Wall clock time and date at job start Tue Mar 31 2020 13:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48505 * 109.46674 * 239.99838 * 3 2 1 5 5 H 1.48500 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47368 * 119.99789 * 3 2 1 7 7 C 1.38813 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00052 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99577 * 0.02562 * 7 2 1 10 10 C 1.47866 * 126.94985 * 359.97438 * 9 7 2 11 11 C 1.55482 * 105.17285 * 181.92226 * 10 9 7 12 12 H 1.09005 * 116.03995 * 159.75339 * 11 10 9 13 13 C 1.57435 * 99.68573 * 32.86207 * 11 10 9 14 14 C 1.49299 * 126.93949 * 179.97438 * 9 7 2 15 15 H 1.08999 * 116.14871 * 15.84176 * 14 9 7 16 16 C 1.56021 * 104.09119 * 246.69664 * 14 9 7 17 17 N 1.47867 * 105.10310 * 288.76804 * 16 14 9 18 18 C 1.34774 * 126.94313 * 181.97859 * 17 16 14 19 19 O 1.21605 * 120.00350 * 184.89946 * 18 17 16 20 20 C 1.47459 * 120.00215 * 4.90307 * 18 17 16 21 21 C 1.38728 * 120.37447 * 313.68365 * 20 18 17 22 22 C 1.38905 * 120.64858 * 180.30056 * 21 20 18 23 23 C 1.36294 * 121.17605 * 359.69806 * 22 21 20 24 24 C 1.40554 * 120.12620 * 0.02562 * 23 22 21 25 25 C 1.40579 * 121.16771 * 180.02562 * 24 23 22 26 26 C 1.36130 * 119.65457 * 180.02562 * 25 24 23 27 27 C 1.39297 * 120.95408 * 359.95427 * 26 25 24 28 28 C 1.36266 * 120.92909 * 0.02562 * 27 26 25 29 29 C 1.40131 * 119.69069 * 0.02562 * 28 27 26 30 30 H 0.97002 * 119.99750 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.31981 * 300.91073 * 10 9 7 32 32 H 1.09001 * 110.31372 * 62.99627 * 10 9 7 33 33 H 1.08997 * 112.53510 * 191.70798 * 13 11 10 34 34 H 1.09001 * 112.31447 * 64.16494 * 13 11 10 35 35 H 1.08993 * 110.31542 * 169.86437 * 16 14 9 36 36 H 1.09001 * 110.39671 * 47.71861 * 16 14 9 37 37 H 1.07999 * 119.67441 * 0.02562 * 21 20 18 38 38 H 1.07992 * 119.41287 * 179.71656 * 22 21 20 39 39 H 1.07997 * 119.93232 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.17095 * 0.02562 * 25 24 23 41 41 H 1.08003 * 119.52389 * 179.97438 * 26 25 24 42 42 H 1.07997 * 119.54096 * 180.02562 * 27 26 25 43 43 H 1.07996 * 120.15331 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1422 -2.5668 0.0005 11 6 -0.3648 -4.1048 0.0509 12 1 -1.3441 -4.4355 0.3970 13 6 0.8840 -4.5251 0.9125 14 6 1.9103 -3.7617 0.0005 15 1 2.9645 -3.8351 0.2676 16 6 1.5082 -4.3457 -1.3893 17 7 0.0515 -4.5835 -1.3005 18 6 -0.7412 -5.1188 -2.2499 19 8 -1.9435 -5.1760 -2.0770 20 6 -0.1506 -5.6353 -3.4985 21 6 0.7934 -4.8892 -4.1890 22 6 1.3488 -5.3675 -5.3690 23 6 0.9893 -6.5799 -5.8774 24 6 0.0407 -7.3723 -5.2082 25 6 -0.3456 -8.6263 -5.7126 26 6 -1.2675 -9.3680 -5.0396 27 6 -1.8349 -8.9032 -3.8553 28 6 -1.4830 -7.6927 -3.3381 29 6 -0.5378 -6.9014 -4.0044 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5814 -2.0914 0.8775 32 1 -0.5740 -2.1519 -0.9102 33 1 1.0491 -5.6025 0.9109 34 1 0.8451 -4.1189 1.9233 35 1 2.0341 -5.2826 -1.5725 36 1 1.7271 -3.6285 -2.1804 37 1 1.0962 -3.9252 -3.8077 38 1 2.0786 -4.7681 -5.8927 39 1 1.4342 -6.9323 -6.7962 40 1 0.0867 -8.9992 -6.6293 41 1 -1.5631 -10.3310 -5.4292 42 1 -2.5639 -9.5108 -3.3398 43 1 -1.9311 -7.3444 -2.4192 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032764527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:00 Heat of formation + Delta-G solvation = 75.998390 kcal Electronic energy + Delta-G solvation = -27008.247940 eV Core-core repulsion = 23406.050715 eV Total energy + Delta-G solvation = -3602.197225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76815 -39.73401 -37.73093 -36.40820 -33.66753 -32.74249 -31.54295 -30.36699 -29.58403 -28.77034 -28.45800 -25.31776 -24.45105 -23.28018 -22.95968 -22.52770 -20.48907 -19.87910 -18.64442 -17.86544 -17.28065 -16.73538 -16.32576 -15.94694 -15.61008 -15.24519 -14.58535 -14.17513 -14.03301 -13.81885 -13.62435 -13.59565 -13.29012 -13.10965 -12.58135 -12.37505 -12.12383 -11.84277 -11.68854 -11.38675 -11.35035 -11.18598 -11.07290 -10.97955 -10.88720 -10.73811 -10.62828 -10.27751 -10.11285 -9.97546 -9.65796 -9.47298 -8.72835 -8.67897 -8.08203 -7.88339 -6.95705 -5.78899 -3.13896 0.33619 0.96893 1.84469 2.82399 3.16840 3.34775 3.36275 3.40209 3.42482 4.09502 4.39716 4.52076 4.71707 4.77843 4.87699 4.95661 5.03577 5.10707 5.16070 5.28843 5.31730 5.33994 5.40364 5.53678 5.59403 5.69274 5.75706 5.86917 5.92108 6.01631 6.06739 6.11042 6.23185 6.26354 6.33488 6.38381 6.44595 6.47136 6.54690 6.56956 6.66538 6.76452 6.92498 7.39544 7.45888 7.69382 8.01476 8.07934 8.50033 9.07618 9.68606 10.37470 11.32979 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.003527 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.504685 B = 7937.174982 C = 8552.572332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.115 0.885 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.081 3.919 17 N -0.598 5.598 18 C 0.572 3.428 19 O -0.546 6.546 20 C -0.103 4.103 21 C -0.081 4.081 22 C -0.117 4.117 23 C -0.094 4.094 24 C -0.056 4.056 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.121 4.121 28 C -0.095 4.095 29 C -0.018 4.018 30 H 0.255 0.745 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.438 -17.071 -8.576 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.003 4.003 12 H 0.132 0.868 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.125 0.875 16 C -0.044 4.044 17 N -0.330 5.330 18 C 0.361 3.639 19 O -0.426 6.426 20 C -0.106 4.106 21 C -0.099 4.099 22 C -0.135 4.135 23 C -0.112 4.112 24 C -0.056 4.056 25 C -0.129 4.129 26 C -0.135 4.135 27 C -0.139 4.139 28 C -0.113 4.113 29 C -0.018 4.018 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.691 -16.815 -8.537 18.934 hybrid contribution 0.427 1.041 -0.206 1.144 sum 2.118 -15.773 -8.744 18.159 Atomic orbital electron populations 1.69910 1.04944 1.25477 1.56170 1.24826 0.95679 0.97723 1.01951 0.86196 0.78445 0.83164 0.77887 1.21154 1.21623 1.21098 1.18995 0.90371 0.82056 1.44746 0.90180 1.45249 1.01310 0.99275 1.86307 1.21832 0.84727 0.87175 1.01460 1.24349 0.97819 0.97755 0.80399 0.86764 1.24207 0.96596 0.98945 0.99212 1.23200 0.96600 0.86307 0.90755 0.87483 1.23455 0.79792 0.99027 1.02099 1.49159 1.09494 1.58993 1.15373 1.17703 0.85890 0.77822 0.82517 1.90755 1.13903 1.58545 1.79368 1.20012 0.98687 0.95285 0.96612 1.21573 0.93715 0.99931 0.94715 1.20799 1.00374 0.96326 0.96030 1.21127 0.96411 0.94381 0.99320 1.18019 0.97696 0.95309 0.94621 1.20973 0.98321 0.93622 0.99935 1.20846 0.97160 0.99893 0.95578 1.20900 1.00276 0.96308 0.96395 1.21320 0.95768 0.93737 1.00450 1.17811 0.96579 0.93188 0.94270 0.93495 0.92502 0.93404 0.91578 0.89663 0.92675 0.90847 0.84598 0.85302 0.85393 0.85590 0.86069 0.85950 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.56 55.49 0.59 -25.95 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.11 10.38 -15.06 -0.16 -6.27 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.10 3.02 -156.67 -0.47 -14.57 16 10 C 0.17 4.12 4.75 -1.97 -0.01 4.11 16 11 C 0.10 1.91 5.22 -62.65 -0.33 1.58 16 12 H 0.11 2.13 8.07 -51.93 -0.42 1.71 16 13 C -0.15 -2.51 6.83 -22.09 -0.15 -2.66 16 14 C 0.14 2.56 5.53 -62.54 -0.35 2.21 16 15 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 16 C 0.08 1.39 5.04 -1.67 -0.01 1.38 16 17 N -0.60 -11.18 2.95 -158.12 -0.47 -11.64 16 18 C 0.57 10.99 6.92 -12.51 -0.09 10.91 16 19 O -0.55 -11.90 15.55 5.27 0.08 -11.82 16 20 C -0.10 -1.71 5.50 -104.62 -0.58 -2.28 16 21 C -0.08 -1.18 8.57 -39.15 -0.34 -1.52 16 22 C -0.12 -1.38 9.93 -40.03 -0.40 -1.78 16 23 C -0.09 -1.04 9.75 -39.41 -0.38 -1.43 16 24 C -0.06 -0.72 5.74 -106.85 -0.61 -1.34 16 25 C -0.11 -1.16 9.77 -39.46 -0.39 -1.55 16 26 C -0.12 -1.19 9.95 -39.95 -0.40 -1.59 16 27 C -0.12 -1.42 9.95 -39.90 -0.40 -1.82 16 28 C -0.09 -1.39 9.16 -39.58 -0.36 -1.76 16 29 C -0.02 -0.27 5.76 -106.56 -0.61 -0.89 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 32 H 0.05 1.32 7.67 -51.93 -0.40 0.92 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.33 6.20 -51.93 -0.32 1.01 16 37 H 0.14 2.06 5.92 -52.49 -0.31 1.75 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.14 2.21 6.13 -52.49 -0.32 1.89 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -31.74 347.61 -11.21 -42.95 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.51 Total: 4.26 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -5.64 Total: -4.91 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.35 Total: -52.16 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.74 -11.21 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032764527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.951 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds