Wall clock time and date at job start Tue Mar 31 2020 13:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99897 * 2 1 4 4 H 1.48498 * 109.47483 * 265.97597 * 3 2 1 5 5 H 1.48498 * 109.47199 * 25.97854 * 3 2 1 6 6 H 1.48507 * 109.46938 * 145.97392 * 3 2 1 7 7 C 1.38813 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99883 * 344.06510 * 7 2 1 9 9 N 1.36937 * 120.00479 * 164.06969 * 7 2 1 10 10 C 1.47154 * 120.97476 * 328.73165 * 9 7 2 11 11 C 1.53298 * 108.38151 * 230.55290 * 10 9 7 12 12 O 1.42954 * 109.22410 * 307.70203 * 11 10 9 13 13 C 1.42964 * 114.16781 * 62.58143 * 12 11 10 14 14 C 1.47143 * 120.98435 * 148.75235 * 9 7 2 15 15 H 1.08997 * 109.68339 * 249.16513 * 14 9 7 16 16 C 1.52998 * 109.68478 * 9.72270 * 14 9 7 17 17 N 1.46506 * 109.46878 * 299.41681 * 16 14 9 18 18 C 1.34773 * 120.00114 * 179.97438 * 17 16 14 19 19 O 1.21554 * 119.99497 * 0.02562 * 18 17 16 20 20 C 1.47841 * 120.00046 * 180.02562 * 18 17 16 21 21 C 1.39568 * 120.14514 * 359.72149 * 20 18 17 22 22 C 1.37962 * 119.85414 * 179.74818 * 21 20 18 23 23 C 1.38366 * 120.14232 * 0.52882 * 22 21 20 24 24 C 1.50694 * 119.85333 * 179.76428 * 23 22 21 25 25 F 1.39900 * 109.47320 * 269.98300 * 24 23 22 26 26 C 1.38357 * 120.29161 * 359.75256 * 23 22 21 27 27 C 1.37963 * 120.14564 * 359.96874 * 26 23 22 28 28 H 0.96997 * 119.99517 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.68557 * 350.28059 * 10 9 7 30 30 H 1.09005 * 109.67949 * 110.83608 * 10 9 7 31 31 H 1.08998 * 109.50857 * 67.63197 * 11 10 9 32 32 H 1.08998 * 109.51077 * 187.77372 * 11 10 9 33 33 H 1.09000 * 109.51294 * 177.49506 * 13 12 11 34 34 H 1.08995 * 109.55239 * 57.36887 * 13 12 11 35 35 H 1.08999 * 109.47143 * 59.41260 * 16 14 9 36 36 H 1.08998 * 109.47308 * 179.41577 * 16 14 9 37 37 H 0.97000 * 119.99592 * 0.02562 * 17 16 14 38 38 H 1.08004 * 120.07582 * 0.02562 * 21 20 18 39 39 H 1.07994 * 119.92997 * 180.27719 * 22 21 20 40 40 H 1.09003 * 109.46881 * 29.98146 * 24 23 22 41 41 H 1.08994 * 109.47043 * 149.98384 * 24 23 22 42 42 H 1.08003 * 119.92806 * 179.97438 * 26 23 22 43 43 H 1.08003 * 120.07304 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5828 1.9974 -1.3966 5 1 1.4077 2.6757 0.6133 6 1 3.5026 1.4662 0.7835 7 6 2.0103 -1.2021 -0.0005 8 1 1.5014 -2.1196 0.2559 9 7 3.3402 -1.2248 -0.3260 10 6 3.9023 -0.2589 -1.2833 11 6 4.7034 -1.0325 -2.3368 12 8 5.6377 -1.8922 -1.6798 13 6 5.0335 -2.8943 -0.8584 14 6 4.2493 -2.2161 0.2708 15 1 4.9409 -1.7178 0.9501 16 6 3.4387 -3.2636 1.0365 17 7 2.6822 -2.6089 2.1068 18 6 1.8909 -3.3397 2.9169 19 8 1.8054 -4.5420 2.7598 20 6 1.1271 -2.6790 3.9966 21 6 1.2276 -1.2995 4.1833 22 6 0.5081 -0.6884 5.1894 23 6 -0.3033 -1.4416 6.0193 24 6 -1.0822 -0.7680 7.1196 25 9 -0.3113 -0.7397 8.2867 26 6 -0.4029 -2.8103 5.8433 27 6 0.3068 -3.4329 4.8374 28 1 -0.4849 0.8401 0.0004 29 1 3.0949 0.2910 -1.7669 30 1 4.5589 0.4365 -0.7604 31 1 4.0239 -1.6299 -2.9446 32 1 5.2407 -0.3300 -2.9738 33 1 5.8084 -3.5313 -0.4319 34 1 4.3554 -3.4993 -1.4603 35 1 2.7480 -3.7587 0.3539 36 1 4.1145 -4.0017 1.4683 37 1 2.7502 -1.6494 2.2318 38 1 1.8638 -0.7110 3.5388 39 1 0.5816 0.3796 5.3321 40 1 -1.3262 0.2513 6.8205 41 1 -2.0022 -1.3223 7.3052 42 1 -1.0378 -3.3925 6.4948 43 1 0.2279 -4.5014 4.7008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051263648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:10 Heat of formation + Delta-G solvation = -70.372068 kcal Electronic energy + Delta-G solvation = -27771.967280 eV Core-core repulsion = 23732.653730 eV Total energy + Delta-G solvation = -4039.313550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.73237 -39.92154 -38.92678 -37.97563 -35.51936 -33.75862 -32.50447 -31.71419 -31.13920 -30.67482 -27.69807 -27.04920 -25.29931 -23.49997 -22.65662 -22.56764 -21.81721 -20.04002 -19.79003 -17.83652 -16.77016 -16.38592 -16.19444 -16.04053 -15.89485 -15.81960 -15.21632 -15.09489 -14.68665 -14.46140 -14.21758 -14.11480 -14.01726 -13.74578 -13.45498 -13.20018 -12.65168 -12.61469 -12.47959 -12.09320 -11.91754 -11.61439 -11.38019 -11.20293 -11.10326 -10.88441 -10.82882 -10.60205 -10.41688 -9.87711 -9.70777 -9.60956 -9.29765 -8.88688 -8.86564 -8.74386 -8.32622 -7.08406 -6.10742 -3.55692 0.93444 1.48544 3.14254 3.17120 3.32506 3.34050 3.66874 4.09728 4.24910 4.34101 4.39810 4.59566 4.60309 4.77897 5.02797 5.04808 5.13884 5.19966 5.36832 5.47123 5.49774 5.52903 5.59813 5.65135 5.74040 5.83658 5.86229 5.87932 5.96596 6.05647 6.07621 6.17725 6.30273 6.37743 6.45449 6.46735 6.52677 6.66651 6.92238 7.02403 7.55167 7.74657 8.11927 8.18544 8.71165 8.74903 9.50824 9.88424 11.02839 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.004079 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.922580 B = 6863.587068 C = 8031.094530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.032 3.968 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.270 4.270 8 H 0.097 0.903 9 N -0.607 5.607 10 C 0.090 3.910 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.127 3.873 15 H 0.047 0.953 16 C 0.136 3.864 17 N -0.687 5.687 18 C 0.554 3.446 19 O -0.558 6.558 20 C -0.109 4.109 21 C -0.074 4.074 22 C -0.104 4.104 23 C -0.122 4.122 24 C 0.106 3.894 25 F -0.213 7.213 26 C -0.111 4.111 27 C -0.066 4.066 28 H 0.264 0.736 29 H 0.083 0.917 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -1.369 8.163 8.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.169 4.169 3 Si 0.710 3.290 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.398 4.398 8 H 0.114 0.886 9 N -0.334 5.334 10 C -0.036 4.036 11 C -0.032 4.032 12 O -0.306 6.306 13 C -0.025 4.025 14 C 0.021 3.979 15 H 0.064 0.936 16 C 0.012 3.988 17 N -0.338 5.338 18 C 0.341 3.659 19 O -0.439 6.439 20 C -0.112 4.112 21 C -0.093 4.093 22 C -0.122 4.122 23 C -0.123 4.123 24 C 0.051 3.949 25 F -0.194 7.194 26 C -0.129 4.129 27 C -0.085 4.085 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.146 0.854 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.532 -2.084 8.044 8.687 hybrid contribution 0.069 1.665 -0.140 1.672 sum 2.601 -0.419 7.904 8.332 Atomic orbital electron populations 1.69796 1.05567 1.26654 1.51933 1.25352 0.95150 0.97363 0.99003 0.87077 0.79478 0.84715 0.77765 1.21283 1.23065 1.19696 1.19021 0.82400 0.94735 1.43670 0.88572 1.44439 1.06011 1.35908 1.47046 1.22092 0.97225 0.92812 0.91434 1.23063 0.92197 0.93244 0.94706 1.87829 1.33381 1.46030 1.63384 1.22906 0.97097 0.89995 0.92455 1.21464 0.92056 0.90875 0.93544 0.93568 1.21168 0.94412 0.94257 0.88968 1.45873 1.44858 1.12217 1.30862 1.18144 0.79533 0.86519 0.81747 1.90706 1.65847 1.14431 1.72911 1.20094 0.99786 0.93998 0.97314 1.21416 0.97864 0.93675 0.96310 1.20960 0.96248 0.99981 0.95053 1.20332 0.99495 0.94635 0.97802 1.20826 0.92177 1.02098 0.79767 1.92803 1.78179 1.98027 1.50417 1.20937 1.00009 0.93610 0.98333 1.21225 0.93740 1.00610 0.92929 0.92560 0.89904 0.94870 0.92982 0.89748 0.89320 0.92863 0.90941 0.91841 0.74979 0.84912 0.85393 0.89724 0.89810 0.85450 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 13.97 55.49 0.78 -24.37 16 2 C 0.03 0.82 5.30 -17.43 -0.09 0.73 16 3 Si 0.88 20.28 24.27 -169.99 -4.13 16.16 16 4 H -0.29 -6.46 6.42 56.52 0.36 -6.09 16 5 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.14 6.79 56.52 0.38 -5.75 16 7 C -0.27 -6.62 7.51 -15.06 -0.11 -6.73 16 8 H 0.10 2.60 6.02 -52.48 -0.32 2.29 16 9 N -0.61 -12.91 2.77 -164.30 -0.46 -13.36 16 10 C 0.09 1.81 4.38 -3.53 -0.02 1.79 16 11 C 0.05 0.79 6.98 37.31 0.26 1.05 16 12 O -0.39 -6.77 10.74 -35.23 -0.38 -7.15 16 13 C 0.05 0.87 6.29 37.31 0.23 1.10 16 14 C 0.13 2.28 3.21 -67.43 -0.22 2.06 16 15 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 16 C 0.14 2.42 4.45 -4.04 -0.02 2.41 16 17 N -0.69 -12.89 3.72 -61.25 -0.23 -13.12 16 18 C 0.55 10.76 7.77 -12.33 -0.10 10.66 16 19 O -0.56 -12.07 16.35 5.32 0.09 -11.98 16 20 C -0.11 -1.88 5.87 -104.97 -0.62 -2.50 16 21 C -0.07 -1.19 9.54 -39.19 -0.37 -1.56 16 22 C -0.10 -1.46 9.68 -39.64 -0.38 -1.84 16 23 C -0.12 -1.56 5.60 -104.53 -0.59 -2.14 16 24 C 0.11 1.06 7.67 36.00 0.28 1.33 16 25 F -0.21 -2.61 17.34 2.25 0.04 -2.57 16 26 C -0.11 -1.43 9.68 -39.64 -0.38 -1.81 16 27 C -0.07 -1.01 9.60 -39.18 -0.38 -1.39 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.08 1.80 4.85 -51.93 -0.25 1.55 16 30 H 0.03 0.68 6.89 -51.93 -0.36 0.32 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.44 7.57 -51.93 -0.39 1.05 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.41 7.80 5.35 -40.82 -0.22 7.58 16 38 H 0.13 2.14 6.41 -52.48 -0.34 1.81 16 39 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 42 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.14 2.01 7.65 -52.48 -0.40 1.61 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -30.50 347.17 -7.24 -37.75 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -5.69 Total: 10.24 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -2.50 Total: 3.17 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.09 Total: -50.85 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.29 Total: -19.13 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.13 Total: 16.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.50 -7.24 -37.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051263648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.626 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds