Wall clock time and date at job start Tue Mar 31 2020 13:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00013 * 2 1 4 4 C 1.53003 * 109.47109 * 179.97438 * 3 2 1 5 5 N 1.46494 * 115.55021 * 304.30845 * 4 3 2 6 6 C 1.34776 * 119.99843 * 294.57091 * 5 4 3 7 7 O 1.21358 * 120.00398 * 354.93543 * 6 5 4 8 8 C 1.49343 * 119.99852 * 174.93923 * 6 5 4 9 9 O 1.21387 * 119.99733 * 359.97438 * 8 6 5 10 10 N 1.34775 * 120.00259 * 179.97438 * 8 6 5 11 11 C 1.39925 * 120.00352 * 179.97438 * 10 8 6 12 12 C 1.40460 * 125.98157 * 0.02562 * 11 10 8 13 13 C 1.35210 * 107.87007 * 179.97438 * 12 11 10 14 14 N 1.34986 * 107.87472 * 0.22546 * 13 12 11 15 15 C 1.46502 * 125.96989 * 179.73677 * 14 13 12 16 16 C 1.50692 * 109.47380 * 125.00046 * 15 14 13 17 17 H 1.08002 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00499 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99630 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00499 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46870 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47397 * 119.99552 * 20 18 16 23 23 H 1.48500 * 109.46859 * 239.99849 * 20 18 16 24 24 N 1.31273 * 125.98395 * 179.97438 * 11 10 8 25 25 C 1.53002 * 117.49502 * 89.98250 * 4 3 2 26 26 C 1.53002 * 117.49391 * 158.63766 * 4 3 2 27 27 H 1.08994 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47343 * 300.00517 * 1 2 3 29 29 H 1.09007 * 109.47017 * 59.99963 * 1 2 3 30 30 H 1.08996 * 109.47411 * 59.99801 * 3 2 1 31 31 H 1.09008 * 109.46654 * 299.99664 * 3 2 1 32 32 H 0.97000 * 119.99938 * 114.56596 * 5 4 3 33 33 H 0.96999 * 119.99752 * 0.02562 * 10 8 6 34 34 H 1.08003 * 126.06454 * 359.95667 * 12 11 10 35 35 H 1.08003 * 126.06343 * 179.97438 * 13 12 11 36 36 H 1.09009 * 109.47064 * 244.99930 * 15 14 13 37 37 H 1.09002 * 109.47287 * 4.99672 * 15 14 13 38 38 H 0.96999 * 119.99680 * 180.02562 * 19 18 16 39 39 H 1.09009 * 117.49222 * 214.99993 * 25 4 3 40 40 H 1.08998 * 117.50514 * 0.02562 * 25 4 3 41 41 H 1.08998 * 117.50517 * 359.97438 * 26 4 3 42 42 H 1.09005 * 117.49273 * 144.97698 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1061 0.3923 1.0928 6 6 3.9916 0.8191 2.3660 7 8 3.4980 1.9026 2.6009 8 6 4.4724 -0.0414 3.4880 9 8 4.9658 -1.1253 3.2531 10 7 4.3584 0.3855 4.7613 11 6 4.8084 -0.4210 5.8125 12 6 5.3962 -1.6903 5.6856 13 6 5.6907 -2.1372 6.9273 14 7 5.3017 -1.1933 7.8104 15 6 5.4304 -1.2731 9.2676 16 6 6.1837 -0.0694 9.7720 17 1 6.5322 0.6799 9.0767 18 6 6.4290 0.0749 11.1211 19 7 6.0050 -0.8379 11.9678 20 14 7.3622 1.5673 11.7465 21 1 7.7263 2.4392 10.6008 22 1 6.5059 2.3256 12.6936 23 1 8.5969 1.1234 12.4420 24 7 4.7559 -0.1233 7.0900 25 6 4.2402 1.1282 -1.3563 26 6 4.3396 2.3888 -0.4936 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 4.5662 -0.4394 0.8995 33 1 3.9638 1.2514 4.9489 34 1 5.5800 -2.2162 4.7603 35 1 6.1514 -3.0835 7.1698 36 1 4.4385 -1.2965 9.7192 37 1 5.9729 -2.1798 9.5354 38 1 6.1773 -0.7362 12.9169 39 1 5.1284 0.5015 -1.4363 40 1 3.6173 1.1776 -2.2494 41 1 3.7822 3.2669 -0.8197 42 1 5.2931 2.5916 -0.0059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116793875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:22 Heat of formation + Delta-G solvation = 6.585083 kcal Electronic energy + Delta-G solvation = -26273.963447 eV Core-core repulsion = 22257.906972 eV Total energy + Delta-G solvation = -4016.056475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13092 -40.36563 -39.15349 -38.02733 -37.04723 -35.06236 -33.42519 -33.03135 -31.03536 -29.40914 -28.60265 -27.07694 -25.98337 -25.38274 -23.13166 -22.89365 -21.76965 -20.59678 -20.03704 -19.68133 -18.33460 -17.33477 -16.65456 -16.59381 -16.43255 -16.38276 -16.12146 -15.70071 -15.30026 -15.17153 -14.53286 -14.47216 -14.16866 -14.10461 -13.59940 -12.96137 -12.85112 -12.72605 -12.41141 -12.30079 -12.02064 -11.89922 -11.86982 -11.59746 -11.32659 -11.07252 -10.87098 -10.70543 -10.53399 -10.27996 -10.08139 -9.96022 -9.53689 -9.50765 -9.48526 -8.65344 -8.22395 -7.57519 -6.26128 -4.31132 1.21058 1.99285 2.66828 2.95959 3.04815 3.13829 3.22176 3.29843 3.36963 3.50856 3.67427 3.82244 4.22293 4.29583 4.37374 4.40933 4.54635 4.86511 4.96892 5.03147 5.09343 5.12239 5.16671 5.30402 5.36104 5.43373 5.43554 5.61924 5.71919 6.02150 6.11085 6.33039 6.41977 6.75427 6.79726 6.92195 7.02299 7.25019 7.37789 7.63995 7.69724 7.85040 7.96433 7.98070 8.54582 8.77956 9.34815 10.82756 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.002297 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.726704 B =12185.532986 C =12515.192197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.089 3.911 4 C 0.098 3.902 5 N -0.663 5.663 6 C 0.522 3.478 7 O -0.512 6.512 8 C 0.514 3.486 9 O -0.498 6.498 10 N -0.598 5.598 11 C 0.251 3.749 12 C -0.285 4.285 13 C 0.053 3.947 14 N -0.315 5.315 15 C 0.257 3.743 16 C -0.529 4.529 17 H 0.070 0.930 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.294 5.294 25 C -0.161 4.161 26 C -0.160 4.160 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.417 0.583 33 H 0.423 0.577 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.267 0.733 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 2.008 -26.779 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.011 3.989 4 C 0.011 3.989 5 N -0.316 5.316 6 C 0.303 3.697 7 O -0.386 6.386 8 C 0.293 3.707 9 O -0.371 6.371 10 N -0.247 5.247 11 C -0.002 4.002 12 C -0.317 4.317 13 C -0.097 4.097 14 N -0.097 5.097 15 C 0.139 3.861 16 C -0.567 4.567 17 H 0.088 0.912 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.208 1.208 24 N -0.126 5.126 25 C -0.198 4.198 26 C -0.198 4.198 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.255 0.745 33 H 0.260 0.740 34 H 0.178 0.822 35 H 0.188 0.812 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.943 2.643 -25.576 26.633 hybrid contribution 0.517 0.373 0.031 0.638 sum -6.426 3.016 -25.545 26.513 Atomic orbital electron populations 1.22763 0.80723 1.02998 1.00025 1.87902 1.19786 1.27153 1.95447 1.22223 0.89682 0.85455 1.01539 1.20523 0.90724 0.99373 0.88288 1.44857 1.56693 1.26225 1.03820 1.19890 0.79764 0.86222 0.83847 1.90766 1.42928 1.20846 1.84064 1.19878 0.80655 0.86816 0.83326 1.90711 1.41841 1.20917 1.83639 1.41980 1.58547 1.21156 1.02981 1.19012 1.01540 0.92162 0.87506 1.21517 1.14481 0.97075 0.98580 1.22580 1.01181 0.96442 0.89462 1.49168 1.42111 1.09934 1.08476 1.19803 0.98992 0.99521 0.67739 1.21289 1.36001 1.06656 0.92774 0.91196 1.24949 0.95752 0.97056 0.96334 1.69928 1.45849 1.34322 1.03217 0.86266 0.79287 0.82097 0.78836 1.19525 1.20661 1.20755 1.77404 1.23135 1.11171 1.00867 1.23404 1.02654 1.00774 0.92985 1.23404 1.02019 0.92455 1.01917 0.89408 0.93905 0.94074 0.91422 0.91903 0.74501 0.73989 0.82154 0.81222 0.93547 0.92367 0.92349 0.87616 0.87248 0.87525 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.86 10.66 -35.23 -0.38 -4.23 16 3 C 0.09 0.78 5.73 37.16 0.21 0.99 16 4 C 0.10 0.85 1.92 -131.82 -0.25 0.59 16 5 N -0.66 -6.84 5.39 -48.07 -0.26 -7.10 16 6 C 0.52 6.79 7.74 -11.64 -0.09 6.70 16 7 O -0.51 -7.38 15.61 5.49 0.09 -7.29 16 8 C 0.51 7.75 7.85 -11.64 -0.09 7.66 16 9 O -0.50 -8.09 13.61 5.46 0.07 -8.02 16 10 N -0.60 -9.98 5.43 -11.58 -0.06 -10.04 16 11 C 0.25 5.06 8.10 -154.56 -1.25 3.81 16 12 C -0.29 -5.51 9.60 -39.82 -0.38 -5.89 16 13 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 14 N -0.31 -7.25 3.67 -62.56 -0.23 -7.48 16 15 C 0.26 6.47 6.26 -5.20 -0.03 6.43 16 16 C -0.53 -14.66 9.23 -34.44 -0.32 -14.98 16 17 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 20 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 N -0.29 -6.82 12.42 31.41 0.39 -6.43 16 25 C -0.16 -0.93 10.15 -26.69 -0.27 -1.20 16 26 C -0.16 -1.09 10.18 -26.69 -0.27 -1.37 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.69 7.33 -51.93 -0.38 0.31 16 31 H 0.06 0.40 8.10 -51.92 -0.42 -0.02 16 32 H 0.42 3.87 8.31 -40.82 -0.34 3.54 16 33 H 0.42 6.46 8.29 -40.82 -0.34 6.12 16 34 H 0.16 2.91 5.91 -52.48 -0.31 2.60 16 35 H 0.17 2.65 8.06 -52.48 -0.42 2.23 16 36 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.11 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -32.80 370.94 -6.56 -39.36 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.56 Total: 7.24 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.93 Total: 6.54 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.57 Total: -55.55 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.22 Total: -19.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.80 -6.56 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116793875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.948 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds