Wall clock time and date at job start Tue Mar 31 2020 12:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46857 * 2 1 4 4 C 1.42903 * 113.99747 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46923 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.65159 * 172.08830 * 5 4 3 7 7 C 1.51577 * 110.76349 * 49.27221 * 5 4 3 8 8 O 1.21242 * 127.16136 * 61.64021 * 7 5 4 9 9 N 1.34763 * 105.68390 * 241.71013 * 7 5 4 10 10 C 1.40406 * 124.17843 * 179.97438 * 9 7 5 11 11 C 1.40379 * 125.96814 * 184.72830 * 10 9 7 12 12 C 1.35244 * 107.86812 * 179.97438 * 11 10 9 13 13 N 1.34968 * 107.85630 * 0.02562 * 12 11 10 14 14 C 1.46497 * 125.97623 * 179.97438 * 13 12 11 15 15 C 1.50708 * 109.47141 * 124.99692 * 14 13 12 16 16 H 1.07991 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 N 1.31199 * 125.97218 * 5.03067 * 10 9 7 24 24 C 1.33796 * 111.64843 * 359.66084 * 9 7 5 25 25 O 1.21528 * 123.77306 * 180.22854 * 24 9 7 26 26 N 1.34527 * 112.44782 * 0.22740 * 24 9 7 27 27 C 1.46507 * 126.68228 * 180.02562 * 26 24 9 28 28 H 1.09007 * 109.46641 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46775 * 299.99338 * 1 2 3 30 30 H 1.08995 * 109.47270 * 59.99952 * 1 2 3 31 31 H 1.09004 * 109.47273 * 240.00081 * 2 1 3 32 32 H 1.09001 * 109.47644 * 119.99838 * 2 1 3 33 33 H 1.08998 * 109.47152 * 60.00463 * 4 3 2 34 34 H 1.08998 * 109.47644 * 300.00100 * 4 3 2 35 35 H 1.07994 * 126.06627 * 0.02562 * 11 10 9 36 36 H 1.08004 * 126.07107 * 179.97438 * 12 11 10 37 37 H 1.08994 * 109.47995 * 4.99667 * 14 13 12 38 38 H 1.09000 * 109.47072 * 244.99625 * 14 13 12 39 39 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.47592 * 359.97438 * 27 26 24 41 41 H 1.09002 * 109.46910 * 119.98085 * 27 26 24 42 42 H 1.09008 * 109.47101 * 239.97440 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 -0.0012 6 1 4.9006 3.0495 0.1388 7 6 3.0708 3.6964 1.0730 8 8 3.1158 3.5094 2.2700 9 7 2.3382 4.6204 0.4205 10 6 1.4858 5.5405 1.0514 11 6 0.6372 6.4544 0.4070 12 6 -0.0150 7.1583 1.3600 13 7 0.4020 6.7108 2.5632 14 6 -0.0503 7.2008 3.8676 15 6 -0.5650 6.0455 4.6872 16 1 -0.5556 5.0463 4.2776 17 6 -1.0468 6.2641 5.9604 18 7 -1.4954 5.2559 6.6759 19 14 -1.0624 7.9923 6.6692 20 1 0.2174 8.2484 7.3777 21 1 -2.1920 8.1257 7.6239 22 1 -1.2250 8.9770 5.5695 23 7 1.3472 5.7002 2.3463 24 6 2.5286 4.5571 -0.9023 25 8 1.9799 5.2919 -1.6998 26 7 3.3954 3.5891 -1.2508 27 6 3.8279 3.2489 -2.6086 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8332 0.9768 -0.8908 34 1 3.8341 0.9765 0.8891 35 1 0.5245 6.5736 -0.6604 36 1 -0.7401 7.9401 1.1887 37 1 -0.8485 7.9293 3.7254 38 1 0.7835 7.6723 4.3877 39 1 -1.8347 5.4098 7.5714 40 1 3.3352 3.9084 -3.3229 41 1 4.9082 3.3705 -2.6870 42 1 3.5621 2.2143 -2.8261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117195900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:09 Heat of formation + Delta-G solvation = 18.648837 kcal Electronic energy + Delta-G solvation = -27885.873906 eV Core-core repulsion = 23870.340554 eV Total energy + Delta-G solvation = -4015.533352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.52253 -40.33853 -38.59203 -38.13339 -36.15423 -35.30752 -33.39208 -31.90372 -31.53991 -29.95529 -29.46410 -27.98701 -26.74492 -24.68999 -23.07596 -22.95745 -22.07882 -21.43606 -19.90505 -19.46918 -17.67605 -17.25695 -16.87167 -16.82854 -16.47190 -16.29782 -15.84825 -15.33155 -14.97544 -14.79160 -14.57016 -14.30265 -14.10308 -13.60277 -13.39450 -13.20786 -13.12841 -12.82608 -12.69566 -12.48425 -12.41604 -12.28450 -12.03271 -11.61384 -11.37925 -11.16250 -10.88607 -10.69212 -10.57408 -10.27427 -10.05572 -9.88226 -9.72446 -9.50764 -9.19600 -8.72443 -8.35790 -7.71380 -6.18421 -4.20829 1.76839 1.88283 2.48234 2.77234 2.92549 3.19278 3.23782 3.25538 3.27991 3.52314 3.74306 3.94572 4.26561 4.41002 4.61249 4.82322 4.85961 4.91826 5.03792 5.07637 5.09374 5.16577 5.19785 5.26315 5.38646 5.41495 5.55392 5.70928 5.80175 5.92451 6.07292 6.25683 6.28172 6.45027 6.48846 6.64603 6.88960 7.02452 7.20445 7.38693 7.58953 7.75834 8.16541 8.34932 8.46636 8.92711 9.35676 10.94396 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.003795 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.555348 B = 7377.278130 C = 8356.754895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.382 6.382 4 C 0.065 3.935 5 C 0.099 3.901 6 H 0.141 0.859 7 C 0.527 3.473 8 O -0.424 6.424 9 N -0.484 5.484 10 C 0.254 3.746 11 C -0.274 4.274 12 C 0.056 3.944 13 N -0.315 5.315 14 C 0.231 3.769 15 C -0.534 4.534 16 H 0.086 0.914 17 C 0.077 3.923 18 N -0.886 5.886 19 Si 0.874 3.126 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.265 1.265 23 N -0.253 5.253 24 C 0.717 3.283 25 O -0.531 6.531 26 N -0.621 5.621 27 C 0.122 3.878 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.056 0.944 38 H 0.039 0.961 39 H 0.268 0.732 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.275 -7.490 -18.894 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.302 6.302 4 C -0.013 4.013 5 C -0.009 4.009 6 H 0.158 0.842 7 C 0.311 3.689 8 O -0.288 6.288 9 N -0.226 5.226 10 C 0.003 3.997 11 C -0.305 4.305 12 C -0.093 4.093 13 N -0.098 5.098 14 C 0.113 3.887 15 C -0.572 4.572 16 H 0.104 0.896 17 C -0.127 4.127 18 N -0.524 5.524 19 Si 0.700 3.300 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.190 1.190 23 N -0.083 5.083 24 C 0.419 3.581 25 O -0.403 6.403 26 N -0.361 5.361 27 C -0.019 4.019 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.175 0.825 36 H 0.192 0.808 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.128 -7.440 -17.269 21.850 hybrid contribution -0.165 0.734 -0.223 0.785 sum 10.963 -6.706 -17.492 21.705 Atomic orbital electron populations 1.21750 0.93398 1.02246 1.03706 1.22473 0.96023 0.82934 0.99955 1.88008 1.19434 1.27283 1.95426 1.22570 0.83503 0.92960 1.02312 1.22264 1.01550 0.93628 0.83480 0.84169 1.20571 0.79518 0.79765 0.89037 1.90904 1.60583 1.64502 1.12779 1.42746 1.40436 1.31559 1.07811 1.18725 0.95633 0.93907 0.91468 1.21188 1.05293 1.03138 1.00880 1.22510 1.00834 1.00972 0.84983 1.48852 1.28829 1.25027 1.07063 1.20117 0.95204 0.96384 0.77040 1.21105 1.41979 0.94762 0.99403 0.89554 1.24820 0.94481 0.97101 0.96262 1.69878 1.40978 1.30715 1.10795 0.86900 0.78527 0.84699 0.79858 1.19688 1.20594 1.18959 1.77721 1.10699 1.07868 1.11979 1.15440 0.80031 0.81511 0.81145 1.90916 1.52040 1.45077 1.52284 1.47352 1.46734 1.35136 1.06867 1.21494 0.99908 1.01590 0.78900 0.90995 0.91341 0.91881 0.93409 0.93033 0.91162 0.90496 0.82550 0.80832 0.92641 0.94276 0.92206 0.88990 0.91451 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 37.16 0.38 -1.26 16 2 C 0.06 0.63 6.66 37.16 0.25 0.87 16 3 O -0.38 -4.98 9.69 -35.23 -0.34 -5.32 16 4 C 0.06 0.60 5.78 37.16 0.21 0.81 16 5 C 0.10 1.07 3.86 -68.21 -0.26 0.81 16 6 H 0.14 0.98 8.14 -51.93 -0.42 0.55 16 7 C 0.53 9.14 7.04 -10.56 -0.07 9.07 16 8 O -0.42 -8.98 17.17 5.59 0.10 -8.89 16 9 N -0.48 -9.14 2.83 -65.79 -0.19 -9.33 16 10 C 0.25 5.61 7.68 -154.17 -1.18 4.43 16 11 C -0.27 -5.46 9.88 -39.84 -0.39 -5.86 16 12 C 0.06 1.09 11.44 -17.24 -0.20 0.89 16 13 N -0.32 -7.42 3.66 -62.56 -0.23 -7.65 16 14 C 0.23 5.63 5.33 -5.19 -0.03 5.60 16 15 C -0.53 -15.59 9.80 -34.44 -0.34 -15.92 16 16 H 0.09 2.89 8.06 -52.49 -0.42 2.46 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -27.21 13.96 55.43 0.77 -26.43 16 19 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 23 N -0.25 -6.36 11.58 31.48 0.36 -5.99 16 24 C 0.72 11.69 8.27 -88.02 -0.73 10.96 16 25 O -0.53 -9.63 14.93 5.34 0.08 -9.55 16 26 N -0.62 -7.06 3.11 -180.28 -0.56 -7.62 16 27 C 0.12 0.83 11.06 59.85 0.66 1.49 16 28 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.41 7.72 -51.93 -0.40 0.01 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.16 2.92 6.52 -52.49 -0.34 2.57 16 36 H 0.17 2.58 8.06 -52.48 -0.42 2.16 16 37 H 0.06 1.22 7.13 -51.93 -0.37 0.85 16 38 H 0.04 0.94 7.57 -51.93 -0.39 0.54 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.09 0.70 7.67 -51.93 -0.40 0.30 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.33 7.83 -51.92 -0.41 -0.07 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -38.53 361.70 -6.72 -45.25 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.71 Total: 0.20 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -1.80 Total: 14.02 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.16 Total: -57.03 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.17 Total: -23.76 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.53 -6.72 -45.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117195900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.898 kcal (2) G-P(sol) polarization free energy of solvation -38.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds