Wall clock time and date at job start Tue Mar 31 2020 13:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00234 * 2 1 4 4 H 1.48502 * 109.47274 * 239.99994 * 3 2 1 5 5 H 1.48502 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47664 * 119.99882 * 3 2 1 7 7 C 1.38813 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00054 * 196.90775 * 7 2 1 9 9 N 1.36933 * 120.00147 * 16.90807 * 7 2 1 10 10 C 1.47145 * 120.98276 * 26.26298 * 9 7 2 11 11 C 1.53302 * 108.38806 * 129.44421 * 10 9 7 12 12 O 1.42957 * 109.26544 * 52.27263 * 11 10 9 13 13 C 1.42964 * 114.17160 * 297.50661 * 12 11 10 14 14 H 1.09000 * 109.51025 * 302.54970 * 13 12 11 15 15 C 1.52995 * 109.51051 * 182.44694 * 13 12 11 16 16 N 1.46493 * 109.47336 * 65.10042 * 15 13 12 17 17 C 1.34781 * 119.99966 * 180.27626 * 16 15 13 18 18 O 1.21553 * 120.00162 * 359.72366 * 17 16 15 19 19 C 1.47847 * 119.99857 * 179.72542 * 17 16 15 20 20 C 1.39573 * 120.14578 * 359.72277 * 19 17 16 21 21 C 1.37962 * 119.85283 * 179.78843 * 20 19 17 22 22 C 1.38356 * 120.14410 * 0.48894 * 21 20 19 23 23 C 1.50695 * 119.85187 * 179.76312 * 22 21 20 24 24 F 1.39902 * 109.47189 * 269.97601 * 23 22 21 25 25 C 1.38352 * 120.29194 * 359.74329 * 22 21 20 26 26 C 1.37960 * 120.14690 * 0.02562 * 25 22 21 27 27 C 1.47150 * 120.98262 * 206.23734 * 9 7 2 28 28 H 0.97000 * 119.99843 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.68141 * 249.16185 * 10 9 7 30 30 H 1.09002 * 109.68743 * 9.68102 * 10 9 7 31 31 H 1.08997 * 109.51350 * 172.23135 * 11 10 9 32 32 H 1.09006 * 109.50561 * 292.37822 * 11 10 9 33 33 H 1.09004 * 109.47216 * 305.10026 * 15 13 12 34 34 H 1.08997 * 109.47094 * 185.10302 * 15 13 12 35 35 H 0.97001 * 120.00131 * 0.02562 * 16 15 13 36 36 H 1.08003 * 120.07559 * 359.97438 * 20 19 17 37 37 H 1.08008 * 119.92593 * 180.22600 * 21 20 19 38 38 H 1.09004 * 109.47416 * 29.97846 * 23 22 21 39 39 H 1.09003 * 109.46925 * 149.97472 * 23 22 21 40 40 H 1.08001 * 119.92851 * 180.02562 * 25 22 21 41 41 H 1.08004 * 120.07243 * 180.02562 * 26 25 22 42 42 H 1.09001 * 109.68341 * 110.83567 * 27 9 7 43 43 H 1.09006 * 109.71303 * 350.29821 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2224 0.2726 9 7 1.3699 -2.3626 -0.3438 10 6 0.1978 -2.3457 -1.2332 11 6 0.4254 -3.3679 -2.3528 12 8 0.7667 -4.6308 -1.7762 13 6 1.9821 -4.6213 -1.0234 14 1 2.8019 -4.2882 -1.6599 15 6 2.2753 -6.0319 -0.5087 16 7 2.5321 -6.9223 -1.6434 17 6 2.8096 -8.2237 -1.4294 18 8 2.8518 -8.6576 -0.2947 19 6 3.0628 -9.1236 -2.5748 20 6 3.0094 -8.6298 -3.8792 21 6 3.2510 -9.4739 -4.9434 22 6 3.5356 -10.8094 -4.7203 23 6 3.7932 -11.7267 -5.8879 24 9 2.5864 -12.2953 -6.3092 25 6 3.5853 -11.3062 -3.4301 26 6 3.3504 -10.4718 -2.3568 27 6 1.8340 -3.6633 0.1641 28 1 -0.4850 0.8401 0.0004 29 1 -0.6955 -2.6128 -0.6685 30 1 0.0769 -1.3511 -1.6625 31 1 -0.4854 -3.4710 -2.9424 32 1 1.2391 -3.0297 -2.9945 33 1 1.4170 -6.3990 0.0542 34 1 3.1513 -6.0074 0.1394 35 1 2.4988 -6.5760 -2.5488 36 1 2.7825 -7.5886 -4.0550 37 1 3.2136 -9.0923 -5.9532 38 1 4.2323 -11.1575 -6.7073 39 1 4.4807 -12.5163 -5.5847 40 1 3.8085 -12.3496 -3.2626 41 1 3.3899 -10.8609 -1.3500 42 1 1.1055 -4.0631 0.8696 43 1 2.7970 -3.5420 0.6601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035626641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:06 Heat of formation + Delta-G solvation = -103.358268 kcal Electronic energy + Delta-G solvation = -26265.688857 eV Core-core repulsion = 22224.944919 eV Total energy + Delta-G solvation = -4040.743938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.58203 -41.34689 -40.20018 -39.34987 -36.55632 -35.87569 -33.73345 -33.26093 -32.36093 -31.86777 -29.36072 -28.15230 -26.77275 -24.99906 -23.87016 -23.75826 -22.98192 -21.74281 -21.11323 -19.22397 -18.80380 -17.62518 -17.49276 -17.22718 -16.91897 -16.76814 -16.69295 -16.23428 -16.08828 -15.96871 -15.53753 -15.36436 -15.20420 -15.00647 -14.70181 -14.56064 -14.36596 -13.95040 -13.92076 -13.38212 -13.23922 -13.01180 -12.67568 -12.54713 -12.29691 -12.20125 -12.12935 -12.07703 -11.88794 -11.81660 -11.38038 -11.12317 -10.81469 -10.55205 -10.31750 -10.02824 -9.94297 -8.77140 -7.92295 -5.39845 -0.31979 0.33872 1.47031 1.48689 1.55926 1.72615 2.02379 2.47565 2.73737 2.77680 3.22754 3.42512 3.46528 3.69437 3.72457 3.91488 3.96259 4.03721 4.13593 4.14812 4.23327 4.36772 4.46162 4.50059 4.54077 4.59223 4.67075 4.70183 4.74011 4.82810 4.88412 4.98341 5.03710 5.18995 5.22710 5.26867 5.31504 5.39909 5.54303 5.60137 5.80941 6.23759 6.31301 6.43515 7.04885 7.08612 7.72910 8.26520 9.13705 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026363 B = 0.002195 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.831154 B =12751.645776 C =13171.035187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.268 4.268 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.080 3.920 14 H 0.072 0.928 15 C 0.140 3.860 16 N -0.705 5.705 17 C 0.553 3.447 18 O -0.581 6.581 19 C -0.141 4.141 20 C -0.087 4.087 21 C -0.105 4.105 22 C -0.116 4.116 23 C 0.100 3.900 24 F -0.229 7.229 25 C -0.107 4.107 26 C -0.077 4.077 27 C 0.116 3.884 28 H 0.252 0.748 29 H -0.002 1.002 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.154 0.846 41 H 0.130 0.870 42 H 0.017 0.983 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.475 -21.373 -14.482 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.310 6.310 13 C 0.020 3.980 14 H 0.090 0.910 15 C 0.015 3.985 16 N -0.357 5.357 17 C 0.341 3.659 18 O -0.462 6.462 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.116 4.116 23 C 0.046 3.954 24 F -0.210 7.210 25 C -0.124 4.124 26 C -0.096 4.096 27 C -0.010 4.010 28 H 0.061 0.939 29 H 0.016 0.984 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.251 0.749 36 H 0.164 0.836 37 H 0.176 0.824 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.172 0.828 41 H 0.148 0.852 42 H 0.035 0.965 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.258 -21.668 -13.691 27.251 hybrid contribution -0.140 1.676 0.361 1.720 sum 9.118 -19.992 -13.329 25.700 Atomic orbital electron populations 1.70189 1.06752 1.26173 1.55066 1.25852 0.96113 1.01700 1.00980 0.85264 0.77479 0.78760 0.78468 1.19998 1.22095 1.20173 1.19521 0.93051 0.85503 1.41637 0.90890 1.44339 1.33690 1.01881 1.53803 1.21325 0.87900 0.98475 0.90659 1.23167 1.00826 0.83516 0.94829 1.87808 1.41903 1.32085 1.69170 1.22643 0.87517 0.93983 0.93848 0.90969 1.21239 1.01638 0.86857 0.88736 1.45748 1.70350 1.08481 1.11093 1.18689 0.76065 0.82230 0.88878 1.90748 1.53820 1.76452 1.25186 1.19991 1.06342 0.94905 0.93187 1.21561 0.96949 1.01175 0.90891 1.21365 0.97968 0.92689 1.00279 1.20791 0.99740 0.95458 0.95657 1.21127 0.82630 0.96551 0.95107 1.92794 1.49915 1.86805 1.91474 1.21307 0.99033 1.00910 0.91195 1.21366 0.95810 0.91971 1.00474 1.21601 0.98838 0.86300 0.94294 0.93914 0.98436 0.91345 0.87307 0.92840 0.91882 0.89075 0.74880 0.83591 0.82363 0.87082 0.87305 0.82791 0.85181 0.96516 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.62 11.14 21.65 0.24 -54.38 16 2 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 3 Si 0.97 43.71 29.59 68.60 2.03 45.74 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.27 -14.37 9.65 84.03 0.81 -13.56 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 9 N -0.61 -30.39 3.05 -697.53 -2.13 -32.52 16 10 C 0.14 6.75 5.45 86.36 0.47 7.22 16 11 C 0.05 1.94 6.98 72.08 0.50 2.45 16 12 O -0.39 -13.62 10.33 -148.98 -1.54 -15.15 16 13 C 0.08 2.60 2.81 30.69 0.09 2.68 16 14 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 15 C 0.14 4.04 5.34 86.38 0.46 4.50 16 16 N -0.71 -17.66 5.46 -465.99 -2.54 -20.20 16 17 C 0.55 15.26 7.77 86.79 0.67 15.94 16 18 O -0.58 -20.37 16.35 -3.88 -0.06 -20.43 16 19 C -0.14 -3.05 5.87 -20.09 -0.12 -3.17 16 20 C -0.09 -1.39 9.54 22.53 0.21 -1.17 16 21 C -0.11 -1.31 9.68 22.23 0.22 -1.09 16 22 C -0.12 -1.42 5.60 -19.81 -0.11 -1.53 16 23 C 0.10 0.76 7.67 71.23 0.55 1.31 16 24 F -0.23 -3.42 17.34 44.97 0.78 -2.64 16 25 C -0.11 -1.51 9.68 22.23 0.22 -1.29 16 26 C -0.08 -1.53 9.60 22.53 0.22 -1.31 16 27 C 0.12 4.74 6.02 86.36 0.52 5.26 16 28 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.07 3.60 6.14 -2.39 -0.01 3.58 16 31 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.41 8.40 6.51 -92.71 -0.60 7.79 16 36 H 0.15 1.79 6.41 -2.91 -0.02 1.77 16 37 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.11 0.31 8.08 -2.39 -0.02 0.29 16 39 H 0.11 0.34 8.08 -2.39 -0.02 0.32 16 40 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.13 2.73 7.65 -2.91 -0.02 2.70 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 2.82 7.96 -2.38 -0.02 2.80 16 Total: -1.00 -71.92 361.33 2.33 -69.58 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.43 Total: 16.14 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 5.13 Total: 13.85 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.43 Total: -107.09 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.60 Total: -35.59 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -71.92 2.33 -69.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035626641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.774 kcal (2) G-P(sol) polarization free energy of solvation -71.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds