Wall clock time and date at job start Tue Mar 31 2020 13:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00339 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99692 * 3 2 1 5 5 H 1.48505 * 109.46881 * 29.99410 * 3 2 1 6 6 H 1.48493 * 109.47349 * 149.99380 * 3 2 1 7 7 C 1.38811 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00485 * 190.84336 * 7 2 1 9 9 N 1.36937 * 120.00144 * 10.83947 * 7 2 1 10 10 C 1.47155 * 120.97930 * 31.03648 * 9 7 2 11 11 C 1.53295 * 108.38684 * 129.48618 * 10 9 7 12 12 O 1.42959 * 109.21880 * 52.29950 * 11 10 9 13 13 C 1.42960 * 114.17084 * 297.41923 * 12 11 10 14 14 C 1.47154 * 120.98867 * 211.05933 * 9 7 2 15 15 H 1.08991 * 109.71284 * 110.76852 * 14 9 7 16 16 C 1.52998 * 109.67604 * 350.23817 * 14 9 7 17 17 N 1.46499 * 109.47456 * 61.31363 * 16 14 9 18 18 C 1.34780 * 120.00066 * 180.02562 * 17 16 14 19 19 O 1.21545 * 120.00096 * 359.97438 * 18 17 16 20 20 C 1.47844 * 119.99911 * 180.02562 * 18 17 16 21 21 C 1.39578 * 120.14666 * 359.71394 * 20 18 17 22 22 C 1.37952 * 119.85358 * 179.75265 * 21 20 18 23 23 C 1.38356 * 120.14528 * 0.52894 * 22 21 20 24 24 C 1.50703 * 119.85389 * 179.76564 * 23 22 21 25 25 F 1.39901 * 109.47266 * 269.97858 * 24 23 22 26 26 C 1.38352 * 120.29290 * 359.74709 * 23 22 21 27 27 C 1.37963 * 120.14610 * 359.97438 * 26 23 22 28 28 H 0.97004 * 119.99839 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.68149 * 9.76580 * 10 9 7 30 30 H 1.08997 * 109.71546 * 249.22710 * 10 9 7 31 31 H 1.09001 * 109.51194 * 292.38141 * 11 10 9 32 32 H 1.08991 * 109.51604 * 172.22787 * 11 10 9 33 33 H 1.08998 * 109.51477 * 302.65740 * 13 12 11 34 34 H 1.09000 * 109.50996 * 182.50732 * 13 12 11 35 35 H 1.09004 * 109.47132 * 181.31337 * 16 14 9 36 36 H 1.08999 * 109.47648 * 301.30914 * 16 14 9 37 37 H 0.97006 * 119.99895 * 359.97438 * 17 16 14 38 38 H 1.08001 * 120.06724 * 0.02562 * 21 20 18 39 39 H 1.08003 * 119.92836 * 180.28029 * 22 21 20 40 40 H 1.09004 * 109.46741 * 29.98236 * 24 23 22 41 41 H 1.08999 * 109.47056 * 149.98020 * 24 23 22 42 42 H 1.08007 * 119.93181 * 180.02562 * 26 23 22 43 43 H 1.07998 * 120.07549 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0757 -1.2105 0.1765 9 7 1.3439 -2.3776 -0.2220 10 6 0.1534 -2.4216 -1.0858 11 6 0.3400 -3.5476 -2.1092 12 8 0.6716 -4.7570 -1.4230 13 6 1.9034 -4.7007 -0.6996 14 6 1.7967 -3.6339 0.3961 15 1 1.0774 -3.9528 1.1503 16 6 3.1658 -3.4241 1.0460 17 7 3.0575 -2.4081 2.0958 18 6 4.1462 -2.0568 2.8086 19 8 5.2177 -2.5833 2.5806 20 6 4.0368 -1.0319 3.8684 21 6 2.8088 -0.4218 4.1295 22 6 2.7125 0.5301 5.1233 23 6 3.8319 0.8884 5.8532 24 6 3.7203 1.9329 6.9338 25 9 3.9599 3.1978 6.3863 26 6 5.0533 0.2917 5.5956 27 6 5.1622 -0.6659 4.6084 28 1 -0.4850 0.8401 -0.0004 29 1 0.0405 -1.4694 -1.6042 30 1 -0.7323 -2.6179 -0.4816 31 1 1.1453 -3.2859 -2.7956 32 1 -0.5848 -3.6881 -2.6686 33 1 2.7143 -4.4433 -1.3808 34 1 2.1031 -5.6710 -0.2448 35 1 3.5085 -4.3623 1.4824 36 1 3.8792 -3.0924 0.2916 37 1 2.2024 -1.9876 2.2775 38 1 1.9351 -0.6976 3.5576 39 1 1.7619 0.9997 5.3294 40 1 2.7185 1.9063 7.3626 41 1 4.4546 1.7293 7.7131 42 1 5.9233 0.5755 6.1692 43 1 6.1160 -1.1312 4.4086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051263649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:12 Heat of formation + Delta-G solvation = -94.693889 kcal Electronic energy + Delta-G solvation = -27789.752355 eV Core-core repulsion = 23749.384132 eV Total energy + Delta-G solvation = -4040.368223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.61527 -41.30875 -40.17445 -39.30541 -36.98406 -35.38858 -33.81402 -33.02589 -32.22366 -31.85607 -29.07286 -28.24489 -26.60639 -25.25565 -23.80379 -23.73286 -22.96534 -21.47350 -21.17026 -19.31046 -18.28279 -17.67312 -17.54714 -17.17556 -16.94648 -16.80005 -16.44268 -16.28980 -16.16865 -15.84901 -15.49667 -15.45320 -15.28193 -15.05717 -14.75197 -14.53291 -14.30932 -13.87614 -13.75529 -13.40581 -13.12981 -12.91773 -12.77755 -12.54146 -12.31212 -12.16686 -12.11741 -12.01094 -11.87927 -11.83531 -11.33146 -11.08493 -10.66578 -10.58584 -10.16529 -10.04720 -9.81703 -8.64699 -7.90241 -5.40662 -0.30352 0.31707 1.36067 1.42937 1.47405 1.78265 2.24009 2.41859 2.77727 3.02592 3.25568 3.40740 3.45093 3.68358 3.80071 3.90738 4.00350 4.11078 4.11979 4.21012 4.31488 4.34354 4.46960 4.53220 4.57043 4.62361 4.65422 4.66476 4.72948 4.80838 4.95254 4.99492 5.09736 5.20014 5.28860 5.30016 5.36652 5.49481 5.62578 5.66686 5.80562 6.28294 6.35474 6.59804 7.08731 7.20150 7.73822 8.29798 9.13695 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014685 B = 0.004227 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.228779 B = 6622.492841 C = 7821.177549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 0.934 3.066 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.065 0.935 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.396 6.396 13 C 0.058 3.942 14 C 0.126 3.874 15 H 0.039 0.961 16 C 0.140 3.860 17 N -0.689 5.689 18 C 0.547 3.453 19 O -0.587 6.587 20 C -0.140 4.140 21 C -0.092 4.092 22 C -0.111 4.111 23 C -0.117 4.117 24 C 0.103 3.897 25 F -0.230 7.230 26 C -0.103 4.103 27 C -0.076 4.076 28 H 0.251 0.749 29 H 0.066 0.934 30 H 0.009 0.991 31 H 0.043 0.957 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.411 0.589 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.163 0.837 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 -1.736 11.403 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.220 4.220 3 Si 0.765 3.235 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.082 0.918 9 N -0.331 5.331 10 C 0.024 3.976 11 C -0.032 4.032 12 O -0.315 6.315 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.057 0.943 16 C 0.016 3.984 17 N -0.339 5.339 18 C 0.335 3.665 19 O -0.470 6.470 20 C -0.143 4.143 21 C -0.111 4.111 22 C -0.129 4.129 23 C -0.118 4.118 24 C 0.049 3.951 25 F -0.211 7.211 26 C -0.121 4.121 27 C -0.095 4.095 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.250 0.750 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.181 0.819 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.861 -2.117 11.205 12.396 hybrid contribution -0.107 1.582 -0.513 1.667 sum 4.754 -0.535 10.692 11.713 Atomic orbital electron populations 1.70069 1.05807 1.25593 1.55169 1.25465 0.95644 0.99719 1.01210 0.85778 0.78320 0.82058 0.77391 1.21798 1.21598 1.20796 1.19209 0.90955 0.84070 1.42881 0.91784 1.44291 1.31823 1.03561 1.53439 1.21251 0.88058 0.97015 0.91310 1.23221 1.00522 0.85257 0.94214 1.87807 1.40982 1.35645 1.67062 1.22983 0.86152 0.99641 0.93300 1.21563 0.93666 0.88382 0.94413 0.94296 1.21189 0.96762 0.91108 0.89377 1.45976 1.12108 1.40967 1.34879 1.18589 0.83718 0.82277 0.81928 1.90670 1.28631 1.57082 1.70617 1.20109 0.95998 0.99566 0.98628 1.21490 0.96637 0.95919 0.97072 1.21294 0.99929 0.96688 0.94941 1.20783 0.93859 0.98394 0.98748 1.21132 1.06128 0.75083 0.92784 1.92788 1.96457 1.43439 1.88413 1.21346 0.98147 0.95258 0.97368 1.21389 0.97779 0.96277 0.94010 0.93928 0.91561 0.97322 0.93898 0.87714 0.93255 0.86318 0.89800 0.93022 0.75013 0.85706 0.83344 0.87331 0.86459 0.81906 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.46 11.13 21.65 0.24 -49.22 16 2 C -0.02 -1.19 5.06 84.86 0.43 -0.76 16 3 Si 0.93 43.68 29.57 68.60 2.03 45.71 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.24 -11.89 7.11 84.03 0.60 -11.29 16 8 H 0.06 3.28 5.81 -2.91 -0.02 3.26 16 9 N -0.61 -27.39 3.03 -673.74 -2.04 -29.43 16 10 C 0.15 6.68 5.38 86.35 0.46 7.15 16 11 C 0.05 1.67 6.99 72.08 0.50 2.17 16 12 O -0.40 -14.31 10.74 -148.98 -1.60 -15.91 16 13 C 0.06 1.88 6.29 72.08 0.45 2.33 16 14 C 0.13 4.72 3.20 44.96 0.14 4.87 16 15 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 16 C 0.14 5.06 4.44 86.38 0.38 5.44 16 17 N -0.69 -26.28 3.75 -465.98 -1.75 -28.03 16 18 C 0.55 21.20 7.77 86.79 0.67 21.88 16 19 O -0.59 -25.27 16.35 -3.86 -0.06 -25.34 16 20 C -0.14 -4.72 5.87 -20.09 -0.12 -4.84 16 21 C -0.09 -2.89 9.54 22.53 0.21 -2.68 16 22 C -0.11 -2.82 9.68 22.23 0.22 -2.61 16 23 C -0.12 -2.55 5.60 -19.81 -0.11 -2.66 16 24 C 0.10 1.56 7.67 71.24 0.55 2.11 16 25 F -0.23 -5.23 17.34 44.97 0.78 -4.45 16 26 C -0.10 -2.29 9.68 22.23 0.22 -2.07 16 27 C -0.08 -2.17 9.60 22.53 0.22 -1.95 16 28 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 29 H 0.07 3.32 6.32 -2.39 -0.02 3.31 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.10 3.29 8.14 -2.39 -0.02 3.28 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 36 H 0.05 2.06 7.53 -2.39 -0.02 2.04 16 37 H 0.41 16.26 5.41 -92.70 -0.50 15.76 16 38 H 0.13 4.14 6.41 -2.91 -0.02 4.13 16 39 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.11 1.16 8.08 -2.39 -0.02 1.14 16 41 H 0.12 1.03 8.08 -2.39 -0.02 1.01 16 42 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.14 3.84 7.65 -2.91 -0.02 3.81 16 Total: -1.00 -64.60 353.81 2.96 -61.64 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.54 Total: 27.94 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 4.83 Total: 17.09 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -3.55 Total: -106.68 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.66 Total: -41.24 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.78 Total: -4.45 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -64.60 2.96 -61.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051263649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.050 kcal (2) G-P(sol) polarization free energy of solvation -64.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds