Wall clock time and date at job start Tue Mar 31 2020 13:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 120.00167 * 2 1 4 4 H 1.48499 * 109.47339 * 270.00426 * 3 2 1 5 5 H 1.48508 * 109.47003 * 30.00233 * 3 2 1 6 6 H 1.48497 * 109.47176 * 149.99948 * 3 2 1 7 7 C 1.38803 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99827 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99814 * 179.97438 * 7 2 1 10 10 C 1.80998 * 99.99926 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47282 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99907 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00034 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99871 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46973 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47045 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99889 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.46906 * 180.02562 * 17 16 15 19 19 C 1.52995 * 109.47085 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 0.97005 * 119.99558 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47547 * 59.99769 * 10 9 7 28 28 H 1.09000 * 109.47090 * 299.99917 * 10 9 7 29 29 H 0.96997 * 120.00376 * 0.02562 * 13 11 10 30 30 H 1.09004 * 109.46767 * 60.00877 * 14 13 11 31 31 H 1.09000 * 109.47358 * 300.00547 * 14 13 11 32 32 H 1.09004 * 109.46657 * 60.00811 * 15 14 13 33 33 H 1.09000 * 109.47526 * 300.00445 * 15 14 13 34 34 H 1.00898 * 110.99849 * 303.96096 * 16 15 14 35 35 H 1.08992 * 109.47488 * 60.00300 * 17 16 15 36 36 H 1.08999 * 109.46591 * 299.99929 * 17 16 15 37 37 H 1.08995 * 109.47671 * 59.99653 * 18 17 16 38 38 H 1.09004 * 109.46984 * 299.99669 * 18 17 16 39 39 H 1.09005 * 109.47610 * 59.99944 * 19 18 17 40 40 H 1.09000 * 109.47256 * 299.99285 * 19 18 17 41 41 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 42 42 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 45 45 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0465 -1.4000 5 1 1.4479 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3440 -2.2964 -0.0024 13 7 6.0456 -4.4948 -0.0030 14 6 7.4906 -4.7359 -0.0037 15 6 7.7562 -6.2427 -0.0034 16 7 9.2053 -6.4845 -0.0035 17 6 9.4988 -7.9239 -0.0038 18 6 11.0141 -8.1353 -0.0032 19 6 11.3198 -9.6344 -0.0029 20 6 12.8124 -9.8427 -0.0029 21 6 13.4970 -9.9380 1.1942 22 6 14.8660 -10.1296 1.1942 23 6 15.5503 -10.2265 -0.0030 24 6 14.8665 -10.1259 -1.2001 25 6 13.4968 -9.9389 -1.2001 26 1 -0.4850 0.8401 0.0004 27 1 3.6433 -3.4311 -0.8926 28 1 3.6440 -3.4322 0.8873 29 1 5.4290 -5.2436 -0.0036 30 1 7.9339 -4.2891 0.8863 31 1 7.9332 -4.2887 -0.8938 32 1 7.3129 -6.6899 -0.8932 33 1 7.3137 -6.6895 0.8869 34 1 9.6484 -6.0251 -0.7849 35 1 9.0680 -8.3824 -0.8938 36 1 9.0679 -8.3827 0.8861 37 1 11.4446 -7.6769 0.8870 38 1 11.4453 -7.6764 -0.8929 39 1 10.8893 -10.0933 -0.8930 40 1 10.8887 -10.0930 0.8870 41 1 12.9622 -9.8627 2.1296 42 1 15.4009 -10.2036 2.1295 43 1 16.6199 -10.3767 -0.0029 44 1 15.4017 -10.1972 -2.1354 45 1 12.9619 -9.8652 -2.1354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:28 Heat of formation + Delta-G solvation = -31.243062 kcal Electronic energy + Delta-G solvation = -22165.924444 eV Core-core repulsion = 18694.520832 eV Total energy + Delta-G solvation = -3471.403612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.76018 -39.30814 -37.40818 -35.21613 -33.80714 -32.43514 -31.31265 -31.10798 -29.71010 -27.65314 -25.62881 -25.10276 -23.00426 -22.44461 -22.19564 -21.15343 -20.46102 -17.88223 -17.24549 -16.75125 -16.39265 -16.14720 -15.80675 -15.59949 -15.25868 -14.97791 -14.77322 -14.54913 -14.30414 -13.83238 -13.77763 -13.58180 -13.36568 -13.16259 -12.91672 -12.79057 -12.29181 -12.23639 -11.95993 -11.83385 -11.60254 -11.46270 -11.26579 -11.18174 -11.07234 -11.00243 -10.60220 -9.85546 -9.54622 -9.34966 -9.11764 -9.02262 -8.96617 -8.87835 -8.49768 -6.91538 -6.28779 -4.00497 0.92169 0.97219 2.73422 2.97937 3.20795 3.33498 3.35709 3.51342 3.58672 3.98723 4.28102 4.33735 4.35880 4.55265 4.58845 4.65962 4.68948 4.74490 4.80045 4.90078 4.92970 4.98903 5.08467 5.10423 5.19087 5.20440 5.28253 5.30033 5.32072 5.58273 5.61735 5.69863 5.70740 5.77600 5.79099 5.87817 6.01184 6.04048 6.09590 6.20510 6.45982 6.56976 6.59996 6.93157 7.59377 7.94299 8.41653 8.48896 9.17524 10.80453 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.048121 B = 0.001333 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.731515 B =20994.091060 C =21242.784089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.123 3.877 15 C 0.049 3.951 16 N -0.687 5.687 17 C 0.060 3.940 18 C -0.112 4.112 19 C -0.080 4.080 20 C -0.079 4.079 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.399 0.601 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.344 0.656 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.215 -25.088 -0.723 37.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.319 5.319 17 C -0.069 4.069 18 C -0.150 4.150 19 C -0.118 4.118 20 C -0.080 4.080 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.137 4.137 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.233 0.767 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 28.390 -23.350 -0.034 36.759 hybrid contribution -1.290 -0.981 -0.971 1.890 sum 27.100 -24.331 -1.006 36.434 Atomic orbital electron populations 1.69945 1.05925 1.27763 1.48096 1.24710 0.94440 0.98959 0.93144 0.86735 0.81917 0.83264 0.79942 1.19205 1.19919 1.15906 1.22325 0.88292 0.97549 1.58795 0.89391 1.84800 1.09248 1.00055 1.97425 1.23277 0.93953 1.04407 1.05827 1.20270 0.90602 0.82197 0.75269 1.90708 1.58782 1.42168 1.47590 1.45859 1.07342 1.08143 1.77870 1.21158 0.81424 0.94615 1.03007 1.22095 0.88841 0.95760 1.01328 1.60314 1.09790 1.11298 1.50488 1.21983 0.96028 0.88125 1.00812 1.21540 0.95149 0.95003 1.03274 1.20580 0.91423 0.96722 1.03096 1.19894 0.95791 0.99070 0.93201 1.21095 0.94425 1.00296 0.97702 1.21176 0.94487 0.99831 0.98149 1.21167 0.99933 1.00713 0.92673 1.21166 0.94465 0.99917 0.98141 1.21074 0.94423 1.00538 0.97633 0.91945 0.88500 0.88409 0.76739 0.90619 0.91774 0.94513 0.90238 0.83788 0.95076 0.90765 0.90687 0.91805 0.90987 0.90737 0.86014 0.86088 0.86202 0.86130 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 10 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 11 C 0.53 9.46 7.85 -10.99 -0.09 9.37 16 12 O -0.52 -11.33 15.86 5.55 0.09 -11.24 16 13 N -0.74 -9.25 5.56 -60.29 -0.33 -9.58 16 14 C 0.12 1.36 5.93 -4.04 -0.02 1.33 16 15 C 0.05 0.39 5.80 -3.82 -0.02 0.37 16 16 N -0.69 -5.24 6.50 -113.78 -0.74 -5.98 16 17 C 0.06 0.36 5.68 -3.82 -0.02 0.34 16 18 C -0.11 -0.64 5.46 -26.74 -0.15 -0.79 16 19 C -0.08 -0.41 5.34 -27.88 -0.15 -0.56 16 20 C -0.08 -0.52 5.13 -104.62 -0.54 -1.05 16 21 C -0.12 -0.76 9.70 -39.58 -0.38 -1.15 16 22 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 23 C -0.13 -0.77 10.05 -39.58 -0.40 -1.17 16 24 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 25 C -0.12 -0.76 9.70 -39.58 -0.38 -1.15 16 26 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 28 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 29 H 0.40 3.77 8.47 -40.82 -0.35 3.43 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.34 2.42 8.73 -39.29 -0.34 2.08 16 35 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 40 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 41 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -34.52 393.00 -10.96 -45.47 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.45 Total: 0.63 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.51 Total: -10.93 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.30 Total: -41.39 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.52 -10.96 -45.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.232 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds