Wall clock time and date at job start Tue Mar 31 2020 13:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00311 * 2 1 4 4 H 1.48503 * 109.46754 * 240.00043 * 3 2 1 5 5 H 1.48501 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46969 * 120.00062 * 3 2 1 7 7 C 1.38819 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99375 * 207.35786 * 7 2 1 9 9 N 1.36930 * 120.00182 * 27.35492 * 7 2 1 10 10 C 1.46496 * 119.99818 * 158.15345 * 9 7 2 11 11 C 1.50708 * 109.47261 * 259.83820 * 10 9 7 12 12 C 1.34204 * 126.50329 * 261.48125 * 11 10 9 13 13 N 1.36937 * 109.88238 * 179.80910 * 12 11 10 14 14 H 0.97004 * 125.06356 * 180.27354 * 13 12 11 15 15 C 1.37688 * 109.86745 * 0.37868 * 13 12 11 16 16 C 1.39222 * 133.37703 * 179.97438 * 15 13 12 17 17 C 1.37715 * 120.02231 * 179.68450 * 16 15 13 18 18 C 1.38794 * 120.72363 * 0.02562 * 17 16 15 19 19 C 1.38128 * 120.31371 * 359.95876 * 18 17 16 20 20 O 1.35880 * 120.22006 * 180.02562 * 19 18 17 21 21 C 1.40061 * 119.55565 * 0.04732 * 19 18 17 22 22 C 1.46506 * 119.99980 * 338.15683 * 9 7 2 23 23 C 1.50694 * 109.46966 * 277.19607 * 22 9 7 24 24 C 1.38238 * 120.00384 * 279.26369 * 23 22 9 25 25 C 1.38235 * 120.00210 * 179.76247 * 24 23 22 26 26 C 1.38236 * 119.99768 * 0.51648 * 25 24 23 27 27 C 1.38233 * 120.00001 * 359.73468 * 26 25 24 28 28 C 1.38236 * 120.00275 * 0.02562 * 27 26 25 29 29 H 0.97002 * 119.99666 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46917 * 139.84438 * 10 9 7 31 31 H 1.09001 * 109.47420 * 19.84223 * 10 9 7 32 32 H 1.07997 * 125.06104 * 0.03747 * 12 11 10 33 33 H 1.07991 * 119.98478 * 359.65180 * 16 15 13 34 34 H 1.08001 * 119.63808 * 179.97438 * 17 16 15 35 35 H 1.07997 * 119.84229 * 179.97438 * 18 17 16 36 36 H 0.96700 * 113.99597 * 84.01943 * 20 19 18 37 37 H 1.09000 * 109.46870 * 37.19692 * 22 9 7 38 38 H 1.09000 * 109.46842 * 157.19838 * 22 9 7 39 39 H 1.07999 * 119.99565 * 0.02562 * 24 23 22 40 40 H 1.07998 * 119.99907 * 180.23201 * 25 24 23 41 41 H 1.07999 * 119.99378 * 179.72100 * 26 25 24 42 42 H 1.07996 * 119.99693 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.00147 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 2.9996 -1.2543 0.4304 9 7 1.4403 -2.3220 -0.5439 10 6 2.2861 -3.4344 -0.9836 11 6 2.4633 -3.3702 -2.4788 12 6 1.7814 -4.0757 -3.3945 13 7 2.2144 -3.7482 -4.6517 14 1 1.8682 -4.1247 -5.4760 15 6 3.2159 -2.8068 -4.5713 16 6 3.9859 -2.1461 -5.5246 17 6 4.9326 -1.2273 -5.1294 18 6 5.1322 -0.9486 -3.7845 19 6 4.3802 -1.5911 -2.8203 20 8 4.5769 -1.3164 -1.5041 21 6 3.4141 -2.5279 -3.2083 22 6 -0.0153 -2.4076 -0.6866 23 6 -0.6228 -2.8518 0.6190 24 6 -0.6264 -4.1916 0.9593 25 6 -1.1793 -4.5985 2.1592 26 6 -1.7381 -3.6668 3.0139 27 6 -1.7391 -2.3276 2.6712 28 6 -1.1818 -1.9201 1.4736 29 1 -0.4850 0.8401 -0.0004 30 1 1.8134 -4.3789 -0.7140 31 1 3.2599 -3.3640 -0.4989 32 1 1.0041 -4.7920 -3.1731 33 1 3.8410 -2.3546 -6.5743 34 1 5.5267 -0.7187 -5.8742 35 1 5.8788 -0.2258 -3.4905 36 1 4.0980 -0.5376 -1.1891 37 1 -0.4119 -1.4292 -0.9577 38 1 -0.2621 -3.1285 -1.4661 39 1 -0.1935 -4.9200 0.2897 40 1 -1.1787 -5.6448 2.4267 41 1 -2.1740 -3.9853 3.9492 42 1 -2.1761 -1.5998 3.3388 43 1 -1.1830 -0.8739 1.2057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140234522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:45 Heat of formation + Delta-G solvation = 68.450901 kcal Electronic energy + Delta-G solvation = -27306.622565 eV Core-core repulsion = 23704.098056 eV Total energy + Delta-G solvation = -3602.524509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.06634 -39.77481 -38.89453 -37.45675 -36.43365 -33.82555 -32.53145 -31.50337 -31.25068 -30.12876 -29.46147 -27.22056 -26.88582 -23.57974 -23.53787 -22.97597 -22.74581 -21.53118 -20.44184 -19.23653 -18.72218 -17.83157 -17.04142 -16.98169 -16.75195 -16.23380 -15.77887 -15.62474 -15.59084 -15.40896 -15.06061 -14.98449 -14.69220 -14.31937 -13.88579 -13.65419 -13.38610 -13.21383 -13.11756 -12.96547 -12.88527 -12.50794 -12.36060 -12.17831 -11.99791 -11.91838 -11.87539 -11.49763 -11.24430 -11.14972 -10.25655 -10.14062 -9.43346 -9.18904 -9.08102 -8.74118 -8.29999 -7.64301 -5.01694 0.21919 0.72409 0.84347 0.95420 1.48605 1.54230 1.54992 1.89551 2.37027 2.58171 2.87599 3.23381 3.34644 3.58675 3.98675 4.12671 4.17962 4.29416 4.34618 4.36892 4.38757 4.52121 4.56351 4.64111 4.73563 4.89036 4.94977 5.01253 5.01484 5.06560 5.20827 5.27568 5.34064 5.51985 5.59605 5.64754 5.68570 5.80440 5.82024 5.88911 5.96639 6.09955 6.15397 6.23115 6.38789 6.54016 6.77033 6.86144 6.94378 7.35052 8.03568 8.47825 9.21475 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.005158 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.281694 B = 5426.654752 C = 6872.426587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.030 4.030 3 Si 0.918 3.082 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.227 4.227 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.224 3.776 11 C -0.182 4.182 12 C 0.047 3.953 13 N -0.583 5.583 14 H 0.430 0.570 15 C 0.095 3.905 16 C -0.145 4.145 17 C -0.087 4.087 18 C -0.202 4.202 19 C 0.134 3.866 20 O -0.506 6.506 21 C -0.146 4.146 22 C 0.166 3.834 23 C -0.077 4.077 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.155 4.155 28 C -0.115 4.115 29 H 0.247 0.753 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.192 0.808 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.131 0.869 36 H 0.388 0.612 37 H 0.113 0.887 38 H 0.023 0.977 39 H 0.115 0.885 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -7.357 -8.590 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.224 4.224 3 Si 0.748 3.252 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.098 3.902 11 C -0.191 4.191 12 C -0.079 4.079 13 N -0.188 5.188 14 H 0.270 0.730 15 C -0.013 4.013 16 C -0.166 4.166 17 C -0.106 4.106 18 C -0.222 4.222 19 C 0.089 3.911 20 O -0.319 6.319 21 C -0.151 4.151 22 C 0.042 3.958 23 C -0.079 4.079 24 C -0.156 4.156 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.174 4.174 28 C -0.133 4.133 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.209 0.791 33 H 0.169 0.831 34 H 0.177 0.823 35 H 0.149 0.851 36 H 0.247 0.753 37 H 0.130 0.870 38 H 0.041 0.959 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.135 0.865 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.723 -7.786 -8.680 11.787 hybrid contribution 0.027 1.453 0.271 1.479 sum 1.750 -6.333 -8.409 10.671 Atomic orbital electron populations 1.69690 1.05482 1.24050 1.55000 1.25391 0.95804 0.98946 1.02223 0.86079 0.78822 0.82473 0.77820 1.20848 1.22573 1.21231 1.19294 0.99650 0.86647 1.29986 0.91328 1.44109 1.00791 1.16322 1.69584 1.19046 0.93750 0.89932 0.87469 1.21392 0.99633 1.00502 0.97528 1.21917 1.01050 1.02352 0.82580 1.41619 1.32179 1.36609 1.08411 0.73033 1.18385 0.93818 0.94938 0.94173 1.20315 0.98104 0.99605 0.98555 1.20942 0.97628 0.97175 0.94843 1.21392 1.03468 1.03785 0.93569 1.18362 0.93959 0.95036 0.83726 1.84672 1.72006 1.52587 1.22604 1.19655 0.99492 1.02230 0.93769 1.20957 0.82784 1.02174 0.89913 1.20930 0.94806 0.92543 0.99662 1.21226 1.00961 0.95704 0.97710 1.21236 1.00190 0.99862 0.94737 1.21243 1.01659 0.93161 1.00236 1.21442 1.01779 0.96494 0.97644 1.22328 0.94623 1.03142 0.93215 0.94238 0.93274 0.94066 0.79083 0.83077 0.82320 0.85103 0.75285 0.87026 0.95894 0.86713 0.84773 0.84878 0.86484 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.43 6.41 21.65 0.14 -46.29 16 2 C -0.03 -1.55 5.35 84.86 0.45 -1.10 16 3 Si 0.92 41.95 28.63 68.60 1.96 43.91 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.23 -11.51 7.84 84.04 0.66 -10.85 16 8 H 0.07 3.58 6.94 -2.91 -0.02 3.56 16 9 N -0.59 -27.45 2.53 -710.67 -1.80 -29.25 16 10 C 0.22 9.27 5.94 85.64 0.51 9.78 16 11 C -0.18 -6.86 5.84 -18.63 -0.11 -6.97 16 12 C 0.05 1.40 11.74 82.98 0.97 2.37 16 13 N -0.58 -14.92 6.07 -187.59 -1.14 -16.06 16 14 H 0.43 7.28 8.96 -92.71 -0.83 6.45 16 15 C 0.10 2.98 7.27 39.02 0.28 3.27 16 16 C -0.15 -3.74 10.06 22.38 0.23 -3.52 16 17 C -0.09 -2.27 10.01 22.28 0.22 -2.05 16 18 C -0.20 -6.63 9.97 22.38 0.22 -6.41 16 19 C 0.13 5.34 6.74 22.69 0.15 5.49 16 20 O -0.51 -21.62 11.97 -92.20 -1.10 -22.73 16 21 C -0.15 -5.67 6.30 -20.13 -0.13 -5.80 16 22 C 0.17 7.65 5.31 85.63 0.45 8.11 16 23 C -0.08 -3.39 5.40 -19.87 -0.11 -3.50 16 24 C -0.14 -5.24 9.74 22.27 0.22 -5.02 16 25 C -0.14 -4.81 10.05 22.27 0.22 -4.59 16 26 C -0.14 -4.93 10.05 22.27 0.22 -4.70 16 27 C -0.16 -6.04 10.05 22.27 0.22 -5.82 16 28 C -0.11 -5.19 9.19 22.27 0.20 -4.98 16 29 H 0.25 12.71 8.31 -92.71 -0.77 11.94 16 30 H 0.05 1.84 7.79 -2.38 -0.02 1.83 16 31 H 0.04 1.85 7.57 -2.39 -0.02 1.83 16 32 H 0.19 4.34 8.06 -2.91 -0.02 4.31 16 33 H 0.15 2.71 8.06 -2.92 -0.02 2.68 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 36 H 0.39 16.79 6.19 -74.06 -0.46 16.33 16 37 H 0.11 5.84 4.84 -9.03 -0.04 5.80 16 38 H 0.02 0.97 8.01 -2.39 -0.02 0.95 16 39 H 0.11 3.94 7.71 -2.91 -0.02 3.92 16 40 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 41 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 42 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.15 7.33 4.98 -2.91 -0.01 7.31 16 Total: -1.00 -62.17 351.48 2.71 -59.46 By element: Atomic # 1 Polarization: 47.49 SS G_CDS: -0.26 Total: 47.23 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 4.91 Total: -36.28 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -2.80 Total: -91.59 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.10 Total: -22.73 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.96 Total: 43.91 kcal Total: -62.17 2.71 -59.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140234522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.912 kcal (2) G-P(sol) polarization free energy of solvation -62.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds