Wall clock time and date at job start Tue Mar 31 2020 13:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00013 * 2 1 4 4 C 1.53003 * 109.47109 * 179.97438 * 3 2 1 5 5 N 1.46494 * 115.55021 * 304.30845 * 4 3 2 6 6 C 1.34776 * 119.99843 * 294.57091 * 5 4 3 7 7 O 1.21358 * 120.00398 * 354.93543 * 6 5 4 8 8 C 1.49343 * 119.99852 * 174.93923 * 6 5 4 9 9 O 1.21387 * 119.99733 * 359.97438 * 8 6 5 10 10 N 1.34775 * 120.00259 * 179.97438 * 8 6 5 11 11 C 1.39925 * 120.00352 * 179.97438 * 10 8 6 12 12 C 1.40460 * 125.98157 * 0.02562 * 11 10 8 13 13 C 1.35210 * 107.87007 * 179.97438 * 12 11 10 14 14 N 1.34986 * 107.87472 * 0.22546 * 13 12 11 15 15 C 1.46502 * 125.96989 * 179.73677 * 14 13 12 16 16 C 1.50692 * 109.47380 * 125.00046 * 15 14 13 17 17 H 1.08002 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00499 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99630 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00499 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46870 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47397 * 119.99552 * 20 18 16 23 23 H 1.48500 * 109.46859 * 239.99849 * 20 18 16 24 24 N 1.31273 * 125.98395 * 179.97438 * 11 10 8 25 25 C 1.53002 * 117.49502 * 89.98250 * 4 3 2 26 26 C 1.53002 * 117.49391 * 158.63766 * 4 3 2 27 27 H 1.08994 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47343 * 300.00517 * 1 2 3 29 29 H 1.09007 * 109.47017 * 59.99963 * 1 2 3 30 30 H 1.08996 * 109.47411 * 59.99801 * 3 2 1 31 31 H 1.09008 * 109.46654 * 299.99664 * 3 2 1 32 32 H 0.97000 * 119.99938 * 114.56596 * 5 4 3 33 33 H 0.96999 * 119.99752 * 0.02562 * 10 8 6 34 34 H 1.08003 * 126.06454 * 359.95667 * 12 11 10 35 35 H 1.08003 * 126.06343 * 179.97438 * 13 12 11 36 36 H 1.09009 * 109.47064 * 244.99930 * 15 14 13 37 37 H 1.09002 * 109.47287 * 4.99672 * 15 14 13 38 38 H 0.96999 * 119.99680 * 180.02562 * 19 18 16 39 39 H 1.09009 * 117.49222 * 214.99993 * 25 4 3 40 40 H 1.08998 * 117.50514 * 0.02562 * 25 4 3 41 41 H 1.08998 * 117.50517 * 359.97438 * 26 4 3 42 42 H 1.09005 * 117.49273 * 144.97698 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1061 0.3923 1.0928 6 6 3.9916 0.8191 2.3660 7 8 3.4980 1.9026 2.6009 8 6 4.4724 -0.0414 3.4880 9 8 4.9658 -1.1253 3.2531 10 7 4.3584 0.3855 4.7613 11 6 4.8084 -0.4210 5.8125 12 6 5.3962 -1.6903 5.6856 13 6 5.6907 -2.1372 6.9273 14 7 5.3017 -1.1933 7.8104 15 6 5.4304 -1.2731 9.2676 16 6 6.1837 -0.0694 9.7720 17 1 6.5322 0.6799 9.0767 18 6 6.4290 0.0749 11.1211 19 7 6.0050 -0.8379 11.9678 20 14 7.3622 1.5673 11.7465 21 1 7.7263 2.4392 10.6008 22 1 6.5059 2.3256 12.6936 23 1 8.5969 1.1234 12.4420 24 7 4.7559 -0.1233 7.0900 25 6 4.2402 1.1282 -1.3563 26 6 4.3396 2.3888 -0.4936 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 4.5662 -0.4394 0.8995 33 1 3.9638 1.2514 4.9489 34 1 5.5800 -2.2162 4.7603 35 1 6.1514 -3.0835 7.1698 36 1 4.4385 -1.2965 9.7192 37 1 5.9729 -2.1798 9.5354 38 1 6.1773 -0.7362 12.9169 39 1 5.1284 0.5015 -1.4363 40 1 3.6173 1.1776 -2.2494 41 1 3.7822 3.2669 -0.8197 42 1 5.2931 2.5916 -0.0059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116793875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:21 Heat of formation + Delta-G solvation = -17.349778 kcal Electronic energy + Delta-G solvation = -26275.001341 eV Core-core repulsion = 22257.906972 eV Total energy + Delta-G solvation = -4017.094369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.47475 -41.63013 -40.18975 -38.95595 -37.74059 -36.49700 -35.34673 -33.95739 -32.84688 -31.03443 -29.21822 -28.83469 -26.91604 -26.41709 -24.80972 -23.55626 -22.98272 -22.05044 -21.16453 -20.83775 -19.52921 -18.71609 -18.30239 -17.91142 -17.48154 -17.23591 -17.07906 -16.88487 -16.55458 -16.14509 -16.06710 -15.73037 -15.43319 -15.05531 -14.78393 -14.59148 -14.24955 -13.88767 -13.72590 -13.43948 -13.34533 -13.02900 -12.81575 -12.63526 -12.51379 -12.42028 -12.33463 -12.15314 -11.95639 -11.66669 -11.44057 -11.31457 -10.85294 -10.73252 -10.53294 -10.29056 -9.84949 -9.23261 -8.34710 -6.48097 0.02811 0.81384 1.12785 1.36488 1.38473 1.51079 1.71814 1.81028 2.23922 2.33219 2.42354 2.53954 2.94708 2.97667 3.19338 3.69677 3.83974 3.89956 3.96115 4.20764 4.30509 4.37637 4.50328 4.54287 4.61861 4.66837 4.73966 4.82859 4.83829 4.87305 4.93982 4.97898 5.01835 5.17228 5.24154 5.55505 5.73431 5.76617 5.84428 6.12502 6.17154 6.24381 6.54811 6.63437 6.78253 6.94947 7.21920 8.73457 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.002297 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.726704 B =12185.532986 C =12515.192197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.089 3.911 4 C 0.065 3.935 5 N -0.648 5.648 6 C 0.528 3.472 7 O -0.529 6.529 8 C 0.517 3.483 9 O -0.507 6.507 10 N -0.600 5.600 11 C 0.257 3.743 12 C -0.288 4.288 13 C 0.061 3.939 14 N -0.340 5.340 15 C 0.271 3.729 16 C -0.548 4.548 17 H 0.051 0.949 18 C 0.019 3.981 19 N -0.919 5.919 20 Si 0.971 3.029 21 H -0.276 1.276 22 H -0.274 1.274 23 H -0.269 1.269 24 N -0.341 5.341 25 C -0.135 4.135 26 C -0.159 4.159 27 H 0.094 0.906 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.422 0.578 33 H 0.428 0.572 34 H 0.176 0.824 35 H 0.208 0.792 36 H 0.023 0.977 37 H 0.064 0.936 38 H 0.273 0.727 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.185 2.203 -28.977 29.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.012 3.988 4 C -0.022 4.022 5 N -0.300 5.300 6 C 0.308 3.692 7 O -0.405 6.405 8 C 0.298 3.702 9 O -0.380 6.380 10 N -0.250 5.250 11 C 0.003 3.997 12 C -0.319 4.319 13 C -0.087 4.087 14 N -0.122 5.122 15 C 0.152 3.848 16 C -0.586 4.586 17 H 0.070 0.930 18 C -0.181 4.181 19 N -0.558 5.558 20 Si 0.795 3.205 21 H -0.200 1.200 22 H -0.199 1.199 23 H -0.194 1.194 24 N -0.172 5.172 25 C -0.172 4.172 26 C -0.197 4.197 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.261 0.739 33 H 0.266 0.734 34 H 0.193 0.807 35 H 0.225 0.775 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.445 2.821 -27.829 28.705 hybrid contribution 0.314 0.271 0.545 0.685 sum -6.131 3.092 -27.284 28.135 Atomic orbital electron populations 1.22904 0.79626 1.03729 1.00732 1.87862 1.21146 1.28005 1.95584 1.22267 0.89746 0.85067 1.01754 1.20887 0.91000 1.01098 0.89169 1.44866 1.55544 1.26338 1.03276 1.19464 0.79967 0.85691 0.84121 1.90765 1.44093 1.21406 1.84259 1.20355 0.79761 0.86873 0.83227 1.90685 1.42080 1.21461 1.83782 1.42097 1.58829 1.21178 1.02859 1.19332 1.00158 0.92716 0.87457 1.21748 1.14301 0.96767 0.99050 1.23249 0.99754 0.96894 0.88829 1.48925 1.44126 1.11138 1.07999 1.19402 0.97274 0.98811 0.69284 1.21419 1.36787 1.07310 0.93055 0.93047 1.25720 0.96385 0.99693 0.96346 1.69995 1.46443 1.35700 1.03679 0.85311 0.78458 0.78667 0.78047 1.20050 1.19906 1.19365 1.77318 1.25236 1.12379 1.02250 1.23548 1.02399 0.99347 0.91926 1.23485 1.01346 0.93049 1.01814 0.88749 0.94503 0.92053 0.93695 0.89161 0.73933 0.73431 0.80728 0.77536 0.95913 0.91864 0.91808 0.86719 0.85194 0.86085 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -7.65 10.66 -148.98 -1.59 -9.23 16 3 C 0.09 1.43 5.73 71.98 0.41 1.84 16 4 C 0.07 1.00 1.92 3.61 0.01 1.01 16 5 N -0.65 -12.61 5.39 -424.35 -2.29 -14.90 16 6 C 0.53 13.46 7.74 87.24 0.68 14.13 16 7 O -0.53 -15.21 15.61 -3.27 -0.05 -15.26 16 8 C 0.52 15.40 7.85 87.24 0.69 16.08 16 9 O -0.51 -15.98 13.61 -3.36 -0.05 -16.03 16 10 N -0.60 -20.15 5.43 -308.90 -1.68 -21.83 16 11 C 0.26 10.47 8.10 133.40 1.08 11.55 16 12 C -0.29 -10.89 9.60 22.11 0.21 -10.67 16 13 C 0.06 2.34 11.43 83.51 0.95 3.30 16 14 N -0.34 -15.89 3.67 -351.84 -1.29 -17.18 16 15 C 0.27 13.98 6.26 85.63 0.54 14.52 16 16 C -0.55 -30.98 9.23 25.60 0.24 -30.75 16 17 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 18 C 0.02 1.05 5.46 84.65 0.46 1.52 16 19 N -0.92 -52.03 13.29 21.45 0.28 -51.74 16 20 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 N -0.34 -16.15 12.42 -54.54 -0.68 -16.83 16 25 C -0.14 -1.14 10.15 30.62 0.31 -0.83 16 26 C -0.16 -1.82 10.18 30.62 0.31 -1.51 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.04 0.91 7.33 -2.39 -0.02 0.89 16 31 H 0.09 0.91 8.10 -2.38 -0.02 0.89 16 32 H 0.42 7.23 8.31 -92.71 -0.77 6.46 16 33 H 0.43 13.37 8.29 -92.71 -0.77 12.60 16 34 H 0.18 6.08 5.91 -2.91 -0.02 6.06 16 35 H 0.21 6.03 8.06 -2.91 -0.02 6.01 16 36 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.06 3.15 8.07 -2.39 -0.02 3.13 16 38 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 1.30 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -70.98 370.94 1.36 -69.61 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.46 Total: 25.68 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 7.13 Total: 21.77 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -5.65 Total: -122.48 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.68 Total: -40.52 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.98 1.36 -69.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116793875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.264 kcal (2) G-P(sol) polarization free energy of solvation -70.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds