Wall clock time and date at job start Tue Mar 31 2020 13:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99920 * 2 1 4 4 H 1.09000 * 109.47433 * 5.00413 * 3 2 1 5 5 C 1.52997 * 109.47054 * 125.00353 * 3 2 1 6 6 O 1.42898 * 109.47374 * 55.00096 * 5 3 2 7 7 C 1.42896 * 114.00255 * 180.02562 * 6 5 3 8 8 N 1.46498 * 109.47567 * 245.00203 * 3 2 1 9 9 C 1.34783 * 119.99907 * 84.99691 * 8 3 2 10 10 O 1.21363 * 119.99783 * 0.02562 * 9 8 3 11 11 C 1.49341 * 119.99817 * 180.02562 * 9 8 3 12 12 O 1.21383 * 120.00387 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99739 * 179.72510 * 11 9 8 14 14 C 1.39930 * 120.00380 * 180.27595 * 13 11 9 15 15 C 1.40457 * 125.97563 * 359.71813 * 14 13 11 16 16 C 1.35218 * 107.86757 * 179.82329 * 15 14 13 17 17 N 1.34987 * 107.87279 * 0.43474 * 16 15 14 18 18 C 1.46503 * 125.96903 * 179.72110 * 17 16 15 19 19 C 1.50701 * 109.46572 * 124.97594 * 18 17 16 20 20 H 1.08003 * 120.00253 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99911 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99506 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47281 * 60.00461 * 23 21 19 25 25 H 1.48509 * 109.46911 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47576 * 300.00070 * 23 21 19 27 27 N 1.31268 * 125.98365 * 180.02562 * 14 13 11 28 28 H 1.07997 * 120.00192 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99772 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00192 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47546 * 175.00632 * 5 3 2 32 32 H 1.09005 * 109.47028 * 295.00162 * 5 3 2 33 33 H 1.09002 * 109.47265 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.46963 * 299.99819 * 7 6 5 35 35 H 1.08997 * 109.47570 * 59.99389 * 7 6 5 36 36 H 0.97001 * 120.00384 * 265.00647 * 8 3 2 37 37 H 0.97000 * 120.00317 * 0.28416 * 13 11 9 38 38 H 1.08007 * 126.06574 * 359.96867 * 15 14 13 39 39 H 1.08000 * 126.05874 * 180.15184 * 16 15 14 40 40 H 1.08998 * 109.46981 * 244.97600 * 18 17 16 41 41 H 1.08992 * 109.46957 * 4.98041 * 18 17 16 42 42 H 0.97006 * 119.99843 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1316 0.0896 5 6 3.0350 1.3330 1.1816 6 8 3.8841 0.1849 1.1274 7 6 4.8341 0.1138 2.1925 8 7 2.8131 1.4363 -1.2518 9 6 2.2097 1.9332 -2.3498 10 8 1.0455 2.2725 -2.3012 11 6 2.9738 2.0664 -3.6260 12 8 4.1381 1.7267 -3.6746 13 7 2.3689 2.5582 -4.7253 14 6 3.0830 2.6777 -5.9227 15 6 4.4299 2.3304 -6.1183 16 6 4.7425 2.5908 -7.4078 17 7 3.6424 3.0932 -8.0074 18 6 3.5423 3.5165 -9.4064 19 6 2.4016 2.7895 -10.0707 20 1 1.8106 2.0826 -9.5073 21 6 2.1124 3.0269 -11.3978 22 7 2.8325 3.8873 -12.0839 23 14 0.6990 2.1253 -12.2214 24 1 -0.5686 2.4424 -11.5159 25 1 0.5967 2.5553 -13.6392 26 1 0.9447 0.6619 -12.1640 27 7 2.6132 3.1392 -7.0583 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.6423 2.2368 1.1314 32 1 2.4722 1.3249 2.1150 33 1 5.4402 -0.7851 2.0793 34 1 5.4788 0.9922 2.1636 35 1 4.3084 0.0803 3.1467 36 1 3.7437 1.1653 -1.2905 37 1 1.4384 2.8295 -4.6866 38 1 5.0968 1.9248 -5.3718 39 1 5.7033 2.4301 -7.8740 40 1 3.3626 4.5907 -9.4490 41 1 4.4726 3.2829 -9.9240 42 1 2.6293 4.0541 -13.0177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116646014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:36 Heat of formation + Delta-G solvation = -25.224668 kcal Electronic energy + Delta-G solvation = -26009.668887 eV Core-core repulsion = 21992.233037 eV Total energy + Delta-G solvation = -4017.435850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.45412 -41.57629 -39.97381 -38.94540 -36.93609 -36.26192 -35.29938 -33.78261 -32.83349 -31.01945 -30.40400 -28.81904 -27.31103 -26.42812 -24.79259 -23.79292 -22.64762 -21.85955 -21.14036 -20.87749 -19.48141 -18.70673 -18.33564 -17.95505 -17.34630 -17.19494 -16.96065 -16.89545 -16.32992 -16.26482 -16.16410 -15.78166 -15.40887 -15.12627 -14.59756 -14.37097 -14.23461 -14.09500 -13.87174 -13.70660 -13.22756 -13.02546 -12.79813 -12.65477 -12.58010 -12.42602 -12.30326 -12.14739 -12.10264 -11.65831 -11.44236 -10.91918 -10.72286 -10.59843 -10.44038 -10.35142 -9.83409 -9.21676 -8.33669 -6.47140 0.04851 0.78765 1.12947 1.32886 1.38390 1.40398 1.49054 1.74945 1.90979 2.26287 2.34436 2.62813 2.82409 2.98618 3.27098 3.73530 3.89997 3.91665 4.20181 4.22377 4.44003 4.48497 4.60210 4.63527 4.64715 4.68522 4.84165 4.88679 4.95174 4.95577 5.00413 5.03052 5.10038 5.55851 5.68679 5.70688 5.77616 5.78623 5.88142 6.15677 6.21498 6.25636 6.56266 6.63858 6.78678 6.96649 7.22559 8.73941 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023372 B = 0.002224 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.719868 B =12588.449410 C =13370.531102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.179 4.179 3 C 0.173 3.827 4 H 0.111 0.889 5 C 0.059 3.941 6 O -0.407 6.407 7 C 0.027 3.973 8 N -0.674 5.674 9 C 0.526 3.474 10 O -0.530 6.530 11 C 0.516 3.484 12 O -0.507 6.507 13 N -0.600 5.600 14 C 0.258 3.742 15 C -0.288 4.288 16 C 0.061 3.939 17 N -0.340 5.340 18 C 0.271 3.729 19 C -0.549 4.549 20 H 0.051 0.949 21 C 0.019 3.981 22 N -0.919 5.919 23 Si 0.970 3.030 24 H -0.275 1.275 25 H -0.273 1.273 26 H -0.269 1.269 27 N -0.341 5.341 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.422 0.578 37 H 0.428 0.572 38 H 0.176 0.824 39 H 0.207 0.793 40 H 0.023 0.977 41 H 0.063 0.937 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 -6.470 29.557 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C 0.070 3.930 4 H 0.128 0.872 5 C -0.018 4.018 6 O -0.327 6.327 7 C -0.069 4.069 8 N -0.327 5.327 9 C 0.305 3.695 10 O -0.407 6.407 11 C 0.297 3.703 12 O -0.380 6.380 13 N -0.250 5.250 14 C 0.004 3.996 15 C -0.319 4.319 16 C -0.088 4.088 17 N -0.122 5.122 18 C 0.153 3.847 19 C -0.587 4.587 20 H 0.070 0.930 21 C -0.181 4.181 22 N -0.557 5.557 23 Si 0.794 3.206 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.194 1.194 27 N -0.172 5.172 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.260 0.740 37 H 0.266 0.734 38 H 0.193 0.807 39 H 0.224 0.776 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.850 -6.001 28.566 29.248 hybrid contribution -0.030 -0.359 -0.276 0.454 sum 1.820 -6.360 28.291 29.054 Atomic orbital electron populations 1.24111 0.95858 1.02793 0.97193 1.23084 0.96030 0.98279 1.02458 1.20515 0.93413 0.97392 0.81649 0.87156 1.22840 0.92441 0.89328 0.97203 1.87869 1.49702 1.44690 1.50417 1.22907 0.91626 1.02898 0.89507 1.45759 1.16647 1.61373 1.08953 1.19452 0.86472 0.79117 0.84421 1.90785 1.16381 1.49111 1.84416 1.20377 0.87102 0.78165 0.84641 1.90689 1.16421 1.46650 1.84284 1.42112 1.15892 1.61111 1.05861 1.19330 0.92418 1.01182 0.86663 1.21754 0.95248 1.17213 0.97666 1.23248 0.94227 0.97837 0.93477 1.48917 1.06434 1.46866 1.09962 1.19387 0.98979 0.95347 0.71005 1.21369 1.15911 1.25334 0.96130 0.93025 1.25716 0.99261 0.95850 0.97310 1.69980 1.40755 1.34750 1.10241 0.85428 0.78870 0.78893 0.77414 1.20047 1.19737 1.19441 1.77320 1.14129 1.28441 0.97330 0.88146 0.87212 0.86692 0.90959 0.89335 0.88991 0.93151 0.92840 0.73979 0.73376 0.80708 0.77604 0.95897 0.91906 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 14.32 67.78 0.97 -1.45 16 2 C -0.18 -2.80 8.67 25.65 0.22 -2.58 16 3 C 0.17 2.49 2.73 44.24 0.12 2.61 16 4 H 0.11 1.58 7.23 -2.39 -0.02 1.57 16 5 C 0.06 0.57 5.67 71.98 0.41 0.98 16 6 O -0.41 -5.12 9.78 -148.98 -1.46 -6.57 16 7 C 0.03 0.20 11.01 113.37 1.25 1.45 16 8 N -0.67 -12.32 5.04 -447.54 -2.26 -14.57 16 9 C 0.53 12.70 7.84 87.23 0.68 13.39 16 10 O -0.53 -14.51 16.14 -3.29 -0.05 -14.56 16 11 C 0.52 14.90 7.85 87.24 0.69 15.58 16 12 O -0.51 -15.64 13.60 -3.35 -0.05 -15.68 16 13 N -0.60 -19.70 5.43 -308.90 -1.68 -21.38 16 14 C 0.26 10.36 8.10 133.40 1.08 11.45 16 15 C -0.29 -10.78 9.60 22.11 0.21 -10.56 16 16 C 0.06 2.30 11.43 83.51 0.95 3.26 16 17 N -0.34 -15.79 3.67 -351.85 -1.29 -17.08 16 18 C 0.27 13.97 6.26 85.63 0.54 14.50 16 19 C -0.55 -31.03 9.24 25.60 0.24 -30.79 16 20 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 21 C 0.02 1.07 5.46 84.66 0.46 1.53 16 22 N -0.92 -51.96 13.29 21.45 0.28 -51.68 16 23 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 N -0.34 -16.05 12.42 -54.54 -0.68 -16.72 16 28 H 0.10 1.51 7.84 -2.91 -0.02 1.49 16 29 H 0.11 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.12 1.88 7.86 -2.91 -0.02 1.86 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.42 7.26 7.85 -92.71 -0.73 6.53 16 37 H 0.43 13.04 8.29 -92.71 -0.77 12.27 16 38 H 0.18 6.01 5.91 -2.91 -0.02 5.99 16 39 H 0.21 5.98 8.06 -2.91 -0.02 5.95 16 40 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 3.12 8.07 -2.39 -0.02 3.10 16 42 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -68.86 372.56 2.24 -66.62 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: -0.43 Total: 26.37 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 7.82 Total: 19.35 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -5.62 Total: -121.44 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.56 Total: -36.82 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.86 2.24 -66.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116646014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.391 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds