Wall clock time and date at job start Tue Mar 31 2020 12:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46828 * 2 1 4 4 C 1.34778 * 119.99534 * 180.02562 * 3 2 1 5 5 O 1.21580 * 120.00550 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99468 * 179.97438 * 4 3 2 7 7 C 1.46507 * 119.99620 * 179.97438 * 6 4 3 8 8 N 1.40099 * 120.00471 * 359.97438 * 6 4 3 9 9 C 1.34775 * 120.00252 * 104.99730 * 8 6 4 10 10 O 1.21591 * 120.00469 * 179.97438 * 9 8 6 11 11 N 1.34784 * 120.00033 * 0.02562 * 9 8 6 12 12 C 1.40024 * 120.00123 * 175.46712 * 11 9 8 13 13 C 1.38910 * 119.99552 * 215.12984 * 12 11 9 14 14 C 1.38014 * 119.99393 * 180.02562 * 13 12 11 15 15 C 1.38903 * 120.00098 * 0.02562 * 14 13 12 16 16 O 1.35790 * 119.99775 * 179.97438 * 15 14 13 17 17 C 1.34814 * 116.99685 * 5.35995 * 16 15 14 18 18 H 1.07999 * 120.00600 * 354.95862 * 17 16 15 19 19 C 1.38626 * 119.99669 * 174.95897 * 17 16 15 20 20 N 1.31576 * 119.99988 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00301 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46945 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47428 * 119.99685 * 21 19 17 24 24 H 1.48499 * 109.47246 * 240.00252 * 21 19 17 25 25 C 1.38898 * 120.00109 * 0.25168 * 15 14 13 26 26 C 1.38006 * 120.00235 * 359.44972 * 25 15 14 27 27 H 1.09002 * 109.47246 * 300.00425 * 1 2 3 28 28 H 1.09000 * 109.47005 * 60.00322 * 1 2 3 29 29 H 1.09003 * 109.46777 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47551 * 239.99455 * 2 1 3 31 31 H 1.09001 * 109.46740 * 119.98946 * 2 1 3 32 32 H 0.96999 * 120.00091 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46841 * 269.99604 * 7 6 4 34 34 H 1.08999 * 109.47270 * 29.99978 * 7 6 4 35 35 H 1.09001 * 109.47011 * 150.00422 * 7 6 4 36 36 H 0.97000 * 119.99790 * 284.99849 * 8 6 4 37 37 H 0.97006 * 119.99684 * 355.46762 * 11 9 8 38 38 H 1.07997 * 120.00681 * 359.97438 * 13 12 11 39 39 H 1.08003 * 120.00013 * 179.97438 * 14 13 12 40 40 H 0.97007 * 119.99669 * 180.02562 * 20 19 17 41 41 H 1.08001 * 119.99979 * 179.72589 * 25 15 14 42 42 H 1.08000 * 120.00403 * 180.25973 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1335 0.7035 -0.0005 6 7 3.7926 2.8982 -0.0010 7 6 5.2330 3.1659 -0.0010 8 7 2.8822 3.9631 -0.0016 9 6 2.6738 4.6721 1.1255 10 8 1.8840 5.5966 1.1249 11 7 3.3415 4.3570 2.2531 12 6 3.1971 5.1510 3.3974 13 6 4.2788 5.3497 4.2459 14 6 4.1363 6.1318 5.3740 15 6 2.9111 6.7198 5.6612 16 8 2.7707 7.4889 6.7715 17 6 3.8839 7.7327 7.4918 18 1 4.8156 7.2566 7.2239 19 6 3.8327 8.5945 8.5764 20 7 2.6976 9.1741 8.9031 21 14 5.3753 8.9330 9.5741 22 1 6.5112 8.1635 9.0057 23 1 5.6869 10.3841 9.5269 24 1 5.1540 8.5197 10.9832 25 6 1.8279 6.5164 4.8158 26 6 1.9720 5.7393 3.6844 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.3880 2.1185 -0.0004 33 1 5.5901 3.2329 1.0267 34 1 5.7529 2.3571 -0.5145 35 1 5.4276 4.1072 -0.5152 36 1 2.4019 4.1901 -0.8132 37 1 3.9222 3.5802 2.2718 38 1 5.2311 4.8916 4.0232 39 1 4.9772 6.2861 6.0340 40 1 2.6619 9.7775 9.6619 41 1 0.8741 6.9699 5.0415 42 1 1.1309 5.5846 3.0249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116736742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:23 Heat of formation + Delta-G solvation = -7.239043 kcal Electronic energy + Delta-G solvation = -26688.058636 eV Core-core repulsion = 22671.402701 eV Total energy + Delta-G solvation = -4016.655935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09352 -39.95489 -38.78261 -36.89292 -36.36626 -35.69495 -33.92642 -32.20782 -31.63186 -30.98117 -30.24226 -27.89825 -26.81507 -25.36345 -23.26314 -22.59102 -22.14404 -21.36938 -20.35168 -19.45392 -18.65409 -17.97209 -17.29505 -17.01724 -16.17112 -16.07188 -15.61843 -15.30275 -14.87808 -14.69745 -14.63717 -14.57328 -14.22473 -13.59807 -13.53308 -13.42224 -12.96226 -12.85564 -12.63669 -12.57599 -12.23045 -11.90539 -11.88844 -11.60840 -11.58798 -11.07931 -11.00524 -10.78872 -10.51168 -10.38692 -9.90560 -9.73540 -9.61347 -9.28943 -9.15541 -8.73231 -8.23283 -6.96778 -6.45713 -4.03841 1.42833 2.11180 2.19620 2.61637 2.67704 3.01993 3.12876 3.14262 3.18845 3.39058 3.95994 4.44553 4.55110 4.64438 4.71555 4.95954 4.97002 5.08423 5.09447 5.31400 5.36646 5.42458 5.52462 5.52984 5.64647 5.74781 5.94953 6.05237 6.08268 6.17518 6.20146 6.46475 6.51921 6.79320 6.83432 6.97865 7.13263 7.20552 7.35627 7.45136 7.75083 7.88966 7.98761 8.10757 8.42718 8.99774 9.69779 10.72250 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.002462 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.077278 B =11370.524351 C =11720.666747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 N -0.739 5.739 4 C 0.713 3.287 5 O -0.574 6.574 6 N -0.437 5.437 7 C 0.099 3.901 8 N -0.538 5.538 9 C 0.707 3.293 10 O -0.558 6.558 11 N -0.663 5.663 12 C 0.045 3.955 13 C -0.088 4.088 14 C -0.219 4.219 15 C 0.148 3.852 16 O -0.176 6.176 17 C -0.391 4.391 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.178 4.178 26 C -0.066 4.066 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.401 0.599 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.426 0.574 37 H 0.400 0.600 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.270 0.730 41 H 0.121 0.879 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -15.165 -18.620 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.007 3.993 3 N -0.395 5.395 4 C 0.414 3.586 5 O -0.448 6.448 6 N -0.271 5.271 7 C -0.044 4.044 8 N -0.298 5.298 9 C 0.407 3.593 10 O -0.431 6.431 11 N -0.311 5.311 12 C -0.047 4.047 13 C -0.108 4.108 14 C -0.239 4.239 15 C 0.094 3.906 16 O -0.079 6.079 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.198 4.198 26 C -0.087 4.087 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.271 0.729 37 H 0.236 0.764 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.139 0.861 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.330 -14.961 -18.177 23.545 hybrid contribution 0.709 0.292 0.075 0.770 sum 1.038 -14.669 -18.102 23.322 Atomic orbital electron populations 1.22025 0.94180 1.03408 1.02825 1.21233 0.94198 0.81332 1.02530 1.45233 1.05333 1.09707 1.79276 1.15886 0.83262 0.81623 0.77869 1.90986 1.55082 1.40679 1.58064 1.46543 1.02670 0.97514 1.80350 1.21946 0.76268 1.03328 1.02840 1.44751 1.43028 1.29058 1.12921 1.16076 0.81667 0.81605 0.79961 1.91042 1.38683 1.30611 1.82722 1.42342 1.48952 1.30365 1.09436 1.17055 0.94904 1.03357 0.89421 1.20448 0.95893 0.99189 0.95304 1.20964 0.98863 1.03970 1.00071 1.19419 0.93052 0.90788 0.87366 1.83995 1.34930 1.58694 1.30317 1.21363 0.87799 1.27775 1.09813 0.88997 1.25294 0.98709 0.95535 0.97034 1.70060 1.24995 1.27739 1.26841 0.85645 0.79900 0.78614 0.79241 1.19108 1.20145 1.20160 1.20142 0.98498 1.05516 0.95641 1.20729 0.95774 0.96644 0.95507 0.91710 0.91926 0.90479 0.91411 0.91323 0.76418 0.92124 0.88809 0.90206 0.72931 0.76412 0.87236 0.85033 0.92052 0.86068 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.03 37.16 0.37 -0.45 16 2 C 0.13 0.93 6.39 -4.04 -0.03 0.91 16 3 N -0.74 -6.13 5.52 -65.22 -0.36 -6.49 16 4 C 0.71 7.45 8.40 -86.92 -0.73 6.72 16 5 O -0.57 -7.74 15.92 5.30 0.08 -7.66 16 6 N -0.44 -3.88 2.68 -72.06 -0.19 -4.07 16 7 C 0.10 0.74 10.23 59.85 0.61 1.35 16 8 N -0.54 -4.86 4.83 27.64 0.13 -4.73 16 9 C 0.71 9.36 8.43 -86.91 -0.73 8.63 16 10 O -0.56 -9.42 14.62 5.29 0.08 -9.35 16 11 N -0.66 -9.11 5.23 -14.18 -0.07 -9.19 16 12 C 0.05 0.79 6.30 -83.62 -0.53 0.27 16 13 C -0.09 -1.56 9.96 -39.41 -0.39 -1.95 16 14 C -0.22 -4.63 9.16 -39.42 -0.36 -4.99 16 15 C 0.15 3.55 6.65 -39.09 -0.26 3.29 16 16 O -0.18 -4.99 9.76 -0.03 0.00 -4.99 16 17 C -0.39 -10.81 9.48 30.88 0.29 -10.52 16 18 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.17 13.67 55.48 0.76 -24.42 16 21 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 C -0.18 -3.85 9.98 -39.42 -0.39 -4.25 16 26 C -0.07 -1.28 8.69 -39.42 -0.34 -1.62 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.40 2.91 7.51 -40.82 -0.31 2.61 16 33 H 0.06 0.45 7.32 -51.93 -0.38 0.07 16 34 H 0.09 0.69 7.42 -51.93 -0.39 0.31 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.43 3.01 8.93 -182.60 -1.63 1.38 16 37 H 0.40 4.76 6.76 -40.82 -0.28 4.49 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.76 5.63 -52.48 -0.30 2.47 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 42 H 0.13 2.41 6.23 -52.49 -0.33 2.09 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -34.11 360.56 -8.14 -42.24 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.39 Total: 9.56 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.58 Total: -1.66 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.27 Total: -48.89 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.16 Total: -22.00 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.11 -8.14 -42.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116736742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.004 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds