Wall clock time and date at job start Tue Mar 31 2020 13:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99803 * 2 1 4 4 H 1.48497 * 109.47315 * 274.99428 * 3 2 1 5 5 H 1.48502 * 109.47466 * 34.99794 * 3 2 1 6 6 H 1.48503 * 109.46786 * 154.99727 * 3 2 1 7 7 C 1.38808 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00149 * 174.89098 * 7 2 1 9 9 N 1.36939 * 119.99872 * 354.89420 * 7 2 1 10 10 C 1.47869 * 126.94470 * 4.99916 * 9 7 2 11 11 C 1.58432 * 104.83493 * 182.30338 * 10 9 7 12 12 H 1.08996 * 116.63083 * 159.51483 * 11 10 9 13 13 C 1.57433 * 99.62062 * 32.32322 * 11 10 9 14 14 C 1.49289 * 126.94806 * 184.99735 * 9 7 2 15 15 H 1.09010 * 116.14928 * 15.84133 * 14 9 7 16 16 C 1.56021 * 104.09371 * 246.70119 * 14 9 7 17 17 N 1.47866 * 105.10351 * 287.91525 * 16 14 9 18 18 C 1.34771 * 126.94335 * 181.98112 * 17 16 14 19 19 O 1.21575 * 119.99652 * 184.98632 * 18 17 16 20 20 C 1.47775 * 120.00250 * 4.70498 * 18 17 16 21 21 C 1.40651 * 119.74638 * 172.24666 * 20 18 17 22 22 C 1.35725 * 120.84611 * 179.97438 * 21 20 18 23 23 C 1.40707 * 120.01988 * 359.97338 * 22 21 20 24 24 C 1.40479 * 121.04327 * 180.02562 * 23 22 21 25 25 C 1.36147 * 119.71944 * 179.97438 * 24 23 22 26 26 C 1.39358 * 121.00718 * 0.04627 * 25 24 23 27 27 C 1.36088 * 120.95847 * 359.95670 * 26 25 24 28 28 C 1.40654 * 119.65933 * 0.02562 * 27 26 25 29 29 C 1.38484 * 119.74411 * 351.97487 * 20 18 17 30 30 H 0.96997 * 119.99849 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.31445 * 300.90902 * 10 9 7 32 32 H 1.09003 * 110.31625 * 62.99244 * 10 9 7 33 33 H 1.09001 * 112.53645 * 192.40530 * 13 11 10 34 34 H 1.09003 * 112.31486 * 64.87304 * 13 11 10 35 35 H 1.09004 * 110.31426 * 169.01117 * 16 14 9 36 36 H 1.08993 * 110.31381 * 46.82698 * 16 14 9 37 37 H 1.08003 * 119.57976 * 0.02562 * 21 20 18 38 38 H 1.08000 * 119.99079 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.14196 * 359.97438 * 24 23 22 40 40 H 1.07997 * 119.49301 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.52173 * 179.97438 * 26 25 24 42 42 H 1.08002 * 120.17057 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.28083 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5044 2.6199 0.8030 6 1 3.5965 1.4120 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0870 -1.2040 -0.0827 9 7 1.3297 -2.3856 0.1066 10 6 -0.1375 -2.5685 0.1250 11 6 -0.3497 -4.1258 0.3254 12 1 -1.3208 -4.4415 0.7065 13 6 0.9120 -4.4517 1.2088 14 6 1.9190 -3.7520 0.2270 15 1 2.9739 -3.7981 0.4977 16 6 1.5169 -4.4579 -1.1050 17 7 0.0650 -4.7105 -0.9842 18 6 -0.7253 -5.3369 -1.8783 19 8 -1.9252 -5.3970 -1.6918 20 6 -0.1343 -5.9452 -3.0884 21 6 -0.9335 -6.7361 -3.9334 22 6 -0.4139 -7.3051 -5.0507 23 6 0.9403 -7.1068 -5.3770 24 6 1.5003 -7.6850 -6.5284 25 6 2.8138 -7.4750 -6.8186 26 6 3.6162 -6.6938 -5.9892 27 6 3.1094 -6.1175 -4.8654 28 6 1.7565 -6.3116 -4.5331 29 6 1.2009 -5.7276 -3.3847 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5770 -2.0189 0.9573 32 1 -0.5721 -2.2371 -0.8181 33 1 1.0949 -5.5226 1.2969 34 1 0.8735 -3.9621 2.1819 35 1 2.0571 -5.3985 -1.2128 36 1 1.7182 -3.8055 -1.9547 37 1 -1.9743 -6.8920 -3.6905 38 1 -1.0403 -7.9095 -5.6900 39 1 0.8914 -8.2935 -7.1806 40 1 3.2403 -7.9209 -7.7049 41 1 4.6554 -6.5433 -6.2422 42 1 3.7427 -5.5141 -4.2319 43 1 1.8102 -5.1164 -2.7355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032750489.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:34 Heat of formation + Delta-G solvation = 73.545012 kcal Electronic energy + Delta-G solvation = -26818.675698 eV Core-core repulsion = 23216.372086 eV Total energy + Delta-G solvation = -3602.303612 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00816 -40.95308 -39.38751 -37.10745 -35.61713 -34.09885 -33.10604 -31.50467 -30.92302 -30.30433 -29.72463 -27.15509 -26.07186 -24.54401 -24.17420 -22.98485 -22.23001 -21.41996 -20.46626 -19.21076 -18.55005 -17.94348 -17.74232 -17.18950 -16.79302 -16.33180 -16.10972 -15.71550 -15.45045 -15.21109 -14.92495 -14.49676 -14.38859 -14.36427 -14.11429 -13.77548 -13.61399 -13.40743 -13.15298 -12.94680 -12.78510 -12.70359 -12.31508 -12.22038 -12.16623 -12.11568 -12.04354 -11.94663 -11.55930 -11.51201 -11.07732 -10.96573 -10.68764 -9.74873 -9.50551 -8.92101 -8.88162 -7.85585 -5.21508 -0.61731 -0.13171 0.99721 1.47300 1.48368 1.51938 1.57818 1.88202 2.31917 2.48125 3.14769 3.29940 3.32279 3.46242 3.61471 3.74098 3.81728 3.89577 3.91905 4.02681 4.12316 4.17606 4.24454 4.36016 4.42399 4.44034 4.52223 4.56297 4.70789 4.83218 4.86963 4.93411 4.99754 5.04727 5.10827 5.17604 5.22408 5.28428 5.35581 5.43605 5.52388 5.59440 5.60203 5.64730 5.81078 6.05305 6.08463 6.54319 7.01307 7.04883 7.69877 8.40655 9.25804 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.003779 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.602584 B = 7408.274189 C = 8447.418672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.071 4.071 3 Si 0.976 3.024 4 H -0.293 1.293 5 H -0.302 1.302 6 H -0.258 1.258 7 C -0.230 4.230 8 H 0.099 0.901 9 N -0.615 5.615 10 C 0.187 3.813 11 C 0.098 3.902 12 H 0.115 0.885 13 C -0.127 4.127 14 C 0.136 3.864 15 H 0.142 0.858 16 C 0.080 3.920 17 N -0.603 5.603 18 C 0.560 3.440 19 O -0.592 6.592 20 C -0.145 4.145 21 C -0.090 4.090 22 C -0.107 4.107 23 C -0.052 4.052 24 C -0.119 4.119 25 C -0.106 4.106 26 C -0.119 4.119 27 C -0.110 4.110 28 C -0.080 4.080 29 C -0.093 4.093 30 H 0.244 0.756 31 H 0.023 0.977 32 H -0.008 1.008 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.143 0.857 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 -18.659 -10.477 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.182 1.182 7 C -0.359 4.359 8 H 0.117 0.883 9 N -0.339 5.339 10 C 0.061 3.939 11 C -0.005 4.005 12 H 0.133 0.867 13 C -0.166 4.166 14 C 0.030 3.970 15 H 0.159 0.841 16 C -0.044 4.044 17 N -0.334 5.334 18 C 0.352 3.648 19 O -0.476 6.476 20 C -0.148 4.148 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.053 4.053 24 C -0.136 4.136 25 C -0.123 4.123 26 C -0.137 4.137 27 C -0.128 4.128 28 C -0.080 4.080 29 C -0.111 4.111 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.010 0.990 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.143 0.857 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.784 -18.461 -10.435 22.954 hybrid contribution -0.681 1.653 0.094 1.790 sum 8.102 -16.808 -10.341 21.333 Atomic orbital electron populations 1.70167 1.06747 1.25177 1.58578 1.25694 0.96332 1.01281 1.03002 0.85085 0.78163 0.79334 0.76891 1.22083 1.22884 1.18236 1.19565 0.91714 0.82985 1.41627 0.88292 1.45461 1.01345 1.01855 1.85286 1.21975 0.85145 0.89879 0.96899 1.24782 0.99537 0.93019 0.83170 0.86712 1.24107 0.93400 1.01421 0.97713 1.23656 0.98594 0.83096 0.91663 0.84068 1.23684 0.79713 1.00228 1.00737 1.49158 1.10558 1.54326 1.19342 1.18481 0.85446 0.77916 0.82992 1.90690 1.15874 1.63055 1.77946 1.19822 0.95470 1.03129 0.96406 1.20866 0.99904 0.95809 0.94269 1.21202 0.94485 1.00118 0.96702 1.18568 0.93895 0.97025 0.95773 1.21360 0.96542 1.00025 0.95722 1.21349 0.93641 0.97246 1.00095 1.21272 1.01565 0.96734 0.94110 1.21367 0.93155 0.99762 0.98466 1.18330 0.95385 0.99038 0.95241 1.23077 0.94355 0.96855 0.96818 0.94726 0.95910 0.98988 0.87716 0.89656 0.87551 0.91802 0.85691 0.82189 0.82957 0.82773 0.83078 0.83905 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.63 10.58 21.65 0.23 -58.40 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 3 Si 0.98 44.91 29.56 68.60 2.03 46.94 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.23 -12.02 10.37 84.03 0.87 -11.15 16 8 H 0.10 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.62 -29.21 3.02 -643.54 -1.95 -31.15 16 10 C 0.19 9.47 4.90 88.06 0.43 9.90 16 11 C 0.10 3.87 5.34 47.96 0.26 4.13 16 12 H 0.12 4.52 8.07 -2.39 -0.02 4.50 16 13 C -0.13 -3.94 6.86 33.59 0.23 -3.71 16 14 C 0.14 4.58 5.47 46.93 0.26 4.83 16 15 H 0.14 3.83 8.14 -2.38 -0.02 3.81 16 16 C 0.08 2.53 4.22 87.16 0.37 2.90 16 17 N -0.60 -22.80 2.95 -770.72 -2.27 -25.07 16 18 C 0.56 22.55 7.84 86.77 0.68 23.23 16 19 O -0.59 -27.81 16.70 -3.95 -0.07 -27.87 16 20 C -0.15 -4.86 5.87 -20.11 -0.12 -4.98 16 21 C -0.09 -2.66 9.49 22.28 0.21 -2.45 16 22 C -0.11 -2.47 9.73 22.29 0.22 -2.25 16 23 C -0.05 -1.19 5.75 -21.25 -0.12 -1.31 16 24 C -0.12 -1.92 9.76 22.33 0.22 -1.70 16 25 C -0.11 -1.42 9.95 22.05 0.22 -1.20 16 26 C -0.12 -1.76 9.95 22.04 0.22 -1.54 16 27 C -0.11 -2.12 9.77 22.36 0.22 -1.90 16 28 C -0.08 -1.97 5.74 -21.31 -0.12 -2.09 16 29 C -0.09 -2.66 8.48 22.83 0.19 -2.47 16 30 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.02 1.29 7.33 -2.39 -0.02 1.28 16 32 H -0.01 -0.49 7.80 -2.39 -0.02 -0.51 16 33 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.11 2.51 6.79 -2.38 -0.02 2.49 16 36 H 0.06 2.27 6.93 -2.39 -0.02 2.25 16 37 H 0.13 3.79 7.63 -2.91 -0.02 3.76 16 38 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 43 H 0.17 4.53 2.81 -4.66 -0.01 4.52 16 Total: -1.00 -76.30 347.31 3.70 -72.61 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.03 Total: 18.17 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 4.69 Total: 4.77 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -3.99 Total: -114.62 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.07 Total: -27.87 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -76.30 3.70 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032750489.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.152 kcal (2) G-P(sol) polarization free energy of solvation -76.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds