Wall clock time and date at job start Tue Mar 31 2020 13:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00234 * 2 1 4 4 H 1.48502 * 109.47274 * 239.99994 * 3 2 1 5 5 H 1.48502 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47664 * 119.99882 * 3 2 1 7 7 C 1.38813 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00054 * 196.90775 * 7 2 1 9 9 N 1.36933 * 120.00147 * 16.90807 * 7 2 1 10 10 C 1.47145 * 120.98276 * 26.26298 * 9 7 2 11 11 C 1.53302 * 108.38806 * 129.44421 * 10 9 7 12 12 O 1.42957 * 109.26544 * 52.27263 * 11 10 9 13 13 C 1.42964 * 114.17160 * 297.50661 * 12 11 10 14 14 H 1.09000 * 109.51025 * 302.54970 * 13 12 11 15 15 C 1.52995 * 109.51051 * 182.44694 * 13 12 11 16 16 N 1.46493 * 109.47336 * 65.10042 * 15 13 12 17 17 C 1.34781 * 119.99966 * 180.27626 * 16 15 13 18 18 O 1.21553 * 120.00162 * 359.72366 * 17 16 15 19 19 C 1.47847 * 119.99857 * 179.72542 * 17 16 15 20 20 C 1.39573 * 120.14578 * 359.72277 * 19 17 16 21 21 C 1.37962 * 119.85283 * 179.78843 * 20 19 17 22 22 C 1.38356 * 120.14410 * 0.48894 * 21 20 19 23 23 C 1.50695 * 119.85187 * 179.76312 * 22 21 20 24 24 F 1.39902 * 109.47189 * 269.97601 * 23 22 21 25 25 C 1.38352 * 120.29194 * 359.74329 * 22 21 20 26 26 C 1.37960 * 120.14690 * 0.02562 * 25 22 21 27 27 C 1.47150 * 120.98262 * 206.23734 * 9 7 2 28 28 H 0.97000 * 119.99843 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.68141 * 249.16185 * 10 9 7 30 30 H 1.09002 * 109.68743 * 9.68102 * 10 9 7 31 31 H 1.08997 * 109.51350 * 172.23135 * 11 10 9 32 32 H 1.09006 * 109.50561 * 292.37822 * 11 10 9 33 33 H 1.09004 * 109.47216 * 305.10026 * 15 13 12 34 34 H 1.08997 * 109.47094 * 185.10302 * 15 13 12 35 35 H 0.97001 * 120.00131 * 0.02562 * 16 15 13 36 36 H 1.08003 * 120.07559 * 359.97438 * 20 19 17 37 37 H 1.08008 * 119.92593 * 180.22600 * 21 20 19 38 38 H 1.09004 * 109.47416 * 29.97846 * 23 22 21 39 39 H 1.09003 * 109.46925 * 149.97472 * 23 22 21 40 40 H 1.08001 * 119.92851 * 180.02562 * 25 22 21 41 41 H 1.08004 * 120.07243 * 180.02562 * 26 25 22 42 42 H 1.09001 * 109.68341 * 110.83567 * 27 9 7 43 43 H 1.09006 * 109.71303 * 350.29821 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2224 0.2726 9 7 1.3699 -2.3626 -0.3438 10 6 0.1978 -2.3457 -1.2332 11 6 0.4254 -3.3679 -2.3528 12 8 0.7667 -4.6308 -1.7762 13 6 1.9821 -4.6213 -1.0234 14 1 2.8019 -4.2882 -1.6599 15 6 2.2753 -6.0319 -0.5087 16 7 2.5321 -6.9223 -1.6434 17 6 2.8096 -8.2237 -1.4294 18 8 2.8518 -8.6576 -0.2947 19 6 3.0628 -9.1236 -2.5748 20 6 3.0094 -8.6298 -3.8792 21 6 3.2510 -9.4739 -4.9434 22 6 3.5356 -10.8094 -4.7203 23 6 3.7932 -11.7267 -5.8879 24 9 2.5864 -12.2953 -6.3092 25 6 3.5853 -11.3062 -3.4301 26 6 3.3504 -10.4718 -2.3568 27 6 1.8340 -3.6633 0.1641 28 1 -0.4850 0.8401 0.0004 29 1 -0.6955 -2.6128 -0.6685 30 1 0.0769 -1.3511 -1.6625 31 1 -0.4854 -3.4710 -2.9424 32 1 1.2391 -3.0297 -2.9945 33 1 1.4170 -6.3990 0.0542 34 1 3.1513 -6.0074 0.1394 35 1 2.4988 -6.5760 -2.5488 36 1 2.7825 -7.5886 -4.0550 37 1 3.2136 -9.0923 -5.9532 38 1 4.2323 -11.1575 -6.7073 39 1 4.4807 -12.5163 -5.5847 40 1 3.8085 -12.3496 -3.2626 41 1 3.3899 -10.8609 -1.3500 42 1 1.1055 -4.0631 0.8696 43 1 2.7970 -3.5420 0.6601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035626641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:07 Heat of formation + Delta-G solvation = -82.428719 kcal Electronic energy + Delta-G solvation = -26264.781284 eV Core-core repulsion = 22224.944919 eV Total energy + Delta-G solvation = -4039.836365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.04777 -40.39584 -38.91093 -38.26387 -35.02452 -34.35662 -32.89665 -31.66111 -31.31882 -30.60918 -27.93082 -27.06871 -25.37829 -23.26954 -23.10889 -22.77388 -21.75243 -20.57333 -19.68109 -18.24082 -16.96495 -16.77408 -16.56175 -16.26807 -16.10373 -15.84954 -15.28509 -14.98669 -14.92178 -14.69092 -14.38302 -14.30321 -13.92033 -13.79495 -13.40420 -13.20304 -13.08255 -12.92612 -12.73585 -12.30940 -11.78484 -11.60240 -11.51844 -11.32496 -11.15846 -10.87988 -10.77472 -10.45566 -10.32864 -10.09092 -10.00395 -9.70334 -9.40854 -9.36843 -9.12600 -9.01237 -8.58242 -6.80279 -5.88402 -3.32277 0.41524 0.97719 2.63005 3.08506 3.32308 3.38323 3.39004 3.54279 3.97241 4.17193 4.19627 4.39199 4.42526 4.53148 4.57538 4.69885 4.94392 5.07739 5.14215 5.16385 5.28849 5.36621 5.42912 5.47275 5.57860 5.74206 5.78766 5.85380 5.95180 6.00197 6.01766 6.10095 6.23015 6.31944 6.40441 6.43773 6.47500 6.70707 7.05462 7.45001 7.47590 7.66191 7.79957 8.13225 8.29073 9.06992 9.69639 10.26372 11.19773 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026363 B = 0.002195 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.831154 B =12751.645776 C =13171.035187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.907 3.093 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.064 3.936 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.713 5.713 17 C 0.553 3.447 18 O -0.539 6.539 19 C -0.118 4.118 20 C -0.087 4.087 21 C -0.104 4.104 22 C -0.118 4.118 23 C 0.105 3.895 24 F -0.210 7.210 25 C -0.106 4.106 26 C -0.063 4.063 27 C 0.122 3.878 28 H 0.256 0.744 29 H 0.029 0.971 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.402 0.598 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.031 0.969 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.815 -20.292 -12.043 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.004 3.996 14 H 0.077 0.923 15 C 0.006 3.994 16 N -0.364 5.364 17 C 0.340 3.660 18 O -0.418 6.418 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.119 4.119 23 C 0.050 3.950 24 F -0.191 7.191 25 C -0.124 4.124 26 C -0.082 4.082 27 C -0.006 4.006 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.238 0.762 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.048 0.952 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.580 -20.564 -11.222 24.623 hybrid contribution 0.365 1.419 -0.409 1.521 sum 7.946 -19.146 -11.631 23.769 Atomic orbital electron populations 1.70025 1.05278 1.25838 1.53516 1.25057 0.95364 0.98519 1.00696 0.86307 0.78866 0.83036 0.78188 1.20979 1.21533 1.20762 1.19152 0.92629 0.84446 1.42404 0.91361 1.44056 1.33603 1.00992 1.53097 1.21449 0.89148 0.98316 0.89749 1.23333 0.99026 0.84863 0.96604 1.87791 1.41285 1.32622 1.69244 1.22813 0.87571 0.93773 0.95395 0.92325 1.21473 1.01851 0.87834 0.88241 1.45890 1.70686 1.08783 1.11064 1.18240 0.77139 0.82062 0.88574 1.90776 1.51850 1.75762 1.23379 1.20118 1.03769 0.94925 0.93319 1.21381 0.97389 1.00176 0.91585 1.21003 0.99078 0.92713 0.99434 1.20437 1.01281 0.94996 0.95138 1.20845 0.83189 0.95873 0.95109 1.92829 1.48476 1.86466 1.91320 1.21042 0.99813 1.00075 0.91489 1.21302 0.94954 0.91844 1.00056 1.21439 0.99016 0.87213 0.92889 0.93397 0.95334 0.88732 0.89995 0.94105 0.90401 0.89869 0.76202 0.85006 0.85015 0.89610 0.89639 0.85031 0.84190 0.95162 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 11.14 55.49 0.62 -25.06 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 3 Si 0.91 21.16 29.59 -169.99 -5.03 16.14 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 8 H 0.07 1.78 7.88 -52.48 -0.41 1.36 16 9 N -0.59 -14.60 3.05 -171.82 -0.52 -15.13 16 10 C 0.14 3.25 5.45 -3.53 -0.02 3.23 16 11 C 0.04 0.74 6.98 37.31 0.26 1.00 16 12 O -0.39 -7.10 10.33 -35.23 -0.36 -7.47 16 13 C 0.06 1.09 2.81 -26.58 -0.07 1.02 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.92 5.34 -4.05 -0.02 1.90 16 16 N -0.71 -9.32 5.46 -61.26 -0.33 -9.66 16 17 C 0.55 7.69 7.77 -12.33 -0.10 7.60 16 18 O -0.54 -9.25 16.35 5.32 0.09 -9.17 16 19 C -0.12 -1.32 5.87 -104.97 -0.62 -1.94 16 20 C -0.09 -0.78 9.54 -39.18 -0.37 -1.16 16 21 C -0.10 -0.81 9.68 -39.64 -0.38 -1.19 16 22 C -0.12 -0.90 5.60 -104.54 -0.59 -1.48 16 23 C 0.10 0.58 7.67 36.00 0.28 0.86 16 24 F -0.21 -1.85 17.34 2.25 0.04 -1.81 16 25 C -0.11 -0.85 9.68 -39.64 -0.38 -1.24 16 26 C -0.06 -0.64 9.60 -39.19 -0.38 -1.01 16 27 C 0.12 2.49 6.02 -3.53 -0.02 2.46 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.40 4.50 6.51 -40.82 -0.27 4.23 16 36 H 0.13 0.98 6.41 -52.48 -0.34 0.65 16 37 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 38 H 0.09 0.31 8.08 -51.93 -0.42 -0.11 16 39 H 0.09 0.30 8.08 -51.93 -0.42 -0.12 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.14 1.41 7.65 -52.48 -0.40 1.01 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -32.54 361.33 -8.64 -41.17 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.93 Total: 2.54 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.65 Total: 3.00 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.24 Total: -49.84 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.28 Total: -16.63 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.54 -8.64 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035626641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.255 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds