Wall clock time and date at job start Tue Mar 31 2020 13:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00339 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99692 * 3 2 1 5 5 H 1.48505 * 109.46881 * 29.99410 * 3 2 1 6 6 H 1.48493 * 109.47349 * 149.99380 * 3 2 1 7 7 C 1.38811 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00485 * 190.84336 * 7 2 1 9 9 N 1.36937 * 120.00144 * 10.83947 * 7 2 1 10 10 C 1.47155 * 120.97930 * 31.03648 * 9 7 2 11 11 C 1.53295 * 108.38684 * 129.48618 * 10 9 7 12 12 O 1.42959 * 109.21880 * 52.29950 * 11 10 9 13 13 C 1.42960 * 114.17084 * 297.41923 * 12 11 10 14 14 C 1.47154 * 120.98867 * 211.05933 * 9 7 2 15 15 H 1.08991 * 109.71284 * 110.76852 * 14 9 7 16 16 C 1.52998 * 109.67604 * 350.23817 * 14 9 7 17 17 N 1.46499 * 109.47456 * 61.31363 * 16 14 9 18 18 C 1.34780 * 120.00066 * 180.02562 * 17 16 14 19 19 O 1.21545 * 120.00096 * 359.97438 * 18 17 16 20 20 C 1.47844 * 119.99911 * 180.02562 * 18 17 16 21 21 C 1.39578 * 120.14666 * 359.71394 * 20 18 17 22 22 C 1.37952 * 119.85358 * 179.75265 * 21 20 18 23 23 C 1.38356 * 120.14528 * 0.52894 * 22 21 20 24 24 C 1.50703 * 119.85389 * 179.76564 * 23 22 21 25 25 F 1.39901 * 109.47266 * 269.97858 * 24 23 22 26 26 C 1.38352 * 120.29290 * 359.74709 * 23 22 21 27 27 C 1.37963 * 120.14610 * 359.97438 * 26 23 22 28 28 H 0.97004 * 119.99839 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.68149 * 9.76580 * 10 9 7 30 30 H 1.08997 * 109.71546 * 249.22710 * 10 9 7 31 31 H 1.09001 * 109.51194 * 292.38141 * 11 10 9 32 32 H 1.08991 * 109.51604 * 172.22787 * 11 10 9 33 33 H 1.08998 * 109.51477 * 302.65740 * 13 12 11 34 34 H 1.09000 * 109.50996 * 182.50732 * 13 12 11 35 35 H 1.09004 * 109.47132 * 181.31337 * 16 14 9 36 36 H 1.08999 * 109.47648 * 301.30914 * 16 14 9 37 37 H 0.97006 * 119.99895 * 359.97438 * 17 16 14 38 38 H 1.08001 * 120.06724 * 0.02562 * 21 20 18 39 39 H 1.08003 * 119.92836 * 180.28029 * 22 21 20 40 40 H 1.09004 * 109.46741 * 29.98236 * 24 23 22 41 41 H 1.08999 * 109.47056 * 149.98020 * 24 23 22 42 42 H 1.08007 * 119.93181 * 180.02562 * 26 23 22 43 43 H 1.07998 * 120.07549 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0757 -1.2105 0.1765 9 7 1.3439 -2.3776 -0.2220 10 6 0.1534 -2.4216 -1.0858 11 6 0.3400 -3.5476 -2.1092 12 8 0.6716 -4.7570 -1.4230 13 6 1.9034 -4.7007 -0.6996 14 6 1.7967 -3.6339 0.3961 15 1 1.0774 -3.9528 1.1503 16 6 3.1658 -3.4241 1.0460 17 7 3.0575 -2.4081 2.0958 18 6 4.1462 -2.0568 2.8086 19 8 5.2177 -2.5833 2.5806 20 6 4.0368 -1.0319 3.8684 21 6 2.8088 -0.4218 4.1295 22 6 2.7125 0.5301 5.1233 23 6 3.8319 0.8884 5.8532 24 6 3.7203 1.9329 6.9338 25 9 3.9599 3.1978 6.3863 26 6 5.0533 0.2917 5.5956 27 6 5.1622 -0.6659 4.6084 28 1 -0.4850 0.8401 -0.0004 29 1 0.0405 -1.4694 -1.6042 30 1 -0.7323 -2.6179 -0.4816 31 1 1.1453 -3.2859 -2.7956 32 1 -0.5848 -3.6881 -2.6686 33 1 2.7143 -4.4433 -1.3808 34 1 2.1031 -5.6710 -0.2448 35 1 3.5085 -4.3623 1.4824 36 1 3.8792 -3.0924 0.2916 37 1 2.2024 -1.9876 2.2775 38 1 1.9351 -0.6976 3.5576 39 1 1.7619 0.9997 5.3294 40 1 2.7185 1.9063 7.3626 41 1 4.4546 1.7293 7.7131 42 1 5.9233 0.5755 6.1692 43 1 6.1160 -1.1312 4.4086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051263649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:13 Heat of formation + Delta-G solvation = -77.135730 kcal Electronic energy + Delta-G solvation = -27788.990976 eV Core-core repulsion = 23749.384132 eV Total energy + Delta-G solvation = -4039.606844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.75379 -39.95740 -38.71855 -37.95765 -35.38307 -33.68601 -32.54891 -31.53641 -30.89286 -30.40292 -27.45791 -26.99589 -25.25320 -23.49789 -22.67513 -22.44199 -21.55895 -19.96362 -19.67254 -17.87927 -16.67059 -16.41486 -16.15598 -15.94193 -15.90795 -15.69893 -15.11073 -14.69037 -14.63396 -14.40988 -14.21544 -13.95615 -13.85081 -13.64205 -13.43074 -13.07172 -12.80476 -12.60389 -12.43008 -11.86761 -11.60172 -11.42285 -11.16873 -11.07019 -10.95592 -10.92524 -10.78559 -10.45388 -10.26654 -10.09460 -9.71719 -9.57920 -9.02713 -8.96820 -8.94446 -8.71489 -8.32745 -6.78947 -5.95822 -3.46024 0.84985 1.40016 3.08945 3.27062 3.35736 3.39192 3.65406 4.01412 4.30728 4.34324 4.49679 4.53160 4.72351 4.96119 4.98181 5.07879 5.17692 5.22576 5.39472 5.46200 5.53169 5.56983 5.68562 5.79664 5.81270 5.96552 5.99481 6.03589 6.12231 6.17704 6.29185 6.31108 6.39296 6.45059 6.48903 6.70282 6.85454 7.01233 7.03051 7.44760 7.65884 7.82974 8.10763 8.23852 8.70045 9.00750 9.60772 10.19740 11.10158 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.004227 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.228779 B = 6622.492841 C = 7821.177549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.013 3.987 3 Si 0.891 3.109 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.257 4.257 8 H 0.073 0.927 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.034 3.966 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.042 0.958 16 C 0.135 3.865 17 N -0.687 5.687 18 C 0.549 3.451 19 O -0.558 6.558 20 C -0.113 4.113 21 C -0.079 4.079 22 C -0.105 4.105 23 C -0.123 4.123 24 C 0.107 3.893 25 F -0.211 7.211 26 C -0.111 4.111 27 C -0.067 4.067 28 H 0.256 0.744 29 H 0.093 0.907 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.415 0.585 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -1.605 9.955 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.187 4.187 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.386 4.386 8 H 0.091 0.909 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.011 3.989 17 N -0.338 5.338 18 C 0.336 3.664 19 O -0.439 6.439 20 C -0.116 4.116 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.124 4.124 24 C 0.052 3.948 25 F -0.192 7.192 26 C -0.129 4.129 27 C -0.086 4.086 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.254 0.746 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.146 0.854 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.180 -1.968 9.759 10.798 hybrid contribution 0.073 1.569 -0.134 1.576 sum 4.253 -0.399 9.625 10.530 Atomic orbital electron populations 1.69975 1.05130 1.25737 1.53360 1.25106 0.95271 0.98110 1.00240 0.86453 0.79562 0.83869 0.78113 1.21251 1.21386 1.20050 1.19238 0.91366 0.83290 1.44756 0.90910 1.44099 1.31971 1.02866 1.52799 1.21418 0.88825 0.96868 0.91035 1.23356 0.99157 0.86516 0.95315 1.87802 1.40218 1.36051 1.67001 1.22859 0.86720 0.98671 0.94049 1.21435 0.93607 0.89373 0.93835 0.94065 1.21209 0.97717 0.90261 0.89730 1.45943 1.12212 1.40849 1.34801 1.18181 0.84301 0.82211 0.81717 1.90705 1.27839 1.55842 1.69549 1.20161 0.94614 0.98845 0.97979 1.21532 0.97434 0.94797 0.96029 1.21004 0.98349 0.97375 0.95571 1.20375 0.94565 0.98538 0.98890 1.20821 1.03339 0.77195 0.93460 1.92823 1.96219 1.42160 1.88015 1.20954 0.96775 0.96792 0.98393 1.21243 0.98440 0.95474 0.93424 0.93387 0.88933 0.95238 0.94105 0.90218 0.93456 0.89869 0.92077 0.91263 0.74620 0.84369 0.85192 0.89769 0.89873 0.85396 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.58 11.13 55.49 0.62 -22.97 16 2 C 0.01 0.32 5.06 -17.43 -0.09 0.23 16 3 Si 0.89 20.85 29.57 -169.99 -5.03 15.82 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.24 7.11 -15.06 -0.11 -6.35 16 8 H 0.07 1.83 5.81 -52.49 -0.30 1.52 16 9 N -0.59 -13.29 3.03 -164.31 -0.50 -13.79 16 10 C 0.14 3.20 5.38 -3.53 -0.02 3.18 16 11 C 0.03 0.65 6.99 37.31 0.26 0.91 16 12 O -0.39 -7.48 10.74 -35.23 -0.38 -7.86 16 13 C 0.06 0.97 6.29 37.31 0.23 1.20 16 14 C 0.12 2.37 3.20 -67.42 -0.22 2.16 16 15 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.13 2.46 4.44 -4.04 -0.02 2.44 16 17 N -0.69 -12.85 3.75 -61.25 -0.23 -13.08 16 18 C 0.55 10.43 7.77 -12.33 -0.10 10.34 16 19 O -0.56 -11.83 16.35 5.33 0.09 -11.74 16 20 C -0.11 -1.89 5.87 -104.97 -0.62 -2.50 16 21 C -0.08 -1.23 9.54 -39.19 -0.37 -1.60 16 22 C -0.10 -1.41 9.68 -39.64 -0.38 -1.79 16 23 C -0.12 -1.51 5.60 -104.54 -0.59 -2.09 16 24 C 0.11 1.01 7.67 36.01 0.28 1.29 16 25 F -0.21 -2.71 17.34 2.25 0.04 -2.67 16 26 C -0.11 -1.37 9.68 -39.64 -0.38 -1.75 16 27 C -0.07 -0.98 9.60 -39.18 -0.38 -1.36 16 28 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.09 2.27 6.32 -51.93 -0.33 1.94 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.37 7.53 -51.93 -0.39 0.98 16 37 H 0.41 7.94 5.41 -40.82 -0.22 7.72 16 38 H 0.14 2.19 6.41 -52.49 -0.34 1.86 16 39 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 40 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 41 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 42 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.14 1.94 7.65 -52.49 -0.40 1.54 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -29.58 353.81 -8.31 -37.89 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.76 Total: 8.77 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.49 Total: 4.29 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.11 Total: -49.83 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.29 Total: -19.60 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.58 -8.31 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051263649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.248 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds