Wall clock time and date at job start Tue Mar 31 2020 12:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42900 * 109.47546 * 2 1 4 4 C 1.42897 * 113.99951 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47011 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.65936 * 183.53500 * 5 4 3 7 7 C 1.51582 * 110.60192 * 306.45718 * 5 4 3 8 8 O 1.21242 * 127.15572 * 298.56048 * 7 5 4 9 9 N 1.34770 * 105.68769 * 118.52074 * 7 5 4 10 10 C 1.40398 * 124.17813 * 179.97438 * 9 7 5 11 11 C 1.40375 * 125.96645 * 4.99862 * 10 9 7 12 12 C 1.35245 * 107.86821 * 179.73945 * 11 10 9 13 13 N 1.34967 * 107.85564 * 0.26418 * 12 11 10 14 14 C 1.46503 * 125.97855 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46741 * 125.00567 * 14 13 12 16 16 H 1.07999 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99599 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00684 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99883 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47326 * 89.99395 * 19 17 15 21 21 H 1.48500 * 109.47382 * 209.99983 * 19 17 15 22 22 H 1.48508 * 109.47033 * 329.99854 * 19 17 15 23 23 N 1.31197 * 125.96881 * 185.21975 * 10 9 7 24 24 C 1.33789 * 111.64162 * 0.23142 * 9 7 5 25 25 O 1.21537 * 123.77108 * 179.76826 * 24 9 7 26 26 N 1.34528 * 112.46197 * 359.59577 * 24 9 7 27 27 C 1.46502 * 126.69368 * 180.12490 * 26 24 9 28 28 H 1.09003 * 109.48030 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47358 * 300.00313 * 1 2 3 30 30 H 1.09002 * 109.47043 * 60.00137 * 1 2 3 31 31 H 1.09000 * 109.46932 * 239.99363 * 2 1 3 32 32 H 1.09001 * 109.47290 * 120.00352 * 2 1 3 33 33 H 1.08999 * 109.47052 * 60.00164 * 4 3 2 34 34 H 1.08999 * 109.47447 * 299.99817 * 4 3 2 35 35 H 1.08002 * 126.06854 * 0.02562 * 11 10 9 36 36 H 1.08003 * 126.06921 * 180.30069 * 12 11 10 37 37 H 1.09000 * 109.47168 * 245.00364 * 14 13 12 38 38 H 1.09003 * 109.46867 * 5.00668 * 14 13 12 39 39 H 0.96989 * 120.00500 * 180.02562 * 18 17 15 40 40 H 1.08991 * 109.47236 * 270.30353 * 27 26 24 41 41 H 1.08998 * 109.46443 * 30.30969 * 27 26 24 42 42 H 1.09003 * 109.46973 * 150.30742 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9382 -0.0012 6 1 4.9081 3.0472 -0.0645 7 6 3.1480 3.6707 -1.1423 8 8 3.2751 3.4554 -2.3287 9 7 2.3743 4.6104 -0.5639 10 6 1.5699 5.5161 -1.2737 11 6 1.3674 5.5258 -2.6627 12 6 0.5266 6.5447 -2.9524 13 7 0.2111 7.1628 -1.7948 14 6 -0.6747 8.3208 -1.6511 15 6 -1.7664 7.9985 -0.6634 16 1 -1.7974 7.0281 -0.1904 17 6 -2.7260 8.9422 -0.3644 18 7 -2.6886 10.1237 -0.9407 19 14 -4.0796 8.5425 0.8594 20 1 -3.6383 8.9196 2.2263 21 1 -5.3055 9.3030 0.5075 22 1 -4.3710 7.0869 0.8173 23 7 0.8795 6.5039 -0.7550 24 6 2.4716 4.5770 0.7700 25 8 1.8707 5.3307 1.5103 26 7 3.3061 3.6137 1.2006 27 6 3.6383 3.3013 2.5928 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8332 0.9765 -0.8908 34 1 3.8340 0.9763 0.8891 35 1 1.8020 4.8384 -3.3734 36 1 0.1703 6.8152 -3.9355 37 1 -0.1007 9.1751 -1.2922 38 1 -1.1183 8.5610 -2.6174 39 1 -3.3635 10.7877 -0.7300 40 1 4.5021 3.8902 2.9011 41 1 2.7883 3.5409 3.2316 42 1 3.8718 2.2403 2.6813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117195899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:07 Heat of formation + Delta-G solvation = 13.412515 kcal Electronic energy + Delta-G solvation = -27848.623642 eV Core-core repulsion = 23832.863227 eV Total energy + Delta-G solvation = -4015.760416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.49928 -40.26362 -38.60034 -38.24632 -36.05985 -35.27155 -33.43239 -31.95684 -31.32028 -29.88157 -29.43727 -27.79866 -26.41493 -24.63384 -23.38101 -23.06596 -22.03823 -21.54743 -19.92819 -19.38836 -17.65614 -17.23209 -16.84774 -16.55011 -16.53759 -16.30233 -15.74862 -15.27859 -14.97300 -14.74497 -14.53891 -14.22793 -14.19033 -13.76270 -13.48702 -13.20024 -12.94768 -12.80926 -12.50350 -12.45907 -12.32375 -12.22530 -11.76407 -11.69440 -11.46178 -11.00804 -10.85182 -10.68535 -10.54145 -10.25128 -10.16760 -9.96536 -9.69399 -9.48883 -9.08521 -8.58143 -8.29099 -7.67408 -6.19283 -4.23306 1.64740 1.94442 2.61711 2.76434 2.98692 3.21077 3.30304 3.35690 3.41501 3.65310 3.78157 3.89417 4.34132 4.38477 4.61213 4.75319 4.78641 4.86376 4.95181 5.02299 5.09961 5.16037 5.26098 5.30058 5.42537 5.45951 5.53421 5.70286 5.73978 5.96726 6.04559 6.27120 6.34729 6.51873 6.80875 6.82924 7.05314 7.12383 7.32745 7.48906 7.74971 7.90596 7.99682 8.30026 8.55948 8.85415 9.42273 10.89908 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.003703 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.747990 B = 7558.802162 C = 7970.299290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.101 3.899 6 H 0.141 0.859 7 C 0.542 3.458 8 O -0.458 6.458 9 N -0.481 5.481 10 C 0.248 3.752 11 C -0.284 4.284 12 C 0.058 3.942 13 N -0.315 5.315 14 C 0.257 3.743 15 C -0.527 4.527 16 H 0.070 0.930 17 C 0.063 3.937 18 N -0.897 5.897 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.272 1.272 23 N -0.249 5.249 24 C 0.698 3.302 25 O -0.498 6.498 26 N -0.624 5.624 27 C 0.126 3.874 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.174 0.826 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.267 0.733 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.968 -20.479 1.379 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.300 6.300 4 C -0.014 4.014 5 C -0.007 4.007 6 H 0.158 0.842 7 C 0.328 3.672 8 O -0.326 6.326 9 N -0.221 5.221 10 C -0.003 4.003 11 C -0.315 4.315 12 C -0.092 4.092 13 N -0.098 5.098 14 C 0.140 3.860 15 C -0.565 4.565 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.535 5.535 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.078 5.078 24 C 0.399 3.601 25 O -0.367 6.367 26 N -0.366 5.366 27 C -0.015 4.015 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.191 0.809 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.045 -19.074 2.360 23.804 hybrid contribution -0.339 -0.793 -0.109 0.870 sum 13.705 -19.867 2.251 24.241 Atomic orbital electron populations 1.21747 0.93420 1.02202 1.03725 1.22468 0.95979 0.83009 0.99960 1.88021 1.19457 1.27144 1.95422 1.22590 0.83447 0.93069 1.02299 1.22197 1.01098 0.93262 0.84149 0.84154 1.20457 0.78325 0.79079 0.89369 1.90752 1.61544 1.65641 1.14643 1.42824 1.40700 1.31158 1.07461 1.18758 0.97702 0.93630 0.90240 1.21035 1.11053 1.06368 0.93076 1.22495 0.98586 0.95015 0.93056 1.49401 1.33618 1.24568 1.02196 1.19826 0.87109 0.79484 0.99576 1.21257 1.09270 1.01192 1.24789 0.91204 1.24915 0.98064 0.94589 0.96368 1.69913 1.35707 1.04977 1.42922 0.86320 0.80424 0.78577 0.81164 1.20253 1.21019 1.19700 1.77795 1.11129 1.07453 1.11458 1.15774 0.80710 0.82023 0.81570 1.91092 1.46938 1.42384 1.56239 1.47374 1.47774 1.35139 1.06266 1.21442 1.01857 1.00722 0.77478 0.91012 0.91713 0.91564 0.93156 0.93328 0.90563 0.91136 0.83148 0.80895 0.93448 0.92267 0.92359 0.92066 0.89835 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.15 0.38 -1.06 16 2 C 0.06 0.54 6.66 37.15 0.25 0.79 16 3 O -0.38 -4.47 9.74 -35.23 -0.34 -4.82 16 4 C 0.06 0.52 5.71 37.16 0.21 0.73 16 5 C 0.10 1.02 3.86 -68.20 -0.26 0.75 16 6 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 7 C 0.54 8.21 7.11 -10.55 -0.08 8.14 16 8 O -0.46 -7.47 15.90 5.59 0.09 -7.38 16 9 N -0.48 -9.10 2.83 -65.79 -0.19 -9.29 16 10 C 0.25 5.51 7.67 -154.18 -1.18 4.33 16 11 C -0.28 -5.65 9.98 -39.84 -0.40 -6.05 16 12 C 0.06 1.17 11.44 -17.24 -0.20 0.97 16 13 N -0.32 -7.65 3.67 -62.55 -0.23 -7.88 16 14 C 0.26 6.74 6.26 -5.19 -0.03 6.71 16 15 C -0.53 -15.31 9.24 -34.44 -0.32 -15.62 16 16 H 0.07 2.14 7.81 -52.49 -0.41 1.73 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 19 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 N -0.25 -6.38 11.34 31.48 0.36 -6.03 16 24 C 0.70 12.90 8.28 -88.02 -0.73 12.18 16 25 O -0.50 -11.47 16.50 5.33 0.09 -11.38 16 26 N -0.62 -7.75 3.05 -180.27 -0.55 -8.30 16 27 C 0.13 1.05 11.04 59.85 0.66 1.71 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.36 7.41 -51.93 -0.38 -0.03 16 35 H 0.15 2.72 6.69 -52.49 -0.35 2.37 16 36 H 0.17 2.71 8.06 -52.48 -0.42 2.28 16 37 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.49 8.07 -51.93 -0.42 1.07 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 42 H 0.07 0.37 7.34 -51.93 -0.38 -0.01 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -37.58 365.16 -7.07 -44.65 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.73 Total: -2.41 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: -1.79 Total: 15.27 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.13 Total: -56.74 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.17 Total: -23.58 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.58 -7.07 -44.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117195899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.060 kcal (2) G-P(sol) polarization free energy of solvation -37.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds