Wall clock time and date at job start Tue Mar 31 2020 13:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99920 * 2 1 4 4 H 1.09000 * 109.47433 * 5.00413 * 3 2 1 5 5 C 1.52997 * 109.47054 * 125.00353 * 3 2 1 6 6 O 1.42898 * 109.47374 * 55.00096 * 5 3 2 7 7 C 1.42896 * 114.00255 * 180.02562 * 6 5 3 8 8 N 1.46498 * 109.47567 * 245.00203 * 3 2 1 9 9 C 1.34783 * 119.99907 * 84.99691 * 8 3 2 10 10 O 1.21363 * 119.99783 * 0.02562 * 9 8 3 11 11 C 1.49341 * 119.99817 * 180.02562 * 9 8 3 12 12 O 1.21383 * 120.00387 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99739 * 179.72510 * 11 9 8 14 14 C 1.39930 * 120.00380 * 180.27595 * 13 11 9 15 15 C 1.40457 * 125.97563 * 359.71813 * 14 13 11 16 16 C 1.35218 * 107.86757 * 179.82329 * 15 14 13 17 17 N 1.34987 * 107.87279 * 0.43474 * 16 15 14 18 18 C 1.46503 * 125.96903 * 179.72110 * 17 16 15 19 19 C 1.50701 * 109.46572 * 124.97594 * 18 17 16 20 20 H 1.08003 * 120.00253 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99911 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99506 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47281 * 60.00461 * 23 21 19 25 25 H 1.48509 * 109.46911 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47576 * 300.00070 * 23 21 19 27 27 N 1.31268 * 125.98365 * 180.02562 * 14 13 11 28 28 H 1.07997 * 120.00192 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99772 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00192 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47546 * 175.00632 * 5 3 2 32 32 H 1.09005 * 109.47028 * 295.00162 * 5 3 2 33 33 H 1.09002 * 109.47265 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.46963 * 299.99819 * 7 6 5 35 35 H 1.08997 * 109.47570 * 59.99389 * 7 6 5 36 36 H 0.97001 * 120.00384 * 265.00647 * 8 3 2 37 37 H 0.97000 * 120.00317 * 0.28416 * 13 11 9 38 38 H 1.08007 * 126.06574 * 359.96867 * 15 14 13 39 39 H 1.08000 * 126.05874 * 180.15184 * 16 15 14 40 40 H 1.08998 * 109.46981 * 244.97600 * 18 17 16 41 41 H 1.08992 * 109.46957 * 4.98041 * 18 17 16 42 42 H 0.97006 * 119.99843 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1316 0.0896 5 6 3.0350 1.3330 1.1816 6 8 3.8841 0.1849 1.1274 7 6 4.8341 0.1138 2.1925 8 7 2.8131 1.4363 -1.2518 9 6 2.2097 1.9332 -2.3498 10 8 1.0455 2.2725 -2.3012 11 6 2.9738 2.0664 -3.6260 12 8 4.1381 1.7267 -3.6746 13 7 2.3689 2.5582 -4.7253 14 6 3.0830 2.6777 -5.9227 15 6 4.4299 2.3304 -6.1183 16 6 4.7425 2.5908 -7.4078 17 7 3.6424 3.0932 -8.0074 18 6 3.5423 3.5165 -9.4064 19 6 2.4016 2.7895 -10.0707 20 1 1.8106 2.0826 -9.5073 21 6 2.1124 3.0269 -11.3978 22 7 2.8325 3.8873 -12.0839 23 14 0.6990 2.1253 -12.2214 24 1 -0.5686 2.4424 -11.5159 25 1 0.5967 2.5553 -13.6392 26 1 0.9447 0.6619 -12.1640 27 7 2.6132 3.1392 -7.0583 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.6423 2.2368 1.1314 32 1 2.4722 1.3249 2.1150 33 1 5.4402 -0.7851 2.0793 34 1 5.4788 0.9922 2.1636 35 1 4.3084 0.0803 3.1467 36 1 3.7437 1.1653 -1.2905 37 1 1.4384 2.8295 -4.6866 38 1 5.0968 1.9248 -5.3718 39 1 5.7033 2.4301 -7.8740 40 1 3.3626 4.5907 -9.4490 41 1 4.4726 3.2829 -9.9240 42 1 2.6293 4.0541 -13.0177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116646014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:36 Heat of formation + Delta-G solvation = -2.065326 kcal Electronic energy + Delta-G solvation = -26008.664622 eV Core-core repulsion = 21992.233037 eV Total energy + Delta-G solvation = -4016.431585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10005 -40.28427 -38.96984 -38.17918 -36.09249 -34.91565 -33.38390 -32.96209 -31.03079 -29.79634 -29.40384 -27.13705 -26.66795 -25.27589 -23.36291 -22.69867 -21.34710 -20.43958 -20.27174 -19.66204 -18.32016 -17.35488 -16.73408 -16.60353 -16.53703 -16.22453 -16.04105 -15.64685 -15.64214 -15.17136 -14.57144 -14.36657 -14.17195 -13.88868 -13.69574 -13.33100 -12.94768 -12.80024 -12.40304 -12.28155 -12.04692 -11.95569 -11.88255 -11.56337 -11.51461 -11.06563 -10.85222 -10.54165 -10.26474 -10.22940 -10.05190 -9.87932 -9.55892 -9.53510 -9.48920 -8.63645 -8.21896 -7.57033 -6.25147 -4.30316 1.21412 1.76003 2.25404 2.67446 3.04288 3.20850 3.26459 3.28407 3.29558 3.35249 3.67933 3.89064 4.30308 4.31610 4.41360 4.45615 4.74577 4.87947 4.90562 4.94368 5.04055 5.10137 5.23786 5.33027 5.43907 5.63818 5.72468 5.90007 6.11599 6.31855 6.33186 6.40398 6.43543 6.61293 6.80210 6.93654 7.02880 7.25766 7.38590 7.63853 7.69876 7.85739 7.97124 7.98743 8.55090 8.77999 9.35423 10.83595 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023372 B = 0.002224 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.719868 B =12588.449410 C =13370.531102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.172 4.172 3 C 0.177 3.823 4 H 0.109 0.891 5 C 0.055 3.945 6 O -0.386 6.386 7 C 0.031 3.969 8 N -0.690 5.690 9 C 0.518 3.482 10 O -0.514 6.514 11 C 0.513 3.487 12 O -0.498 6.498 13 N -0.598 5.598 14 C 0.251 3.749 15 C -0.286 4.286 16 C 0.053 3.947 17 N -0.315 5.315 18 C 0.257 3.743 19 C -0.530 4.530 20 H 0.069 0.931 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.909 3.091 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.295 5.295 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.419 0.581 37 H 0.423 0.577 38 H 0.161 0.839 39 H 0.170 0.830 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 -5.544 28.071 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.191 4.191 3 C 0.073 3.927 4 H 0.126 0.874 5 C -0.022 4.022 6 O -0.305 6.305 7 C -0.065 4.065 8 N -0.344 5.344 9 C 0.298 3.702 10 O -0.389 6.389 11 C 0.292 3.708 12 O -0.371 6.371 13 N -0.247 5.247 14 C -0.002 4.002 15 C -0.317 4.317 16 C -0.097 4.097 17 N -0.097 5.097 18 C 0.140 3.860 19 C -0.569 4.569 20 H 0.087 0.913 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.736 3.264 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 N -0.126 5.126 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.256 0.744 37 H 0.260 0.740 38 H 0.178 0.822 39 H 0.188 0.812 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.595 -5.060 27.025 27.540 hybrid contribution -0.015 -0.607 0.012 0.607 sum 1.581 -5.667 27.037 27.670 Atomic orbital electron populations 1.23977 0.95827 1.02297 0.97857 1.23071 0.95885 0.98268 1.01868 1.20295 0.92858 0.97483 0.82017 0.87368 1.22825 0.92559 0.89200 0.97617 1.87906 1.49071 1.44193 1.49283 1.22774 0.91767 1.02345 0.89638 1.45721 1.16482 1.63062 1.09156 1.19916 0.86942 0.78566 0.84755 1.90781 1.15907 1.47872 1.84371 1.19903 0.87142 0.79341 0.84384 1.90712 1.15854 1.46541 1.84021 1.41994 1.15642 1.60589 1.06455 1.19013 0.91800 1.03014 0.86374 1.21520 0.95467 1.17276 0.97426 1.22581 0.93852 0.99783 0.93460 1.49169 1.05229 1.44794 1.10482 1.19790 0.99641 0.97000 0.69548 1.21213 1.14992 1.25089 0.95579 0.91306 1.24944 0.97002 0.95215 0.96887 1.69907 1.39588 1.33991 1.09821 0.86371 0.82131 0.79901 0.78020 1.19886 1.21041 1.20022 1.77407 1.12919 1.26083 0.96187 0.88129 0.88120 0.86361 0.91972 0.91232 0.89345 0.93837 0.93971 0.74414 0.73968 0.82154 0.81236 0.93555 0.92381 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 14.32 29.01 0.42 -0.91 16 2 C -0.17 -1.47 8.67 -36.03 -0.31 -1.78 16 3 C 0.18 1.43 2.73 -69.09 -0.19 1.24 16 4 H 0.11 0.87 7.23 -51.93 -0.38 0.49 16 5 C 0.06 0.33 5.67 37.16 0.21 0.54 16 6 O -0.39 -2.79 9.78 -35.23 -0.34 -3.13 16 7 C 0.03 0.15 11.01 101.05 1.11 1.26 16 8 N -0.69 -6.84 5.04 -55.40 -0.28 -7.12 16 9 C 0.52 6.56 7.84 -11.63 -0.09 6.47 16 10 O -0.51 -7.29 16.14 5.49 0.09 -7.20 16 11 C 0.51 7.65 7.85 -11.64 -0.09 7.56 16 12 O -0.50 -8.04 13.60 5.47 0.07 -7.96 16 13 N -0.60 -9.93 5.43 -11.58 -0.06 -9.99 16 14 C 0.25 5.05 8.10 -154.56 -1.25 3.80 16 15 C -0.29 -5.50 9.60 -39.82 -0.38 -5.88 16 16 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 17 N -0.31 -7.24 3.67 -62.56 -0.23 -7.47 16 18 C 0.26 6.49 6.26 -5.19 -0.03 6.45 16 19 C -0.53 -14.73 9.24 -34.44 -0.32 -15.05 16 20 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 23 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 N -0.29 -6.82 12.42 31.41 0.39 -6.43 16 28 H 0.10 0.82 7.84 -52.49 -0.41 0.41 16 29 H 0.10 0.72 8.06 -52.48 -0.42 0.29 16 30 H 0.12 1.04 7.86 -52.49 -0.41 0.63 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.42 3.95 7.85 -40.82 -0.32 3.63 16 37 H 0.42 6.43 8.29 -40.82 -0.34 6.09 16 38 H 0.16 2.90 5.91 -52.48 -0.31 2.59 16 39 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -32.31 372.56 -5.77 -38.08 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.51 Total: 7.51 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.22 Total: 6.17 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.56 Total: -55.51 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.18 Total: -18.30 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.31 -5.77 -38.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116646014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.018 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds