Wall clock time and date at job start Tue Mar 31 2020 12:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42900 * 109.47546 * 2 1 4 4 C 1.42897 * 113.99951 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47011 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.65936 * 183.53500 * 5 4 3 7 7 C 1.51582 * 110.60192 * 306.45718 * 5 4 3 8 8 O 1.21242 * 127.15572 * 298.56048 * 7 5 4 9 9 N 1.34770 * 105.68769 * 118.52074 * 7 5 4 10 10 C 1.40398 * 124.17813 * 179.97438 * 9 7 5 11 11 C 1.40375 * 125.96645 * 4.99862 * 10 9 7 12 12 C 1.35245 * 107.86821 * 179.73945 * 11 10 9 13 13 N 1.34967 * 107.85564 * 0.26418 * 12 11 10 14 14 C 1.46503 * 125.97855 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46741 * 125.00567 * 14 13 12 16 16 H 1.07999 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99599 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00684 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99883 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47326 * 89.99395 * 19 17 15 21 21 H 1.48500 * 109.47382 * 209.99983 * 19 17 15 22 22 H 1.48508 * 109.47033 * 329.99854 * 19 17 15 23 23 N 1.31197 * 125.96881 * 185.21975 * 10 9 7 24 24 C 1.33789 * 111.64162 * 0.23142 * 9 7 5 25 25 O 1.21537 * 123.77108 * 179.76826 * 24 9 7 26 26 N 1.34528 * 112.46197 * 359.59577 * 24 9 7 27 27 C 1.46502 * 126.69368 * 180.12490 * 26 24 9 28 28 H 1.09003 * 109.48030 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47358 * 300.00313 * 1 2 3 30 30 H 1.09002 * 109.47043 * 60.00137 * 1 2 3 31 31 H 1.09000 * 109.46932 * 239.99363 * 2 1 3 32 32 H 1.09001 * 109.47290 * 120.00352 * 2 1 3 33 33 H 1.08999 * 109.47052 * 60.00164 * 4 3 2 34 34 H 1.08999 * 109.47447 * 299.99817 * 4 3 2 35 35 H 1.08002 * 126.06854 * 0.02562 * 11 10 9 36 36 H 1.08003 * 126.06921 * 180.30069 * 12 11 10 37 37 H 1.09000 * 109.47168 * 245.00364 * 14 13 12 38 38 H 1.09003 * 109.46867 * 5.00668 * 14 13 12 39 39 H 0.96989 * 120.00500 * 180.02562 * 18 17 15 40 40 H 1.08991 * 109.47236 * 270.30353 * 27 26 24 41 41 H 1.08998 * 109.46443 * 30.30969 * 27 26 24 42 42 H 1.09003 * 109.46973 * 150.30742 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9382 -0.0012 6 1 4.9081 3.0472 -0.0645 7 6 3.1480 3.6707 -1.1423 8 8 3.2751 3.4554 -2.3287 9 7 2.3743 4.6104 -0.5639 10 6 1.5699 5.5161 -1.2737 11 6 1.3674 5.5258 -2.6627 12 6 0.5266 6.5447 -2.9524 13 7 0.2111 7.1628 -1.7948 14 6 -0.6747 8.3208 -1.6511 15 6 -1.7664 7.9985 -0.6634 16 1 -1.7974 7.0281 -0.1904 17 6 -2.7260 8.9422 -0.3644 18 7 -2.6886 10.1237 -0.9407 19 14 -4.0796 8.5425 0.8594 20 1 -3.6383 8.9196 2.2263 21 1 -5.3055 9.3030 0.5075 22 1 -4.3710 7.0869 0.8173 23 7 0.8795 6.5039 -0.7550 24 6 2.4716 4.5770 0.7700 25 8 1.8707 5.3307 1.5103 26 7 3.3061 3.6137 1.2006 27 6 3.6383 3.3013 2.5928 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8332 0.9765 -0.8908 34 1 3.8340 0.9763 0.8891 35 1 1.8020 4.8384 -3.3734 36 1 0.1703 6.8152 -3.9355 37 1 -0.1007 9.1751 -1.2922 38 1 -1.1183 8.5610 -2.6174 39 1 -3.3635 10.7877 -0.7300 40 1 4.5021 3.8902 2.9011 41 1 2.7883 3.5409 3.2316 42 1 3.8718 2.2403 2.6813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117195899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:06 Heat of formation + Delta-G solvation = -13.402209 kcal Electronic energy + Delta-G solvation = -27849.786416 eV Core-core repulsion = 23832.863227 eV Total energy + Delta-G solvation = -4016.923189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.74668 -41.91237 -39.84047 -39.05730 -37.30487 -36.62642 -35.46026 -33.15619 -32.67158 -31.17881 -30.73079 -29.21768 -27.92308 -25.73237 -25.16237 -23.73795 -23.15609 -23.09890 -21.42316 -20.79847 -18.89215 -18.72665 -18.44631 -17.85070 -17.68666 -17.23221 -17.15482 -16.63098 -16.30503 -16.04329 -15.85718 -15.65891 -15.45692 -15.03246 -14.65860 -14.31927 -14.20581 -14.09457 -13.99227 -13.72672 -13.56074 -13.16994 -13.01764 -12.96775 -12.78093 -12.42014 -12.37206 -12.20670 -12.15387 -11.99596 -11.73455 -11.54694 -11.14830 -10.76437 -10.59232 -10.16741 -9.92691 -9.40808 -8.38147 -6.50763 0.45675 0.66799 0.96521 1.32204 1.35047 1.44625 1.47725 1.71119 2.09172 2.29915 2.33262 2.57569 2.81194 2.94149 3.55729 3.71017 3.90793 3.98295 4.12812 4.15842 4.27336 4.38638 4.41377 4.48091 4.50792 4.66823 4.68189 4.72658 4.80063 4.83562 4.90877 4.93778 4.99438 5.09799 5.21626 5.36589 5.52298 5.56675 5.75509 5.98037 6.17066 6.18266 6.28573 6.58664 6.83607 7.00478 7.18705 8.70435 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.003703 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.747990 B = 7558.802162 C = 7970.299290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.061 3.939 3 O -0.425 6.425 4 C 0.061 3.939 5 C 0.112 3.888 6 H 0.196 0.804 7 C 0.532 3.468 8 O -0.473 6.473 9 N -0.496 5.496 10 C 0.246 3.754 11 C -0.282 4.282 12 C 0.069 3.931 13 N -0.341 5.341 14 C 0.272 3.728 15 C -0.550 4.550 16 H 0.042 0.958 17 C 0.023 3.977 18 N -0.917 5.917 19 Si 0.968 3.032 20 H -0.276 1.276 21 H -0.263 1.263 22 H -0.276 1.276 23 N -0.312 5.312 24 C 0.684 3.316 25 O -0.563 6.563 26 N -0.606 5.606 27 C 0.117 3.883 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.172 0.828 36 H 0.218 0.782 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.274 0.726 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.751 -23.404 1.343 28.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.015 4.015 3 O -0.346 6.346 4 C -0.016 4.016 5 C 0.006 3.994 6 H 0.212 0.788 7 C 0.321 3.679 8 O -0.342 6.342 9 N -0.238 5.238 10 C -0.007 4.007 11 C -0.313 4.313 12 C -0.079 4.079 13 N -0.123 5.123 14 C 0.154 3.846 15 C -0.588 4.588 16 H 0.061 0.939 17 C -0.177 4.177 18 N -0.555 5.555 19 Si 0.792 3.208 20 H -0.202 1.202 21 H -0.187 1.187 22 H -0.201 1.201 23 N -0.141 5.141 24 C 0.386 3.614 25 O -0.437 6.437 26 N -0.345 5.345 27 C -0.022 4.022 28 H 0.115 0.885 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.189 0.811 36 H 0.234 0.766 37 H 0.039 0.961 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.892 -22.068 2.309 27.293 hybrid contribution -0.784 0.003 -0.143 0.797 sum 15.108 -22.066 2.166 26.830 Atomic orbital electron populations 1.21795 0.94958 1.03145 1.01468 1.22590 0.94832 0.82161 1.01913 1.87987 1.21750 1.28984 1.95837 1.22909 0.82051 0.91180 1.05472 1.22689 1.03050 0.93515 0.80164 0.78782 1.21504 0.77561 0.78254 0.90591 1.90727 1.61960 1.65798 1.15689 1.43272 1.40991 1.31406 1.08111 1.19291 0.96784 0.93054 0.91535 1.21307 1.10917 1.06601 0.92453 1.23261 0.97292 0.93863 0.93503 1.49152 1.34685 1.25083 1.03389 1.19422 0.86350 0.79692 0.99163 1.21340 1.10960 1.00451 1.26085 0.93921 1.25655 0.99928 0.94353 0.97799 1.69966 1.36503 1.05477 1.43572 0.85420 0.78370 0.78255 0.78787 1.20191 1.18697 1.20123 1.77707 1.13476 1.09733 1.13222 1.16190 0.81281 0.82779 0.81130 1.91034 1.49879 1.45233 1.57511 1.47616 1.45519 1.32936 1.08441 1.21837 1.01568 1.03993 0.74806 0.88508 0.93637 0.94094 0.91646 0.90677 0.88338 0.86776 0.81053 0.76591 0.96054 0.91172 0.91653 0.90035 0.92155 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.28 71.98 0.74 -2.09 16 2 C 0.06 0.88 6.66 71.98 0.48 1.36 16 3 O -0.42 -8.94 9.74 -148.98 -1.45 -10.39 16 4 C 0.06 0.69 5.71 71.98 0.41 1.10 16 5 C 0.11 1.83 3.86 44.37 0.17 2.01 16 6 H 0.20 1.20 8.14 -2.39 -0.02 1.18 16 7 C 0.53 15.38 7.11 87.94 0.63 16.01 16 8 O -0.47 -14.67 15.90 -2.91 -0.05 -14.71 16 9 N -0.50 -19.11 2.83 -599.32 -1.70 -20.81 16 10 C 0.25 11.35 7.67 133.24 1.02 12.38 16 11 C -0.28 -11.28 9.98 22.10 0.22 -11.06 16 12 C 0.07 2.78 11.44 83.52 0.96 3.73 16 13 N -0.34 -17.24 3.67 -351.82 -1.29 -18.53 16 14 C 0.27 14.93 6.26 85.63 0.54 15.46 16 15 C -0.55 -33.41 9.24 25.60 0.24 -33.17 16 16 H 0.04 2.77 7.81 -2.91 -0.02 2.75 16 17 C 0.02 1.36 5.46 84.65 0.46 1.83 16 18 N -0.92 -53.79 13.29 21.45 0.28 -53.51 16 19 Si 0.97 46.61 29.54 68.60 2.03 48.63 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 23 N -0.31 -16.97 11.34 -54.33 -0.62 -17.58 16 24 C 0.68 25.96 8.28 179.44 1.49 27.45 16 25 O -0.56 -27.65 16.50 -3.83 -0.06 -27.71 16 26 N -0.61 -13.84 3.05 -842.68 -2.57 -16.41 16 27 C 0.12 1.62 11.04 127.77 1.41 3.03 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 0.37 7.41 -2.39 -0.02 0.35 16 35 H 0.17 6.03 6.69 -2.91 -0.02 6.01 16 36 H 0.22 6.41 8.06 -2.91 -0.02 6.38 16 37 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 3.62 8.07 -2.39 -0.02 3.60 16 39 H 0.27 14.97 8.31 -92.72 -0.77 14.20 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 1.16 8.04 -2.39 -0.02 1.14 16 42 H 0.12 0.55 7.34 -2.39 -0.02 0.53 16 Total: -1.00 -90.16 365.16 4.37 -85.79 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.04 Total: 7.22 kcal Atomic # 6 Polarization: 29.27 SS G_CDS: 8.76 Total: 38.02 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -5.89 Total: -126.85 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -1.56 Total: -52.81 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -90.16 4.37 -85.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117195899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.385 kcal (2) G-P(sol) polarization free energy of solvation -90.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds