Wall clock time and date at job start Tue Mar 31 2020 13:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00311 * 2 1 4 4 H 1.48503 * 109.46754 * 240.00043 * 3 2 1 5 5 H 1.48501 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46969 * 120.00062 * 3 2 1 7 7 C 1.38819 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99375 * 207.35786 * 7 2 1 9 9 N 1.36930 * 120.00182 * 27.35492 * 7 2 1 10 10 C 1.46496 * 119.99818 * 158.15345 * 9 7 2 11 11 C 1.50708 * 109.47261 * 259.83820 * 10 9 7 12 12 C 1.34204 * 126.50329 * 261.48125 * 11 10 9 13 13 N 1.36937 * 109.88238 * 179.80910 * 12 11 10 14 14 H 0.97004 * 125.06356 * 180.27354 * 13 12 11 15 15 C 1.37688 * 109.86745 * 0.37868 * 13 12 11 16 16 C 1.39222 * 133.37703 * 179.97438 * 15 13 12 17 17 C 1.37715 * 120.02231 * 179.68450 * 16 15 13 18 18 C 1.38794 * 120.72363 * 0.02562 * 17 16 15 19 19 C 1.38128 * 120.31371 * 359.95876 * 18 17 16 20 20 O 1.35880 * 120.22006 * 180.02562 * 19 18 17 21 21 C 1.40061 * 119.55565 * 0.04732 * 19 18 17 22 22 C 1.46506 * 119.99980 * 338.15683 * 9 7 2 23 23 C 1.50694 * 109.46966 * 277.19607 * 22 9 7 24 24 C 1.38238 * 120.00384 * 279.26369 * 23 22 9 25 25 C 1.38235 * 120.00210 * 179.76247 * 24 23 22 26 26 C 1.38236 * 119.99768 * 0.51648 * 25 24 23 27 27 C 1.38233 * 120.00001 * 359.73468 * 26 25 24 28 28 C 1.38236 * 120.00275 * 0.02562 * 27 26 25 29 29 H 0.97002 * 119.99666 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46917 * 139.84438 * 10 9 7 31 31 H 1.09001 * 109.47420 * 19.84223 * 10 9 7 32 32 H 1.07997 * 125.06104 * 0.03747 * 12 11 10 33 33 H 1.07991 * 119.98478 * 359.65180 * 16 15 13 34 34 H 1.08001 * 119.63808 * 179.97438 * 17 16 15 35 35 H 1.07997 * 119.84229 * 179.97438 * 18 17 16 36 36 H 0.96700 * 113.99597 * 84.01943 * 20 19 18 37 37 H 1.09000 * 109.46870 * 37.19692 * 22 9 7 38 38 H 1.09000 * 109.46842 * 157.19838 * 22 9 7 39 39 H 1.07999 * 119.99565 * 0.02562 * 24 23 22 40 40 H 1.07998 * 119.99907 * 180.23201 * 25 24 23 41 41 H 1.07999 * 119.99378 * 179.72100 * 26 25 24 42 42 H 1.07996 * 119.99693 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.00147 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 2.9996 -1.2543 0.4304 9 7 1.4403 -2.3220 -0.5439 10 6 2.2861 -3.4344 -0.9836 11 6 2.4633 -3.3702 -2.4788 12 6 1.7814 -4.0757 -3.3945 13 7 2.2144 -3.7482 -4.6517 14 1 1.8682 -4.1247 -5.4760 15 6 3.2159 -2.8068 -4.5713 16 6 3.9859 -2.1461 -5.5246 17 6 4.9326 -1.2273 -5.1294 18 6 5.1322 -0.9486 -3.7845 19 6 4.3802 -1.5911 -2.8203 20 8 4.5769 -1.3164 -1.5041 21 6 3.4141 -2.5279 -3.2083 22 6 -0.0153 -2.4076 -0.6866 23 6 -0.6228 -2.8518 0.6190 24 6 -0.6264 -4.1916 0.9593 25 6 -1.1793 -4.5985 2.1592 26 6 -1.7381 -3.6668 3.0139 27 6 -1.7391 -2.3276 2.6712 28 6 -1.1818 -1.9201 1.4736 29 1 -0.4850 0.8401 -0.0004 30 1 1.8134 -4.3789 -0.7140 31 1 3.2599 -3.3640 -0.4989 32 1 1.0041 -4.7920 -3.1731 33 1 3.8410 -2.3546 -6.5743 34 1 5.5267 -0.7187 -5.8742 35 1 5.8788 -0.2258 -3.4905 36 1 4.0980 -0.5376 -1.1891 37 1 -0.4119 -1.4292 -0.9577 38 1 -0.2621 -3.1285 -1.4661 39 1 -0.1935 -4.9200 0.2897 40 1 -1.1787 -5.6448 2.4267 41 1 -2.1740 -3.9853 3.9492 42 1 -2.1761 -1.5998 3.3388 43 1 -1.1830 -0.8739 1.2057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140234522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:46 Heat of formation + Delta-G solvation = 81.807184 kcal Electronic energy + Delta-G solvation = -27306.043393 eV Core-core repulsion = 23704.098056 eV Total energy + Delta-G solvation = -3601.945337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81352 -38.22141 -37.53529 -35.88813 -35.03876 -32.18583 -30.95723 -30.01375 -29.71843 -28.88783 -28.09271 -25.49100 -25.33857 -22.31248 -21.89199 -21.52548 -21.42788 -19.95794 -19.05300 -17.83148 -17.00631 -16.53876 -15.64052 -15.52596 -15.21681 -14.78860 -14.27858 -14.21234 -14.14929 -13.91053 -13.58609 -13.36907 -13.21605 -12.77618 -12.36807 -12.33158 -12.01892 -11.72465 -11.56847 -11.42628 -11.20002 -11.07851 -10.84738 -10.62817 -10.42186 -10.25593 -10.21388 -9.92548 -9.76770 -9.45858 -8.88409 -8.32116 -7.89846 -7.83604 -7.61791 -7.12001 -6.88594 -5.80314 -3.17024 1.49011 1.98050 2.37899 2.48814 3.18470 3.33106 3.37535 3.42360 3.51042 4.17096 4.42431 4.85311 4.91242 5.16368 5.17401 5.29480 5.49454 5.54873 5.72373 5.79155 5.82583 5.86538 5.93335 5.94983 6.13030 6.21925 6.30450 6.37003 6.55282 6.65577 6.69218 6.78508 6.83604 6.84699 6.95907 7.04925 7.10285 7.20258 7.31365 7.41771 7.52127 7.59856 7.82170 7.91625 7.94579 8.04561 8.18406 8.39723 8.52109 9.20155 9.81038 10.29522 11.09500 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.005158 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.281694 B = 5426.654752 C = 6872.426587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.007 3.993 3 Si 0.873 3.127 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.581 5.581 10 C 0.215 3.785 11 C -0.136 4.136 12 C 0.022 3.978 13 N -0.601 5.601 14 H 0.409 0.591 15 C 0.109 3.891 16 C -0.157 4.157 17 C -0.085 4.085 18 C -0.201 4.201 19 C 0.182 3.818 20 O -0.494 6.494 21 C -0.114 4.114 22 C 0.159 3.841 23 C -0.057 4.057 24 C -0.131 4.131 25 C -0.145 4.145 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.086 4.086 29 H 0.254 0.746 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.397 0.603 37 H 0.141 0.859 38 H 0.013 0.987 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 -5.502 -6.967 9.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.188 4.188 3 Si 0.701 3.299 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.357 4.357 8 H 0.099 0.901 9 N -0.300 5.300 10 C 0.088 3.912 11 C -0.145 4.145 12 C -0.102 4.102 13 N -0.204 5.204 14 H 0.244 0.756 15 C 0.001 3.999 16 C -0.178 4.178 17 C -0.105 4.105 18 C -0.221 4.221 19 C 0.137 3.863 20 O -0.308 6.308 21 C -0.119 4.119 22 C 0.034 3.966 23 C -0.059 4.059 24 C -0.150 4.150 25 C -0.163 4.163 26 C -0.166 4.166 27 C -0.166 4.166 28 C -0.104 4.104 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.179 0.821 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.258 0.742 37 H 0.157 0.843 38 H 0.032 0.968 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.962 -5.901 -7.009 9.370 hybrid contribution -0.062 0.961 -0.179 0.979 sum 1.900 -4.940 -7.188 8.927 Atomic orbital electron populations 1.69457 1.05218 1.24535 1.54203 1.24994 0.95224 0.97375 1.01217 0.86790 0.80069 0.84906 0.78093 1.21144 1.21473 1.20836 1.19327 1.00302 0.85720 1.30358 0.90117 1.44021 1.00446 1.16160 1.69339 1.19195 0.95369 0.90395 0.86242 1.21557 0.97131 0.97803 0.98018 1.21567 1.02261 1.03765 0.82651 1.41673 1.33211 1.37607 1.07934 0.75569 1.18097 0.92904 0.94127 0.94797 1.19833 0.99691 1.01213 0.97063 1.20487 0.97461 0.97291 0.95221 1.21103 1.04009 1.04214 0.92747 1.17926 0.91696 0.92913 0.83802 1.84672 1.72043 1.52887 1.21219 1.19323 0.98926 1.01665 0.92007 1.21254 0.82906 1.03444 0.88994 1.20951 0.93778 0.91367 0.99833 1.21050 1.00835 0.96464 0.96609 1.20831 1.01739 0.98049 0.95717 1.20857 1.02585 0.94026 0.99085 1.21231 1.02046 0.94990 0.98302 1.22430 0.92531 1.03899 0.91534 0.93446 0.94459 0.91665 0.82110 0.86921 0.86149 0.86110 0.74227 0.84263 0.96823 0.88174 0.88179 0.88250 0.88002 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.95 6.41 55.49 0.36 -21.59 16 2 C 0.01 0.16 5.35 -17.43 -0.09 0.07 16 3 Si 0.87 19.45 28.63 -169.99 -4.87 14.58 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.23 -5.54 7.84 -15.06 -0.12 -5.66 16 8 H 0.08 1.98 6.94 -52.48 -0.36 1.61 16 9 N -0.58 -13.10 2.53 -175.98 -0.45 -13.55 16 10 C 0.22 4.33 5.94 -5.19 -0.03 4.30 16 11 C -0.14 -2.56 5.84 -102.72 -0.60 -3.16 16 12 C 0.02 0.35 11.74 -16.69 -0.20 0.15 16 13 N -0.60 -8.52 6.07 -10.65 -0.06 -8.58 16 14 H 0.41 4.24 8.96 -40.82 -0.37 3.88 16 15 C 0.11 1.81 7.27 -84.01 -0.61 1.20 16 16 C -0.16 -2.29 10.06 -39.41 -0.40 -2.68 16 17 C -0.09 -1.23 10.01 -39.57 -0.40 -1.63 16 18 C -0.20 -3.34 9.97 -39.42 -0.39 -3.73 16 19 C 0.18 3.52 6.74 -38.94 -0.26 3.26 16 20 O -0.49 -9.92 11.97 -19.36 -0.23 -10.15 16 21 C -0.11 -2.19 6.30 -105.03 -0.66 -2.86 16 22 C 0.16 3.56 5.31 -5.19 -0.03 3.53 16 23 C -0.06 -1.24 5.40 -104.62 -0.57 -1.80 16 24 C -0.13 -2.58 9.74 -39.58 -0.39 -2.97 16 25 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 26 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 27 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 28 C -0.09 -1.90 9.19 -39.58 -0.36 -2.26 16 29 H 0.25 6.21 8.31 -40.82 -0.34 5.87 16 30 H 0.04 0.70 7.79 -51.93 -0.40 0.29 16 31 H 0.06 1.38 7.57 -51.93 -0.39 0.99 16 32 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 33 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 36 H 0.40 7.96 6.19 45.56 0.28 8.24 16 37 H 0.14 3.49 4.84 -55.30 -0.27 3.22 16 38 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 39 H 0.10 1.82 7.71 -52.49 -0.40 1.41 16 40 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 42 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.17 4.01 4.98 -52.49 -0.26 3.75 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -27.22 351.48 -10.94 -38.16 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -4.69 Total: 19.53 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -6.29 Total: -23.70 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.15 Total: -43.72 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.23 Total: -10.15 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.87 Total: 14.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.22 -10.94 -38.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140234522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.970 kcal (2) G-P(sol) polarization free energy of solvation -27.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds