Wall clock time and date at job start Tue Mar 31 2020 13:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48496 * 109.47104 * 239.99629 * 3 2 1 5 5 H 1.48506 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46890 * 119.99497 * 3 2 1 7 7 C 1.38807 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99805 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99594 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99527 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99635 * 359.97438 * 11 10 9 13 13 N 1.34766 * 120.00003 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00078 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47266 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47026 * 180.02562 * 15 14 13 17 17 N 1.46900 * 109.47023 * 180.02562 * 16 15 14 18 18 C 1.46896 * 110.99925 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47165 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 0.96998 * 120.00360 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47285 * 60.00111 * 10 9 7 28 28 H 1.09005 * 109.47096 * 300.00105 * 10 9 7 29 29 H 0.96996 * 120.00568 * 0.02562 * 13 11 10 30 30 H 1.09004 * 109.47108 * 59.99845 * 14 13 11 31 31 H 1.09005 * 109.47004 * 300.00003 * 14 13 11 32 32 H 1.08997 * 109.47182 * 60.00415 * 15 14 13 33 33 H 1.08994 * 109.47353 * 299.99672 * 15 14 13 34 34 H 1.08993 * 109.46986 * 59.99349 * 16 15 14 35 35 H 1.09005 * 109.47011 * 299.99655 * 16 15 14 36 36 H 1.00900 * 110.99886 * 303.95222 * 17 16 15 37 37 H 1.08995 * 109.47391 * 59.99862 * 18 17 16 38 38 H 1.09004 * 109.47183 * 299.99927 * 18 17 16 39 39 H 1.09005 * 109.47610 * 60.00237 * 19 18 17 40 40 H 1.09000 * 109.47256 * 299.99578 * 19 18 17 41 41 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 42 42 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 45 45 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9874 -5.3028 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0039 14 6 2.3304 -7.7151 0.0050 15 6 3.5025 -8.6985 0.0058 16 6 2.9659 -10.1314 0.0064 17 7 4.0913 -11.0756 0.0077 18 6 3.6130 -12.4646 0.0089 19 6 4.8109 -13.4164 0.0110 20 6 4.3203 -14.8413 0.0128 21 6 4.0959 -15.4966 -1.1835 22 6 3.6464 -16.8039 -1.1818 23 6 3.4218 -17.4560 0.0162 24 6 3.6411 -16.7990 1.2125 25 6 4.0950 -15.4933 1.2108 26 1 -0.4850 0.8400 -0.0004 27 1 3.1244 -3.7305 0.8928 28 1 3.1244 -3.7321 -0.8872 29 1 3.8008 -6.1835 0.0041 30 1 1.7213 -7.8758 -0.8846 31 1 1.7222 -7.8745 0.8955 32 1 4.1111 -8.5377 0.8956 33 1 4.1110 -8.5392 -0.8843 34 1 2.3575 -10.2918 -0.8836 35 1 2.3571 -10.2910 0.8964 36 1 4.7069 -10.9055 -0.7734 37 1 3.0092 -12.6417 -0.8810 38 1 3.0086 -12.6400 0.8989 39 1 5.4143 -13.2392 0.9012 40 1 5.4157 -13.2412 -0.8788 41 1 4.2718 -14.9873 -2.1195 42 1 3.4707 -17.3157 -2.1164 43 1 3.0710 -18.4774 0.0175 44 1 3.4615 -17.3070 2.1485 45 1 4.2711 -14.9816 2.1454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154808712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:06 Heat of formation + Delta-G solvation = -32.073472 kcal Electronic energy + Delta-G solvation = -22115.437319 eV Core-core repulsion = 18643.997697 eV Total energy + Delta-G solvation = -3471.439622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.76889 -39.17065 -37.36618 -35.21426 -33.49569 -32.41900 -31.38619 -31.32227 -29.31551 -27.88130 -25.50920 -24.60827 -23.01923 -22.91919 -21.91083 -21.15447 -20.24188 -17.81191 -17.23736 -16.70800 -16.22574 -16.11483 -15.75656 -15.62237 -15.32711 -14.79596 -14.75300 -14.54257 -14.26022 -13.85856 -13.81051 -13.32563 -13.27906 -13.07569 -12.98334 -12.58316 -12.26674 -11.93319 -11.90059 -11.74024 -11.67864 -11.32364 -11.31812 -11.06353 -11.03465 -11.02359 -10.75678 -9.81389 -9.39230 -9.36114 -9.14149 -9.05323 -8.89824 -8.84004 -8.22740 -6.48881 -6.20415 -3.91073 0.90420 0.96296 3.03198 3.12146 3.24396 3.27633 3.29926 3.33764 3.62140 3.86105 4.21724 4.36597 4.46289 4.57519 4.62526 4.69917 4.70584 4.82659 4.86044 4.91127 5.08078 5.10053 5.14625 5.16150 5.22448 5.28039 5.41700 5.43474 5.53022 5.55641 5.63140 5.66038 5.69604 5.87505 5.94589 5.99785 6.03029 6.08667 6.15512 6.19515 6.53692 6.56890 6.65528 6.93513 7.60322 7.73230 8.36125 8.63538 9.24690 10.87010 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.054572 B = 0.001284 C = 0.001273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.964701 B =21801.919357 C =21981.892945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.739 5.739 14 C 0.122 3.878 15 C -0.128 4.128 16 C 0.062 3.938 17 N -0.691 5.691 18 C 0.065 3.935 19 C -0.080 4.080 20 C -0.081 4.081 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.341 0.659 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.960 -33.287 -0.737 35.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.394 5.394 14 C -0.003 4.003 15 C -0.166 4.166 16 C -0.068 4.068 17 N -0.322 5.322 18 C -0.064 4.064 19 C -0.117 4.117 20 C -0.081 4.081 21 C -0.136 4.136 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.134 4.134 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.158 0.842 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.845 -33.487 -0.051 34.904 hybrid contribution 2.096 1.161 -0.943 2.575 sum 11.941 -32.326 -0.994 34.475 Atomic orbital electron populations 1.70004 1.05966 1.27564 1.46786 1.24985 0.95013 0.99000 0.94512 0.86228 0.79243 0.81249 0.78802 1.19946 1.20804 1.19926 1.22836 0.94888 0.91688 1.59076 0.90970 1.85395 1.04981 0.96304 1.96725 1.23535 1.06546 0.95406 1.04930 1.20316 0.86534 0.86323 0.75153 1.90701 1.15400 1.85647 1.47541 1.45980 1.09952 1.05505 1.77938 1.21184 0.95922 0.80773 1.02371 1.21741 0.98104 0.93417 1.03377 1.21850 0.92539 0.91118 1.01265 1.60444 1.18981 1.02616 1.50151 1.21920 0.96152 0.87268 1.01100 1.20577 0.97612 0.89873 1.03661 1.19858 0.99203 0.95822 0.93234 1.21087 0.99939 0.94952 0.97628 1.21166 0.99426 0.94968 0.98158 1.21176 1.00510 1.00024 0.92665 1.21184 0.99333 0.94978 0.98175 1.21113 0.99609 0.94908 0.97727 0.92128 0.89191 0.89235 0.76802 0.91789 0.91565 0.90269 0.91392 0.94743 0.90487 0.84172 0.95008 0.90718 0.89923 0.91026 0.86175 0.86104 0.86169 0.86039 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 12 O -0.52 -11.98 15.86 5.55 0.09 -11.89 16 13 N -0.74 -9.87 5.56 -60.29 -0.33 -10.21 16 14 C 0.12 1.39 5.67 -4.04 -0.02 1.37 16 15 C -0.13 -1.01 5.59 -26.73 -0.15 -1.16 16 16 C 0.06 0.46 5.69 -3.82 -0.02 0.44 16 17 N -0.69 -4.72 6.50 -113.78 -0.74 -5.46 16 18 C 0.06 0.42 5.67 -3.83 -0.02 0.40 16 19 C -0.08 -0.45 5.61 -27.88 -0.16 -0.61 16 20 C -0.08 -0.53 5.13 -104.62 -0.54 -1.07 16 21 C -0.12 -0.76 9.70 -39.58 -0.38 -1.15 16 22 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 23 C -0.13 -0.76 10.05 -39.58 -0.40 -1.16 16 24 C -0.12 -0.74 10.05 -39.58 -0.40 -1.13 16 25 C -0.12 -0.76 9.70 -39.58 -0.38 -1.14 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 28 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 29 H 0.40 4.10 8.47 -40.82 -0.35 3.75 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.34 1.96 8.73 -39.29 -0.34 1.62 16 37 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 41 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -34.85 395.68 -11.48 -46.33 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.41 Total: 0.63 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -2.54 Total: -12.35 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.34 Total: -41.23 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.85 -11.48 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154808712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.258 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds