Wall clock time and date at job start Tue Mar 31 2020 13:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99849 * 2 1 4 4 H 1.48499 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47027 * 299.99886 * 3 2 1 6 6 H 1.48496 * 109.47052 * 59.99676 * 3 2 1 7 7 C 1.38815 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 196.92237 * 7 2 1 9 9 N 1.36928 * 120.00029 * 16.91798 * 7 2 1 10 10 C 1.47154 * 120.98262 * 206.24676 * 9 7 2 11 11 C 1.53297 * 108.38322 * 230.51353 * 10 9 7 12 12 O 1.42968 * 109.22471 * 307.69687 * 11 10 9 13 13 C 1.42960 * 114.16832 * 62.57763 * 12 11 10 14 14 H 1.08999 * 109.55009 * 57.36744 * 13 12 11 15 15 C 1.52990 * 109.51537 * 177.49604 * 13 12 11 16 16 N 1.46499 * 109.47417 * 299.75208 * 15 13 12 17 17 C 1.34782 * 120.00151 * 180.02562 * 16 15 13 18 18 O 1.21551 * 119.99612 * 359.97438 * 17 16 15 19 19 C 1.47846 * 119.99734 * 179.97438 * 17 16 15 20 20 C 1.39580 * 120.14026 * 180.02562 * 19 17 16 21 21 C 1.37951 * 119.85070 * 179.97438 * 20 19 17 22 22 C 1.38369 * 120.14697 * 0.02562 * 21 20 19 23 23 C 1.50695 * 119.85460 * 179.97438 * 22 21 20 24 24 F 1.39912 * 109.46717 * 269.99736 * 23 22 21 25 25 C 1.38359 * 120.29039 * 0.25061 * 22 21 20 26 26 C 1.37963 * 120.14462 * 359.49121 * 25 22 21 27 27 C 1.47158 * 120.98143 * 26.22183 * 9 7 2 28 28 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.68196 * 350.23670 * 10 9 7 30 30 H 1.09004 * 109.68301 * 110.75591 * 10 9 7 31 31 H 1.09000 * 109.51542 * 67.61849 * 11 10 9 32 32 H 1.09003 * 109.51427 * 187.77660 * 11 10 9 33 33 H 1.09008 * 109.47477 * 179.74665 * 15 13 12 34 34 H 1.09005 * 109.46991 * 59.74795 * 15 13 12 35 35 H 0.97000 * 120.00064 * 359.97438 * 16 15 13 36 36 H 1.07998 * 120.07382 * 359.95293 * 20 19 17 37 37 H 1.07997 * 119.92685 * 180.02562 * 21 20 19 38 38 H 1.08993 * 109.47326 * 150.00179 * 23 22 21 39 39 H 1.09002 * 109.47331 * 29.99674 * 23 22 21 40 40 H 1.07997 * 119.92876 * 179.74646 * 25 22 21 41 41 H 1.08000 * 120.07221 * 180.24939 * 26 25 22 42 42 H 1.08997 * 109.68365 * 9.76175 * 27 9 7 43 43 H 1.08997 * 109.68034 * 249.20809 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2222 0.2728 9 7 1.3702 -2.3625 -0.3440 10 6 1.8342 -3.6633 0.1641 11 6 1.9815 -4.6215 -1.0234 12 8 0.7651 -4.6306 -1.7747 13 6 0.4245 -3.3680 -2.3523 14 1 1.2374 -3.0297 -2.9950 15 6 -0.8544 -3.5128 -3.1794 16 7 -0.6365 -4.4900 -4.2488 17 6 -1.6324 -4.7810 -5.1091 18 8 -2.7116 -4.2329 -4.9972 19 6 -1.4122 -5.7668 -6.1886 20 6 -2.4414 -6.0700 -7.0815 21 6 -2.2292 -6.9904 -8.0869 22 6 -0.9997 -7.6129 -8.2111 23 6 -0.7753 -8.6178 -9.3115 24 9 -1.1145 -9.8953 -8.8527 25 6 0.0228 -7.3211 -7.3258 26 6 -0.1745 -6.3986 -6.3191 27 6 0.1975 -2.3455 -1.2329 28 1 -0.4850 0.8400 -0.0004 29 1 2.7975 -3.5415 0.6592 30 1 1.1062 -4.0624 0.8704 31 1 2.8005 -4.2882 -1.6608 32 1 2.1903 -5.6265 -0.6566 33 1 -1.1160 -2.5487 -3.6158 34 1 -1.6663 -3.8528 -2.5364 35 1 0.2248 -4.9271 -4.3383 36 1 -3.4017 -5.5854 -6.9852 37 1 -3.0245 -7.2256 -8.7787 38 1 0.2736 -8.6046 -9.6072 39 1 -1.3978 -8.3625 -10.1691 40 1 0.9788 -7.8135 -7.4256 41 1 0.6257 -6.1688 -5.6313 42 1 0.0771 -1.3512 -1.6628 43 1 -0.6954 -2.6123 -0.6677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035626640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:04 Heat of formation + Delta-G solvation = -82.460391 kcal Electronic energy + Delta-G solvation = -26437.413730 eV Core-core repulsion = 22397.575991 eV Total energy + Delta-G solvation = -4039.837739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.02104 -40.31922 -38.85974 -38.22102 -34.91851 -34.37495 -32.83896 -31.52183 -31.30101 -30.75306 -27.79768 -27.03677 -25.37497 -23.36044 -23.05912 -22.71930 -21.63779 -20.47540 -19.67489 -18.16953 -17.03118 -16.71049 -16.49724 -16.24052 -16.05430 -15.74282 -15.21688 -15.12430 -14.79603 -14.54895 -14.39722 -14.23427 -13.93080 -13.80137 -13.32357 -13.25078 -13.01367 -12.86658 -12.73711 -12.18947 -11.75089 -11.56839 -11.48126 -11.28705 -11.14420 -10.89579 -10.76225 -10.46322 -10.28538 -10.11042 -9.92180 -9.69754 -9.35775 -9.31423 -9.13385 -8.89310 -8.59569 -6.80550 -5.88768 -3.32622 0.46934 1.02229 2.70416 3.18395 3.31415 3.39186 3.41114 3.60861 4.00971 4.19859 4.22894 4.40033 4.45528 4.58680 4.61499 4.76467 4.99048 5.13660 5.18530 5.19980 5.31370 5.40630 5.50295 5.56996 5.62308 5.80901 5.87214 5.89827 5.96714 6.02983 6.04931 6.08752 6.18840 6.31302 6.44338 6.48343 6.59654 6.73906 7.02030 7.43097 7.56566 7.67086 7.78455 8.23694 8.28661 9.06346 9.69319 10.26190 11.19391 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002382 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.773149 B =11752.694214 C =12268.165214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.391 6.391 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.132 3.868 16 N -0.712 5.712 17 C 0.551 3.449 18 O -0.538 6.538 19 C -0.116 4.116 20 C -0.063 4.063 21 C -0.106 4.106 22 C -0.119 4.119 23 C 0.105 3.895 24 F -0.210 7.210 25 C -0.104 4.104 26 C -0.087 4.087 27 C 0.152 3.848 28 H 0.256 0.744 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.401 0.599 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 -15.408 -17.467 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.074 0.926 15 C 0.008 3.992 16 N -0.363 5.363 17 C 0.337 3.663 18 O -0.417 6.417 19 C -0.119 4.119 20 C -0.082 4.082 21 C -0.124 4.124 22 C -0.120 4.120 23 C 0.050 3.950 24 F -0.191 7.191 25 C -0.122 4.122 26 C -0.106 4.106 27 C 0.026 3.974 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.237 0.763 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.321 -15.021 -17.333 22.939 hybrid contribution 1.028 0.866 0.204 1.359 sum 0.706 -14.155 -17.129 22.232 Atomic orbital electron populations 1.70024 1.05256 1.25716 1.53536 1.25071 0.95366 0.98543 1.00667 0.86191 0.79276 0.83697 0.77416 1.20227 1.21415 1.21580 1.19225 0.92668 0.84434 1.42246 0.91279 1.44059 1.33732 1.01405 1.52636 1.21605 0.98655 0.87549 0.93967 1.23013 0.86112 0.99647 0.94016 1.87779 1.42229 1.31537 1.69454 1.23157 0.94939 0.86534 0.95865 0.92574 1.21478 0.97905 0.92340 0.87454 1.45909 1.15412 1.44111 1.30885 1.18247 0.84299 0.82022 0.81685 1.90782 1.24869 1.52654 1.73370 1.20150 0.95190 0.99091 0.97515 1.21310 0.99030 0.95439 0.92426 1.21039 0.96424 0.96405 0.98538 1.20431 0.94953 0.98590 0.98009 1.20842 1.02524 0.77056 0.94562 1.92830 1.94288 1.41061 1.90951 1.20990 0.99056 0.97655 0.94544 1.21379 0.96266 0.95324 0.97619 1.21312 0.89522 0.97589 0.89010 0.93408 0.91948 0.95520 0.93848 0.89973 0.89730 0.90475 0.76309 0.84176 0.85061 0.89640 0.89654 0.85073 0.85022 0.88529 0.94994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 11.14 55.49 0.62 -25.03 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 3 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.26 -6.86 9.65 -15.06 -0.15 -7.00 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 9 N -0.59 -14.60 3.05 -171.82 -0.52 -15.12 16 10 C 0.11 2.21 6.73 -3.53 -0.02 2.19 16 11 C 0.05 0.85 6.99 37.31 0.26 1.11 16 12 O -0.39 -7.06 10.14 -35.23 -0.36 -7.42 16 13 C 0.05 1.01 2.86 -26.58 -0.08 0.93 16 14 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.13 2.21 5.37 -4.05 -0.02 2.19 16 16 N -0.71 -10.19 5.40 -61.25 -0.33 -10.52 16 17 C 0.55 8.28 7.77 -12.33 -0.10 8.19 16 18 O -0.54 -9.95 16.35 5.32 0.09 -9.87 16 19 C -0.12 -1.39 5.87 -104.97 -0.62 -2.01 16 20 C -0.06 -0.68 9.60 -39.19 -0.38 -1.06 16 21 C -0.11 -0.91 9.68 -39.64 -0.38 -1.29 16 22 C -0.12 -0.96 5.60 -104.53 -0.59 -1.54 16 23 C 0.10 0.62 7.67 36.00 0.28 0.89 16 24 F -0.21 -1.90 17.34 2.25 0.04 -1.87 16 25 C -0.10 -0.85 9.68 -39.64 -0.38 -1.24 16 26 C -0.09 -0.84 9.54 -39.18 -0.37 -1.21 16 27 C 0.15 3.54 4.73 -3.53 -0.02 3.52 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.40 4.87 6.39 -40.82 -0.26 4.61 16 36 H 0.14 1.52 7.65 -52.49 -0.40 1.12 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 39 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 1.05 6.41 -52.49 -0.34 0.71 16 42 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -32.53 361.04 -8.63 -41.16 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.92 Total: 3.42 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.65 Total: 3.65 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.24 Total: -50.68 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.27 Total: -17.28 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.53 -8.63 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035626640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.301 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds