0.1066 10 6 -0.1375 -2.5685 0.1250 11 6 -0.3497 -4.1258 0.3254 12 1 -1.3208 -4.4415 0.7065 13 6 0.9120 -4.4517 1.2088 14 6 1.9190 -3.7520 0.2270 15 1 2.9739 -3.7981 0.4977 16 6 1.5169 -4.4579 -1.1050 17 7 0.0650 -4.7105 -0.9842 18 6 -0.7253 -5.3369 -1.8783 19 8 -1.9252 -5.3970 -1.6918 20 6 -0.1343 -5.9452 -3.0884 21 6 -0.9335 -6.7361 -3.9334 22 6 -0.4139 -7.3051 -5.0507 23 6 0.9403 -7.1068 -5.3770 24 6 1.5003 -7.6850 -6.5284 25 6 2.8138 -7.4750 -6.8186 26 6 3.6162 -6.6938 -5.9892 27 6 3.1094 -6.1175 -4.8654 28 6 1.7565 -6.3116 -4.5331 29 6 1.2009 -5.7276 -3.3847 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5770 -2.0189 0.9573 32 1 -0.5721 -2.2371 -0.8181 33 1 1.0949 -5.5226 1.2969 34 1 0.8735 -3.9621 2.1819 35 1 2.0571 -5.3985 -1.2128 36 1 1.7182 -3.8055 -1.9547 37 1 -1.9743 -6.8920 -3.6905 38 1 -1.0403 -7.9095 -5.6900 39 1 0.8914 -8.2935 -7.1806 40 1 3.2403 -7.9209 -7.7049 41 1 4.6554 -6.5433 -6.2422 42 1 3.7427 -5.5141 -4.2319 43 1 1.8102 -5.1164 -2.7355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032750489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:35 Heat of formation + Delta-G solvation = 91.177779 kcal Electronic energy + Delta-G solvation = -26817.911083 eV Core-core repulsion = 23216.372086 eV Total energy + Delta-G solvation = -3601.538998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75415 -39.77405 -37.92074 -36.08358 -33.90863 -32.89551 -31.59190 -30.41235 -29.67071 -28.66155 -28.46645 -25.50274 -24.57460 -23.33131 -23.08520 -22.01048 -20.83066 -19.89417 -18.93519 -17.91900 -17.10961 -16.87880 -16.40111 -15.72851 -15.41851 -15.09165 -14.62163 -14.47690 -14.05553 -13.83147 -13.65519 -13.45753 -13.30298 -13.06989 -13.05911 -12.50818 -12.03180 -11.80074 -11.73603 -11.40764 -11.30500 -11.23314 -11.04480 -11.01834 -10.87423 -10.64302 -10.54044 -10.17528 -10.11099 -10.05199 -9.69320 -9.55170 -8.72259 -8.69234 -8.05927 -7.97256 -6.97113 -5.81408 -3.16072 0.34388 0.81290 1.91584 2.60070 3.30508 3.34934 3.39941 3.42719 3.49848 4.11588 4.38157 4.47064 4.63548 4.72716 4.82037 4.96254 5.00723 5.07601 5.17500 5.25136 5.27413 5.30740 5.35950 5.49292 5.53407 5.65337 5.69839 5.77104 5.83410 5.90702 6.01083 6.05027 6.15929 6.23839 6.29984 6.34924 6.38181 6.44697 6.49085 6.52461 6.64095 6.72074 6.89287 7.39237 7.44980 7.68584 8.00415 8.06080 8.53095 9.05556 9.66691 10.35692 11.30588 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.003779 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.602584 B = 7408.274189 C = 8447.418672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.175 3.825 11 C 0.096 3.904 12 H 0.116 0.884 13 C -0.151 4.151 14 C 0.140 3.860 15 H 0.108 0.892 16 C 0.072 3.928 17 N -0.599 5.599 18 C 0.567 3.433 19 O -0.551 6.551 20 C -0.119 4.119 21 C -0.065 4.065 22 C -0.122 4.122 23 C -0.037 4.037 24 C -0.114 4.114 25 C -0.111 4.111 26 C -0.126 4.126 27 C -0.093 4.093 28 C -0.062 4.062 29 C -0.096 4.096 30 H 0.255 0.745 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -16.027 -8.704 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.006 4.006 12 H 0.134 0.866 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.125 0.875 16 C -0.053 4.053 17 N -0.331 5.331 18 C 0.357 3.643 19 O -0.431 6.431 20 C -0.122 4.122 21 C -0.083 4.083 22 C -0.140 4.140 23 C -0.038 4.038 24 C -0.132 4.132 25 C -0.129 4.129 26 C -0.144 4.144 27 C -0.111 4.111 28 C -0.062 4.062 29 C -0.114 4.114 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.953 -15.783 -8.665 18.674 hybrid contribution 0.373 0.941 -0.282 1.051 sum 5.326 -14.842 -8.947 18.130 Atomic orbital electron populations 1.69914 1.05000 1.25422 1.55962 1.24845 0.95661 0.97765 1.01775 0.86117 0.78672 0.83527 0.77502 1.21661 1.21612 1.20525 1.19037 0.90794 0.82056 1.44375 0.90081 1.45220 1.01386 1.00014 1.85451 1.22403 0.84645 0.86797 1.01192 1.24928 0.97727 0.96509 0.81448 0.86629 1.24192 0.96577 0.99376 0.98881 1.23214 0.96745 0.86245 0.90706 0.87467 1.23722 0.80691 0.98649 1.02265 1.49082 1.09577 1.54720 1.19722 1.17875 0.85807 0.78312 0.82310 1.90735 1.14119 1.61309 1.76924 1.19966 0.94307 1.01130 0.96772 1.20864 1.00195 0.94313 0.92966 1.20890 0.94021 1.01326 0.97745 1.18241 0.93857 0.96829 0.94831 1.21026 0.95637 1.00110 0.96399 1.20880 0.94085 0.98479 0.99501 1.20839 1.00099 0.98259 0.95208 1.21146 0.93899 0.98821 0.97236 1.18111 0.94095 0.98562 0.95436 1.23088 0.95213 0.97010 0.96065 0.93499 0.92246 0.93532 0.91462 0.89597 0.91889 0.90158 0.84782 0.85237 0.85632 0.86076 0.85903 0.85161 0.81493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.58 55.49 0.59 -25.84 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.38 29.56 -169.99 -5.02 16.35 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.23 -6.10 10.37 -15.06 -0.16 -6.26 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -13.97 3.02 -154.76 -0.47 -14.44 16 10 C 0.17 4.15 4.90 -0.29 0.00 4.15 16 11 C 0.10 1.84 5.34 -60.96 -0.33 1.52 16 12 H 0.12 2.16 8.07 -51.93 -0.42 1.74 16 13 C -0.15 -2.47 6.86 -22.10 -0.15 -2.62 16 14 C 0.14 2.49 5.47 -62.55 -0.34 2.14 16 15 H 0.11 1.67 8.14 -51.92 -0.42 1.25 16 16 C 0.07 1.18 4.22 -1.68 -0.01 1.17 16 17 N -0.60 -11.11 2.95 -157.58 -0.46 -11.57 16 18 C 0.57 10.92 7.84 -12.36 -0.10 10.83 16 19 O -0.55 -12.12 16.70 5.30 0.09 -12.03 16 20 C -0.12 -1.94 5.87 -105.00 -0.62 -2.55 16 21 C -0.06 -0.94 9.49 -39.57 -0.38 -1.31 16 22 C -0.12 -1.49 9.73 -39.55 -0.38 -1.87 16 23 C -0.04 -0.47 5.75 -106.76 -0.61 -1.08 16 24 C -0.11 -1.15 9.76 -39.49 -0.39 -1.53 16 25 C -0.11 -1.02 9.95 -39.92 -0.40 -1.42 16 26 C -0.13 -1.21 9.95 -39.94 -0.40 -1.61 16 27 C -0.09 -1.04 9.77 -39.44 -0.39 -1.42 16 28 C -0.06 -0.82 5.74 -106.85 -0.61 -1.43 16 29 C -0.10 -1.40 8.48 -38.71 -0.33 -1.72 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.06 1.55 7.33 -51.93 -0.38 1.17 16 32 H 0.05 1.28 7.80 -51.93 -0.40 0.88 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.84 6.79 -51.93 -0.35 0.49 16 36 H 0.08 1.43 6.93 -51.93 -0.36 1.07 16 37 H 0.13 1.90 7.63 -52.48 -0.40 1.50 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 43 H 0.17 2.33 2.81 -54.35 -0.15 2.18 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -32.09 347.31 -11.12 -43.21 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.40 Total: 4.31 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -5.67 Total: -5.21 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.35 Total: -51.86 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.09 -11.12 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032750489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.383 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds