Wall clock time and date at job start Tue Mar 31 2020 13:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48505 * 109.46674 * 239.99838 * 3 2 1 5 5 H 1.48500 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47368 * 119.99789 * 3 2 1 7 7 C 1.38813 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00052 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99577 * 0.02562 * 7 2 1 10 10 C 1.47866 * 126.94985 * 359.97438 * 9 7 2 11 11 C 1.55482 * 105.17285 * 181.92226 * 10 9 7 12 12 H 1.09005 * 116.03995 * 159.75339 * 11 10 9 13 13 C 1.57435 * 99.68573 * 32.86207 * 11 10 9 14 14 C 1.49299 * 126.93949 * 179.97438 * 9 7 2 15 15 H 1.08999 * 116.14871 * 15.84176 * 14 9 7 16 16 C 1.56021 * 104.09119 * 246.69664 * 14 9 7 17 17 N 1.47867 * 105.10310 * 288.76804 * 16 14 9 18 18 C 1.34774 * 126.94313 * 181.97859 * 17 16 14 19 19 O 1.21605 * 120.00350 * 184.89946 * 18 17 16 20 20 C 1.47459 * 120.00215 * 4.90307 * 18 17 16 21 21 C 1.38728 * 120.37447 * 313.68365 * 20 18 17 22 22 C 1.38905 * 120.64858 * 180.30056 * 21 20 18 23 23 C 1.36294 * 121.17605 * 359.69806 * 22 21 20 24 24 C 1.40554 * 120.12620 * 0.02562 * 23 22 21 25 25 C 1.40579 * 121.16771 * 180.02562 * 24 23 22 26 26 C 1.36130 * 119.65457 * 180.02562 * 25 24 23 27 27 C 1.39297 * 120.95408 * 359.95427 * 26 25 24 28 28 C 1.36266 * 120.92909 * 0.02562 * 27 26 25 29 29 C 1.40131 * 119.69069 * 0.02562 * 28 27 26 30 30 H 0.97002 * 119.99750 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.31981 * 300.91073 * 10 9 7 32 32 H 1.09001 * 110.31372 * 62.99627 * 10 9 7 33 33 H 1.08997 * 112.53510 * 191.70798 * 13 11 10 34 34 H 1.09001 * 112.31447 * 64.16494 * 13 11 10 35 35 H 1.08993 * 110.31542 * 169.86437 * 16 14 9 36 36 H 1.09001 * 110.39671 * 47.71861 * 16 14 9 37 37 H 1.07999 * 119.67441 * 0.02562 * 21 20 18 38 38 H 1.07992 * 119.41287 * 179.71656 * 22 21 20 39 39 H 1.07997 * 119.93232 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.17095 * 0.02562 * 25 24 23 41 41 H 1.08003 * 119.52389 * 179.97438 * 26 25 24 42 42 H 1.07997 * 119.54096 * 180.02562 * 27 26 25 43 43 H 1.07996 * 120.15331 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1422 -2.5668 0.0005 11 6 -0.3648 -4.1048 0.0509 12 1 -1.3441 -4.4355 0.3970 13 6 0.8840 -4.5251 0.9125 14 6 1.9103 -3.7617 0.0005 15 1 2.9645 -3.8351 0.2676 16 6 1.5082 -4.3457 -1.3893 17 7 0.0515 -4.5835 -1.3005 18 6 -0.7412 -5.1188 -2.2499 19 8 -1.9435 -5.1760 -2.0770 20 6 -0.1506 -5.6353 -3.4985 21 6 0.7934 -4.8892 -4.1890 22 6 1.3488 -5.3675 -5.3690 23 6 0.9893 -6.5799 -5.8774 24 6 0.0407 -7.3723 -5.2082 25 6 -0.3456 -8.6263 -5.7126 26 6 -1.2675 -9.3680 -5.0396 27 6 -1.8349 -8.9032 -3.8553 28 6 -1.4830 -7.6927 -3.3381 29 6 -0.5378 -6.9014 -4.0044 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5814 -2.0914 0.8775 32 1 -0.5740 -2.1519 -0.9102 33 1 1.0491 -5.6025 0.9109 34 1 0.8451 -4.1189 1.9233 35 1 2.0341 -5.2826 -1.5725 36 1 1.7271 -3.6285 -2.1804 37 1 1.0962 -3.9252 -3.8077 38 1 2.0786 -4.7681 -5.8927 39 1 1.4342 -6.9323 -6.7962 40 1 0.0867 -8.9992 -6.6293 41 1 -1.5631 -10.3310 -5.4292 42 1 -2.5639 -9.5108 -3.3398 43 1 -1.9311 -7.3444 -2.4192 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032764527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:00 Heat of formation + Delta-G solvation = 58.499549 kcal Electronic energy + Delta-G solvation = -27009.006747 eV Core-core repulsion = 23406.050715 eV Total energy + Delta-G solvation = -3602.956032 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.02260 -41.02770 -39.22008 -37.37654 -35.48735 -33.90157 -33.14145 -31.34863 -30.98888 -30.33785 -29.85503 -27.03939 -25.91784 -24.56926 -23.92552 -23.71033 -21.92165 -21.46309 -20.19802 -19.14148 -18.58858 -17.99691 -17.70931 -17.25016 -17.01451 -16.55922 -16.15294 -15.71548 -15.27685 -15.20596 -14.87206 -14.64120 -14.48045 -14.27205 -13.87690 -13.76905 -13.54684 -13.38561 -13.19747 -12.94273 -12.84936 -12.69057 -12.40804 -12.24982 -12.21853 -12.15960 -12.11164 -11.95495 -11.82177 -11.55031 -11.05206 -10.88745 -10.69696 -9.63008 -9.62232 -8.93790 -8.87032 -7.85226 -5.21741 -0.65109 0.02452 0.82705 1.46498 1.49527 1.55723 1.65590 1.87470 2.09391 2.47856 3.11839 3.28403 3.32922 3.45972 3.68944 3.78753 3.84277 3.85813 3.94840 4.00362 4.10558 4.16208 4.24987 4.36132 4.41329 4.51607 4.55591 4.63990 4.66694 4.80668 4.90313 4.95077 4.97752 5.09404 5.12965 5.16448 5.19481 5.29653 5.38402 5.42487 5.48552 5.57326 5.61991 5.63479 5.82698 6.04245 6.07585 6.54017 7.00675 7.02184 7.69278 8.39762 9.25779 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.003527 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.504685 B = 7937.174982 C = 8552.572332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.304 1.304 6 H -0.273 1.273 7 C -0.232 4.232 8 H 0.098 0.902 9 N -0.615 5.615 10 C 0.189 3.811 11 C 0.099 3.901 12 H 0.114 0.886 13 C -0.127 4.127 14 C 0.137 3.863 15 H 0.139 0.861 16 C 0.091 3.909 17 N -0.602 5.602 18 C 0.567 3.433 19 O -0.586 6.586 20 C -0.140 4.140 21 C -0.078 4.078 22 C -0.128 4.128 23 C -0.069 4.069 24 C -0.075 4.075 25 C -0.098 4.098 26 C -0.121 4.121 27 C -0.108 4.108 28 C -0.136 4.136 29 C -0.034 4.034 30 H 0.243 0.757 31 H 0.021 0.979 32 H -0.005 1.005 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.120 0.880 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.141 0.859 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -20.364 -11.004 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.264 4.264 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.231 1.231 6 H -0.199 1.199 7 C -0.360 4.360 8 H 0.115 0.885 9 N -0.340 5.340 10 C 0.063 3.937 11 C -0.004 4.004 12 H 0.131 0.869 13 C -0.166 4.166 14 C 0.030 3.970 15 H 0.156 0.844 16 C -0.033 4.033 17 N -0.333 5.333 18 C 0.358 3.642 19 O -0.469 6.469 20 C -0.142 4.142 21 C -0.097 4.097 22 C -0.146 4.146 23 C -0.087 4.087 24 C -0.075 4.075 25 C -0.115 4.115 26 C -0.138 4.138 27 C -0.126 4.126 28 C -0.155 4.155 29 C -0.035 4.035 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.013 0.987 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.138 0.862 38 H 0.176 0.824 39 H 0.190 0.810 40 H 0.185 0.815 41 H 0.176 0.824 42 H 0.159 0.841 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.698 -20.152 -10.965 23.418 hybrid contribution -0.509 1.926 0.453 2.043 sum 4.189 -18.226 -10.512 21.453 Atomic orbital electron populations 1.70170 1.06680 1.25229 1.58612 1.25692 0.96382 1.01278 1.03031 0.85140 0.76962 0.78731 0.78425 1.20126 1.23093 1.19855 1.19515 0.91308 0.82993 1.42217 0.88478 1.45492 1.01307 1.01054 1.86107 1.21395 0.85129 0.89989 0.97225 1.24201 0.99454 0.94502 0.82201 0.86860 1.24105 0.93544 1.00730 0.98186 1.23616 0.98349 0.83325 0.91681 0.84359 1.23347 0.78982 1.00207 1.00759 1.49228 1.10275 1.58814 1.15004 1.18302 0.85486 0.77070 0.83340 1.90707 1.15693 1.60127 1.80363 1.19837 1.01074 0.97046 0.96283 1.21584 0.93309 0.99014 0.95815 1.21069 1.01063 0.97337 0.95112 1.21625 0.94278 0.93075 0.99713 1.18392 0.98343 0.96837 0.93949 1.21460 0.97255 0.92088 1.00701 1.21264 0.96642 1.01337 0.94568 1.21230 0.99597 0.94976 0.96819 1.21199 0.97819 0.95746 1.00692 1.18006 0.97143 0.92765 0.95589 0.94743 0.96127 0.98706 0.88110 0.89648 0.89212 0.92292 0.86235 0.82402 0.80972 0.81525 0.82354 0.84120 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.91 10.56 21.65 0.23 -58.68 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 3 Si 0.98 45.25 29.55 68.60 2.03 47.27 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.23 -12.27 10.38 84.03 0.87 -11.40 16 8 H 0.10 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.62 -29.80 3.02 -649.59 -1.96 -31.76 16 10 C 0.19 9.65 4.75 86.97 0.41 10.06 16 11 C 0.10 4.03 5.22 46.87 0.24 4.28 16 12 H 0.11 4.56 8.07 -2.38 -0.02 4.55 16 13 C -0.13 -4.10 6.83 33.60 0.23 -3.88 16 14 C 0.14 4.82 5.53 46.93 0.26 5.08 16 15 H 0.14 4.05 8.14 -2.39 -0.02 4.03 16 16 C 0.09 3.07 5.04 87.16 0.44 3.51 16 17 N -0.60 -23.47 2.95 -772.44 -2.28 -25.75 16 18 C 0.57 23.29 6.92 86.67 0.60 23.89 16 19 O -0.59 -27.88 15.55 -4.05 -0.06 -27.94 16 20 C -0.14 -4.78 5.50 -19.87 -0.11 -4.88 16 21 C -0.08 -2.30 8.57 22.55 0.19 -2.10 16 22 C -0.13 -2.68 9.93 21.98 0.22 -2.47 16 23 C -0.07 -1.24 9.75 22.38 0.22 -1.02 16 24 C -0.08 -1.70 5.74 -21.31 -0.12 -1.83 16 25 C -0.10 -1.59 9.77 22.35 0.22 -1.37 16 26 C -0.12 -1.97 9.95 22.03 0.22 -1.75 16 27 C -0.11 -2.38 9.95 22.06 0.22 -2.16 16 28 C -0.14 -4.12 9.16 22.27 0.20 -3.92 16 29 C -0.03 -1.05 5.76 -21.12 -0.12 -1.17 16 30 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.02 1.18 7.46 -2.39 -0.02 1.16 16 32 H -0.01 -0.32 7.67 -2.39 -0.02 -0.34 16 33 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.18 6.20 -2.39 -0.01 2.16 16 37 H 0.12 3.79 5.92 -2.91 -0.02 3.77 16 38 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 43 H 0.11 3.79 6.13 -2.91 -0.02 3.78 16 Total: -1.00 -77.07 347.61 3.64 -73.43 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 1.03 Total: 18.10 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 4.66 Total: 5.33 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -4.01 Total: -116.19 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.06 Total: -27.94 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -77.07 3.64 -73.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032764527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.928 kcal (2) G-P(sol) polarization free energy of solvation -77.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds