Wall clock time and date at job start Tue Mar 31 2020 13:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42895 * 109.47152 * 135.02384 * 3 2 1 5 5 C 1.35906 * 117.00153 * 179.97438 * 4 3 2 6 6 C 1.38732 * 120.05860 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94727 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.05414 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.94509 * 179.97438 * 8 7 6 10 10 N 1.46504 * 109.46800 * 94.91811 * 9 8 7 11 11 C 1.36936 * 120.00067 * 95.45699 * 10 9 8 12 12 H 1.08000 * 119.99965 * 220.06844 * 11 10 9 13 13 C 1.38806 * 120.00195 * 40.06446 * 11 10 9 14 14 N 1.31621 * 120.00292 * 211.89000 * 13 11 10 15 15 Si 1.86800 * 119.99887 * 31.88438 * 13 11 10 16 16 H 1.48504 * 109.47138 * 93.81671 * 15 13 11 17 17 H 1.48504 * 109.47433 * 213.81446 * 15 13 11 18 18 H 1.48500 * 109.47290 * 333.81513 * 15 13 11 19 19 C 1.46501 * 119.99856 * 275.73043 * 10 9 8 20 20 C 1.50701 * 109.47226 * 263.75929 * 19 10 9 21 21 C 1.38235 * 120.00103 * 267.63975 * 20 19 10 22 22 C 1.38234 * 119.99656 * 179.76543 * 21 20 19 23 23 C 1.38236 * 120.00446 * 0.50381 * 22 21 20 24 24 C 1.38241 * 119.99633 * 359.74659 * 23 22 21 25 25 C 1.38234 * 119.99839 * 359.97438 * 24 23 22 26 26 C 1.38266 * 120.11350 * 0.25047 * 8 7 6 27 27 C 1.38142 * 120.05056 * 359.45638 * 26 8 7 28 28 H 1.09003 * 109.47624 * 15.02194 * 3 2 1 29 29 H 1.09007 * 109.47402 * 255.02654 * 3 2 1 30 30 H 1.08004 * 120.02435 * 359.97438 * 6 5 4 31 31 H 1.07998 * 119.97233 * 179.97438 * 7 6 5 32 32 H 1.08996 * 109.47217 * 334.92205 * 9 8 7 33 33 H 1.09002 * 109.47474 * 214.91557 * 9 8 7 34 34 H 0.97000 * 120.00025 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.47210 * 23.75551 * 19 10 9 36 36 H 1.08996 * 109.47339 * 143.75727 * 19 10 9 37 37 H 1.07992 * 119.99748 * 359.97438 * 21 20 19 38 38 H 1.08007 * 119.99792 * 180.22763 * 22 21 20 39 39 H 1.07997 * 119.99987 * 179.73116 * 23 22 21 40 40 H 1.07997 * 119.99766 * 179.97438 * 24 23 22 41 41 H 1.08002 * 119.99630 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.97460 * 179.69753 * 26 8 7 43 43 H 1.08006 * 120.02796 * 180.24781 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 8 3.0838 0.9539 -0.9522 5 6 4.4311 1.0809 -1.0777 6 6 4.9623 1.9880 -1.9831 7 6 6.3320 2.1148 -2.1091 8 6 7.1736 1.3382 -1.3343 9 6 8.6675 1.4781 -1.4742 10 7 9.1673 2.4124 -0.4625 11 6 9.6603 1.9379 0.7236 12 1 9.4375 2.4537 1.6460 13 6 10.4464 0.7940 0.7406 14 7 10.4115 -0.0132 1.7797 15 14 11.5535 0.4000 -0.7114 16 1 12.9135 0.9399 -0.4578 17 1 11.6309 -1.0723 -0.8898 18 1 10.9965 1.0189 -1.9410 19 6 9.1341 3.8547 -0.7174 20 6 10.4753 4.3039 -1.2374 21 6 11.4390 4.7626 -0.3589 22 6 12.6709 5.1701 -0.8355 23 6 12.9356 5.1288 -2.1917 24 6 11.9700 4.6749 -3.0707 25 6 10.7401 4.2620 -2.5936 26 6 6.6468 0.4292 -0.4353 27 6 5.2777 0.3030 -0.3012 28 1 2.9718 -0.9917 -0.2664 29 1 2.9712 0.2664 0.9928 30 1 4.3053 2.5940 -2.5894 31 1 6.7459 2.8206 -2.8141 32 1 8.9054 1.8573 -2.4680 33 1 9.1383 0.5050 -1.3343 34 1 10.9611 -0.8123 1.7917 35 1 8.3650 4.0753 -1.4577 36 1 8.9084 4.3823 0.2092 37 1 11.2305 4.7994 0.7001 38 1 13.4251 5.5251 -0.1487 39 1 13.8965 5.4512 -2.5644 40 1 12.1766 4.6430 -4.1303 41 1 9.9857 3.9078 -3.2804 42 1 7.3062 -0.1797 0.1653 43 1 4.8666 -0.4042 0.4040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137120534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:41 Heat of formation + Delta-G solvation = 58.920638 kcal Electronic energy + Delta-G solvation = -25842.696271 eV Core-core repulsion = 22239.758499 eV Total energy + Delta-G solvation = -3602.937772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11647 -40.05752 -38.96879 -37.59235 -36.92615 -33.95277 -32.76172 -31.85146 -31.61868 -31.14532 -29.56897 -27.46451 -26.83364 -23.72883 -23.60968 -23.27866 -22.23582 -21.46454 -19.24038 -19.16523 -18.72898 -17.60724 -17.16898 -16.97470 -16.41485 -16.22089 -15.92524 -15.81519 -15.70783 -15.17140 -14.79886 -14.70404 -14.55641 -14.32948 -14.13963 -14.12014 -14.05579 -13.79906 -13.37130 -13.21433 -13.15566 -12.96931 -12.80100 -12.32737 -12.23770 -12.06954 -11.93679 -11.82505 -11.64030 -11.56618 -11.38816 -10.56720 -9.74364 -9.65995 -9.49276 -8.94156 -8.65949 -8.21111 -5.46911 0.55155 0.60822 0.65991 0.70002 1.11150 1.35172 1.47156 1.54644 1.60270 2.40218 2.47330 2.86012 3.03359 3.12141 3.17830 3.79036 3.99015 4.08588 4.13247 4.18492 4.24759 4.26652 4.29356 4.35267 4.40452 4.49357 4.59639 4.65660 4.77814 4.80346 4.92310 4.95498 5.02413 5.14215 5.30729 5.31205 5.33142 5.45833 5.60746 5.71686 5.74296 5.89671 5.93412 5.99495 6.04541 6.27212 6.31149 6.31895 6.49454 7.06681 7.69571 8.15267 8.98319 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.003269 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.511060 B = 8563.717529 C = 9552.850263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.241 3.759 3 C 0.153 3.847 4 O -0.323 6.323 5 C 0.117 3.883 6 C -0.152 4.152 7 C -0.076 4.076 8 C -0.130 4.130 9 C 0.186 3.814 10 N -0.590 5.590 11 C -0.246 4.246 12 H 0.038 0.962 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.895 3.105 16 H -0.308 1.308 17 H -0.302 1.302 18 H -0.238 1.238 19 C 0.182 3.818 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.126 4.126 26 C -0.074 4.074 27 C -0.201 4.201 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 4.713 -9.462 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.077 4.077 3 C 0.076 3.924 4 O -0.236 6.236 5 C 0.073 3.927 6 C -0.170 4.170 7 C -0.095 4.095 8 C -0.133 4.133 9 C 0.061 3.939 10 N -0.311 5.311 11 C -0.376 4.376 12 H 0.056 0.944 13 C -0.186 4.186 14 N -0.566 5.566 15 Si 0.723 3.277 16 H -0.237 1.237 17 H -0.230 1.230 18 H -0.161 1.161 19 C 0.057 3.943 20 C -0.101 4.101 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.093 4.093 27 C -0.220 4.220 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.125 0.875 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.119 0.881 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.449 4.672 -9.482 12.931 hybrid contribution 1.621 -0.747 0.306 1.810 sum -5.828 3.925 -9.176 11.558 Atomic orbital electron populations 1.81261 1.14157 1.09110 1.09128 1.28779 0.94565 0.92185 0.92172 1.20162 0.80026 0.96168 0.96061 1.85974 1.19955 1.58864 1.58801 1.18769 0.80658 0.96640 0.96661 1.20540 0.95052 1.00629 1.00793 1.20968 0.91950 0.98060 0.98500 1.20724 0.97480 0.97315 0.97735 1.20127 0.88636 0.93226 0.91906 1.44147 1.69604 1.00888 1.16443 1.18378 1.25075 1.09044 0.85057 0.94403 1.25808 0.98547 0.97059 0.97188 1.70099 1.40197 1.12357 1.33933 0.86557 0.80850 0.75719 0.84576 1.23677 1.22990 1.16084 1.20031 0.91656 0.83907 0.98712 1.20954 0.99045 0.96158 0.93950 1.21164 0.94385 0.99324 0.99390 1.21379 0.96804 1.00662 0.96580 1.21369 1.00171 1.01064 0.93215 1.21420 0.93542 0.99300 1.00645 1.21234 0.98084 1.00311 0.94847 1.20886 0.94865 0.97348 0.96195 1.21378 0.93329 1.03791 1.03468 0.84177 0.84697 0.83815 0.83923 0.91882 0.94440 0.92998 0.90319 0.93680 0.87530 0.85226 0.84171 0.84018 0.85195 0.88123 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.19 18.54 20.00 0.37 -10.82 16 2 C 0.24 4.38 15.82 89.44 1.41 5.80 16 3 C 0.15 1.93 5.21 70.18 0.37 2.29 16 4 O -0.32 -6.40 10.09 -92.49 -0.93 -7.34 16 5 C 0.12 2.74 6.69 22.51 0.15 2.89 16 6 C -0.15 -3.59 9.99 22.36 0.22 -3.37 16 7 C -0.08 -1.99 9.67 22.25 0.22 -1.78 16 8 C -0.13 -4.28 5.46 -19.85 -0.11 -4.39 16 9 C 0.19 7.02 3.97 85.63 0.34 7.36 16 10 N -0.59 -24.78 1.98 -710.69 -1.41 -26.19 16 11 C -0.25 -12.72 9.76 84.03 0.82 -11.90 16 12 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 13 C 0.01 0.70 5.01 84.86 0.43 1.12 16 14 N -0.92 -53.85 13.97 21.65 0.30 -53.54 16 15 Si 0.89 43.47 26.39 68.60 1.81 45.28 16 16 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 17 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 18 H -0.24 -10.57 5.89 99.48 0.59 -9.99 16 19 C 0.18 6.47 5.83 85.63 0.50 6.97 16 20 C -0.10 -3.43 5.42 -19.87 -0.11 -3.54 16 21 C -0.12 -4.41 9.69 22.27 0.22 -4.20 16 22 C -0.14 -4.22 10.05 22.27 0.22 -3.99 16 23 C -0.14 -3.83 10.05 22.27 0.22 -3.61 16 24 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 25 C -0.13 -3.82 9.71 22.27 0.22 -3.61 16 26 C -0.07 -2.47 9.71 22.25 0.22 -2.25 16 27 C -0.20 -5.04 9.04 22.37 0.20 -4.84 16 28 H 0.14 1.00 7.66 -2.39 -0.02 0.98 16 29 H 0.14 1.15 7.66 -2.38 -0.02 1.13 16 30 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.06 2.10 8.01 -2.39 -0.02 2.08 16 33 H 0.04 1.60 4.82 -2.39 -0.01 1.59 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.08 2.34 7.98 -2.39 -0.02 2.32 16 36 H 0.04 1.68 8.01 -2.39 -0.02 1.66 16 37 H 0.11 3.96 8.06 -2.91 -0.02 3.93 16 38 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 42 H 0.10 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.15 2.76 6.30 -2.91 -0.02 2.74 16 Total: -1.00 -68.13 373.47 6.80 -61.33 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.89 Total: 15.65 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 5.76 Total: -24.37 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -0.73 Total: -90.55 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.93 Total: -7.34 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.81 Total: 45.28 kcal Total: -68.13 6.80 -61.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137120534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.254 kcal (2) G-P(sol) polarization free energy of solvation -68.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds