Wall clock time and date at job start Tue Mar 31 2020 13:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99849 * 2 1 4 4 H 1.48499 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47027 * 299.99886 * 3 2 1 6 6 H 1.48496 * 109.47052 * 59.99676 * 3 2 1 7 7 C 1.38815 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 196.92237 * 7 2 1 9 9 N 1.36928 * 120.00029 * 16.91798 * 7 2 1 10 10 C 1.47154 * 120.98262 * 206.24676 * 9 7 2 11 11 C 1.53297 * 108.38322 * 230.51353 * 10 9 7 12 12 O 1.42968 * 109.22471 * 307.69687 * 11 10 9 13 13 C 1.42960 * 114.16832 * 62.57763 * 12 11 10 14 14 H 1.08999 * 109.55009 * 57.36744 * 13 12 11 15 15 C 1.52990 * 109.51537 * 177.49604 * 13 12 11 16 16 N 1.46499 * 109.47417 * 299.75208 * 15 13 12 17 17 C 1.34782 * 120.00151 * 180.02562 * 16 15 13 18 18 O 1.21551 * 119.99612 * 359.97438 * 17 16 15 19 19 C 1.47846 * 119.99734 * 179.97438 * 17 16 15 20 20 C 1.39580 * 120.14026 * 180.02562 * 19 17 16 21 21 C 1.37951 * 119.85070 * 179.97438 * 20 19 17 22 22 C 1.38369 * 120.14697 * 0.02562 * 21 20 19 23 23 C 1.50695 * 119.85460 * 179.97438 * 22 21 20 24 24 F 1.39912 * 109.46717 * 269.99736 * 23 22 21 25 25 C 1.38359 * 120.29039 * 0.25061 * 22 21 20 26 26 C 1.37963 * 120.14462 * 359.49121 * 25 22 21 27 27 C 1.47158 * 120.98143 * 26.22183 * 9 7 2 28 28 H 0.96999 * 120.00087 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.68196 * 350.23670 * 10 9 7 30 30 H 1.09004 * 109.68301 * 110.75591 * 10 9 7 31 31 H 1.09000 * 109.51542 * 67.61849 * 11 10 9 32 32 H 1.09003 * 109.51427 * 187.77660 * 11 10 9 33 33 H 1.09008 * 109.47477 * 179.74665 * 15 13 12 34 34 H 1.09005 * 109.46991 * 59.74795 * 15 13 12 35 35 H 0.97000 * 120.00064 * 359.97438 * 16 15 13 36 36 H 1.07998 * 120.07382 * 359.95293 * 20 19 17 37 37 H 1.07997 * 119.92685 * 180.02562 * 21 20 19 38 38 H 1.08993 * 109.47326 * 150.00179 * 23 22 21 39 39 H 1.09002 * 109.47331 * 29.99674 * 23 22 21 40 40 H 1.07997 * 119.92876 * 179.74646 * 25 22 21 41 41 H 1.08000 * 120.07221 * 180.24939 * 26 25 22 42 42 H 1.08997 * 109.68365 * 9.76175 * 27 9 7 43 43 H 1.08997 * 109.68034 * 249.20809 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2222 0.2728 9 7 1.3702 -2.3625 -0.3440 10 6 1.8342 -3.6633 0.1641 11 6 1.9815 -4.6215 -1.0234 12 8 0.7651 -4.6306 -1.7747 13 6 0.4245 -3.3680 -2.3523 14 1 1.2374 -3.0297 -2.9950 15 6 -0.8544 -3.5128 -3.1794 16 7 -0.6365 -4.4900 -4.2488 17 6 -1.6324 -4.7810 -5.1091 18 8 -2.7116 -4.2329 -4.9972 19 6 -1.4122 -5.7668 -6.1886 20 6 -2.4414 -6.0700 -7.0815 21 6 -2.2292 -6.9904 -8.0869 22 6 -0.9997 -7.6129 -8.2111 23 6 -0.7753 -8.6178 -9.3115 24 9 -1.1145 -9.8953 -8.8527 25 6 0.0228 -7.3211 -7.3258 26 6 -0.1745 -6.3986 -6.3191 27 6 0.1975 -2.3455 -1.2329 28 1 -0.4850 0.8400 -0.0004 29 1 2.7975 -3.5415 0.6592 30 1 1.1062 -4.0624 0.8704 31 1 2.8005 -4.2882 -1.6608 32 1 2.1903 -5.6265 -0.6566 33 1 -1.1160 -2.5487 -3.6158 34 1 -1.6663 -3.8528 -2.5364 35 1 0.2248 -4.9271 -4.3383 36 1 -3.4017 -5.5854 -6.9852 37 1 -3.0245 -7.2256 -8.7787 38 1 0.2736 -8.6046 -9.6072 39 1 -1.3978 -8.3625 -10.1691 40 1 0.9788 -7.8135 -7.4256 41 1 0.6257 -6.1688 -5.6313 42 1 0.0771 -1.3512 -1.6628 43 1 -0.6954 -2.6123 -0.6677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035626640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:03 Heat of formation + Delta-G solvation = -103.567532 kcal Electronic energy + Delta-G solvation = -26438.329004 eV Core-core repulsion = 22397.575991 eV Total energy + Delta-G solvation = -4040.753013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.57496 -41.35666 -40.19687 -39.35359 -36.51351 -35.93887 -33.68684 -33.24746 -32.45437 -31.88929 -29.20798 -28.21433 -26.80495 -25.09019 -23.81269 -23.75665 -22.96836 -21.70144 -21.15513 -19.22796 -18.85654 -17.60994 -17.46756 -17.20470 -17.05060 -16.77054 -16.60740 -16.16095 -16.14487 -15.94483 -15.54468 -15.34462 -15.22566 -15.02491 -14.66374 -14.60858 -14.36676 -13.97193 -13.93180 -13.41567 -13.18739 -13.03091 -12.71843 -12.52311 -12.29973 -12.19989 -12.10073 -12.06786 -11.89941 -11.81369 -11.35340 -11.14401 -10.81488 -10.57411 -10.33098 -10.03145 -9.95031 -8.77567 -7.92903 -5.40476 -0.32491 0.33618 1.44885 1.47015 1.57504 1.71900 2.00482 2.46666 2.73927 2.77763 3.21955 3.42221 3.47307 3.69445 3.72144 3.92138 4.01278 4.04032 4.14243 4.14980 4.24782 4.36594 4.43589 4.49397 4.53788 4.57196 4.65886 4.67162 4.79303 4.83245 4.95036 4.98169 5.05715 5.18604 5.21451 5.25860 5.30959 5.39435 5.50935 5.59006 5.80706 6.24345 6.30725 6.43844 7.03684 7.08745 7.72722 8.26337 9.13207 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002382 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.773149 B =11752.694214 C =12268.165214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.264 4.264 8 H 0.075 0.925 9 N -0.614 5.614 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.390 6.390 13 C 0.077 3.923 14 H 0.068 0.932 15 C 0.142 3.858 16 N -0.702 5.702 17 C 0.550 3.450 18 O -0.583 6.583 19 C -0.140 4.140 20 C -0.079 4.079 21 C -0.106 4.106 22 C -0.115 4.115 23 C 0.101 3.899 24 F -0.228 7.228 25 C -0.103 4.103 26 C -0.086 4.086 27 C 0.159 3.841 28 H 0.251 0.749 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.415 0.585 36 H 0.128 0.872 37 H 0.155 0.845 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.068 0.932 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -17.471 -19.482 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.394 4.394 8 H 0.093 0.907 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.020 4.020 12 O -0.309 6.309 13 C 0.018 3.982 14 H 0.086 0.914 15 C 0.017 3.983 16 N -0.353 5.353 17 C 0.339 3.661 18 O -0.465 6.465 19 C -0.143 4.143 20 C -0.098 4.098 21 C -0.124 4.124 22 C -0.116 4.116 23 C 0.047 3.953 24 F -0.210 7.210 25 C -0.121 4.121 26 C -0.105 4.105 27 C 0.032 3.968 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.253 0.747 36 H 0.146 0.854 37 H 0.172 0.828 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.179 0.821 41 H 0.165 0.835 42 H 0.086 0.914 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 2.167 -17.134 -19.356 25.941 hybrid contribution 0.285 1.414 0.847 1.673 sum 2.452 -15.720 -18.509 24.407 Atomic orbital electron populations 1.70189 1.06795 1.26045 1.55224 1.25863 0.96078 1.01748 1.01072 0.85164 0.78727 0.79535 0.76762 1.18671 1.21600 1.22092 1.19590 0.93080 0.85466 1.41240 0.90696 1.44363 1.33686 1.02473 1.53358 1.21842 0.98573 0.86478 0.95567 1.23100 0.85790 1.00724 0.92433 1.87796 1.43131 1.30599 1.69421 1.22744 0.95770 0.85522 0.94201 0.91443 1.21151 0.96545 0.92749 0.87816 1.45705 1.16092 1.43525 1.29999 1.18790 0.83470 0.81912 0.81965 1.90752 1.26609 1.54501 1.74621 1.19972 0.97006 0.99895 0.97464 1.21361 0.98541 0.96472 0.93381 1.21303 0.97612 0.95459 0.98017 1.20806 0.94406 0.98203 0.98197 1.21123 1.04815 0.75286 0.94118 1.92796 1.94577 1.42358 1.91222 1.21370 1.00362 0.96827 0.93559 1.21563 0.95461 0.95139 0.98330 1.21090 0.88296 0.97544 0.89888 0.93948 0.90836 0.96778 0.92495 0.86028 0.90431 0.92264 0.74738 0.85385 0.82778 0.86972 0.87351 0.82127 0.83511 0.91416 0.98273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.28 11.14 21.65 0.24 -55.04 16 2 C -0.05 -2.87 4.95 84.86 0.42 -2.46 16 3 Si 0.97 44.06 29.59 68.60 2.03 46.09 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.26 -14.18 9.65 84.04 0.81 -13.37 16 8 H 0.08 3.86 7.88 -2.91 -0.02 3.83 16 9 N -0.61 -30.44 3.05 -697.52 -2.13 -32.56 16 10 C 0.10 4.01 6.73 86.35 0.58 4.59 16 11 C 0.06 1.76 6.99 72.08 0.50 2.27 16 12 O -0.39 -13.44 10.14 -148.98 -1.51 -14.95 16 13 C 0.08 2.84 2.86 30.69 0.09 2.93 16 14 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 15 C 0.14 4.91 5.37 86.38 0.46 5.38 16 16 N -0.70 -19.94 5.40 -465.97 -2.52 -22.46 16 17 C 0.55 16.88 7.77 86.79 0.67 17.55 16 18 O -0.58 -22.69 16.35 -3.88 -0.06 -22.75 16 19 C -0.14 -3.30 5.87 -20.09 -0.12 -3.41 16 20 C -0.08 -1.69 9.60 22.53 0.22 -1.47 16 21 C -0.11 -1.62 9.68 22.23 0.22 -1.40 16 22 C -0.12 -1.49 5.60 -19.81 -0.11 -1.61 16 23 C 0.10 0.80 7.67 71.23 0.55 1.35 16 24 F -0.23 -3.46 17.34 44.97 0.78 -2.68 16 25 C -0.10 -1.34 9.68 22.23 0.22 -1.12 16 26 C -0.09 -1.46 9.54 22.53 0.21 -1.25 16 27 C 0.16 7.63 4.73 86.35 0.41 8.04 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 30 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 34 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.41 9.40 6.39 -92.71 -0.59 8.81 16 36 H 0.13 2.96 7.65 -2.91 -0.02 2.93 16 37 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.11 0.34 8.08 -2.39 -0.02 0.32 16 39 H 0.11 0.39 8.08 -2.39 -0.02 0.37 16 40 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.15 1.93 6.41 -2.91 -0.02 1.91 16 42 H 0.07 3.64 6.14 -2.39 -0.01 3.62 16 43 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -73.30 361.04 2.40 -70.90 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.44 Total: 17.46 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 5.13 Total: 16.02 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -4.40 Total: -110.07 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.57 Total: -37.71 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -73.30 2.40 -70.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035626640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.670 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds