Wall clock time and date at job start Tue Mar 31 2020 13:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00042 * 2 1 4 4 H 1.48496 * 109.47104 * 239.99629 * 3 2 1 5 5 H 1.48506 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46890 * 119.99497 * 3 2 1 7 7 C 1.38807 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99805 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99594 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99527 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99635 * 359.97438 * 11 10 9 13 13 N 1.34766 * 120.00003 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00078 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47266 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47026 * 180.02562 * 15 14 13 17 17 N 1.46900 * 109.47023 * 180.02562 * 16 15 14 18 18 C 1.46896 * 110.99925 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47165 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 0.96998 * 120.00360 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47285 * 60.00111 * 10 9 7 28 28 H 1.09005 * 109.47096 * 300.00105 * 10 9 7 29 29 H 0.96996 * 120.00568 * 0.02562 * 13 11 10 30 30 H 1.09004 * 109.47108 * 59.99845 * 14 13 11 31 31 H 1.09005 * 109.47004 * 300.00003 * 14 13 11 32 32 H 1.08997 * 109.47182 * 60.00415 * 15 14 13 33 33 H 1.08994 * 109.47353 * 299.99672 * 15 14 13 34 34 H 1.08993 * 109.46986 * 59.99349 * 16 15 14 35 35 H 1.09005 * 109.47011 * 299.99655 * 16 15 14 36 36 H 1.00900 * 110.99886 * 303.95222 * 17 16 15 37 37 H 1.08995 * 109.47391 * 59.99862 * 18 17 16 38 38 H 1.09004 * 109.47183 * 299.99927 * 18 17 16 39 39 H 1.09005 * 109.47610 * 60.00237 * 19 18 17 40 40 H 1.09000 * 109.47256 * 299.99578 * 19 18 17 41 41 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 42 42 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 45 45 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9874 -5.3028 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0039 14 6 2.3304 -7.7151 0.0050 15 6 3.5025 -8.6985 0.0058 16 6 2.9659 -10.1314 0.0064 17 7 4.0913 -11.0756 0.0077 18 6 3.6130 -12.4646 0.0089 19 6 4.8109 -13.4164 0.0110 20 6 4.3203 -14.8413 0.0128 21 6 4.0959 -15.4966 -1.1835 22 6 3.6464 -16.8039 -1.1818 23 6 3.4218 -17.4560 0.0162 24 6 3.6411 -16.7990 1.2125 25 6 4.0950 -15.4933 1.2108 26 1 -0.4850 0.8400 -0.0004 27 1 3.1244 -3.7305 0.8928 28 1 3.1244 -3.7321 -0.8872 29 1 3.8008 -6.1835 0.0041 30 1 1.7213 -7.8758 -0.8846 31 1 1.7222 -7.8745 0.8955 32 1 4.1111 -8.5377 0.8956 33 1 4.1110 -8.5392 -0.8843 34 1 2.3575 -10.2918 -0.8836 35 1 2.3571 -10.2910 0.8964 36 1 4.7069 -10.9055 -0.7734 37 1 3.0092 -12.6417 -0.8810 38 1 3.0086 -12.6400 0.8989 39 1 5.4143 -13.2392 0.9012 40 1 5.4157 -13.2412 -0.8788 41 1 4.2718 -14.9873 -2.1195 42 1 3.4707 -17.3157 -2.1164 43 1 3.0710 -18.4774 0.0175 44 1 3.4615 -17.3070 2.1485 45 1 4.2711 -14.9816 2.1454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154808712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:05 Heat of formation + Delta-G solvation = -55.197273 kcal Electronic energy + Delta-G solvation = -22116.440042 eV Core-core repulsion = 18643.997697 eV Total energy + Delta-G solvation = -3472.442345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.61108 -40.20100 -38.02698 -36.22790 -34.58026 -34.22208 -32.32850 -31.75706 -30.56635 -28.61711 -27.65195 -25.43449 -23.50725 -23.44050 -22.63183 -21.79869 -21.51062 -19.80591 -17.78847 -17.67333 -17.36154 -17.20394 -16.87015 -16.67338 -16.21479 -16.06069 -15.82219 -15.55770 -15.25238 -14.85045 -14.66073 -14.36939 -14.26838 -13.98763 -13.76314 -13.68346 -13.35349 -13.16394 -12.86653 -12.83284 -12.63443 -12.51511 -12.46328 -12.23288 -11.88318 -11.81152 -11.72373 -11.65586 -11.12132 -10.96107 -10.27526 -10.11774 -9.81695 -9.60294 -9.41959 -8.66506 -8.33770 -6.12295 0.44777 0.50703 1.27689 1.44891 1.47733 1.57563 1.61443 2.26166 2.30016 2.85383 3.00398 3.17365 3.33676 3.91598 3.93977 3.99275 3.99955 4.14680 4.17057 4.24272 4.29535 4.29822 4.32226 4.33620 4.51946 4.55163 4.62312 4.66006 4.68575 4.70804 4.78233 4.99112 5.06306 5.16979 5.18938 5.19797 5.25662 5.42268 5.45701 5.58801 5.64339 5.73779 5.99052 6.14005 6.20339 6.45556 6.52625 7.07341 7.25398 8.75318 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.054572 B = 0.001284 C = 0.001273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.964701 B =21801.919357 C =21981.892945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.712 5.712 14 C 0.121 3.879 15 C -0.111 4.111 16 C 0.064 3.936 17 N -0.692 5.692 18 C 0.070 3.930 19 C -0.071 4.071 20 C -0.091 4.091 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.130 4.130 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.418 0.582 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.349 0.651 37 H 0.029 0.971 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.601 -33.800 -0.994 36.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.366 5.366 14 C -0.003 4.003 15 C -0.150 4.150 16 C -0.065 4.065 17 N -0.323 5.323 18 C -0.060 4.060 19 C -0.109 4.109 20 C -0.092 4.092 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.147 4.147 25 C -0.148 4.148 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.255 0.745 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.168 0.832 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.551 -34.042 -0.311 36.284 hybrid contribution 1.310 1.152 -0.861 1.946 sum 13.862 -32.890 -1.172 35.711 Atomic orbital electron populations 1.70175 1.08023 1.28689 1.47942 1.26127 0.95937 1.03316 0.93660 0.85005 0.77808 0.75660 0.79527 1.18613 1.20412 1.18625 1.23188 0.95386 0.91989 1.59036 0.89831 1.85588 1.10706 0.99318 1.97071 1.23380 1.03512 0.94284 1.06904 1.20105 0.86249 0.86812 0.75137 1.90691 1.17535 1.86178 1.50308 1.45731 1.10369 1.05136 1.75380 1.21317 0.97357 0.80103 1.01540 1.21593 0.96561 0.92370 1.04427 1.21771 0.92743 0.91067 1.00964 1.60411 1.18719 1.02542 1.50668 1.21853 0.96356 0.87252 1.00501 1.20496 0.97199 0.89206 1.03969 1.20012 0.99468 0.96278 0.93413 1.21316 1.00091 0.95340 0.98090 1.21450 0.99219 0.95104 0.98983 1.21465 1.00367 1.00914 0.92644 1.21452 0.99183 0.95069 0.99026 1.21325 0.99951 0.95360 0.98159 0.91987 0.87111 0.87077 0.74526 0.92583 0.92623 0.89685 0.89768 0.94821 0.91210 0.83227 0.95277 0.91665 0.90100 0.90147 0.85131 0.84603 0.84569 0.84635 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.55 -31.38 9.50 67.96 0.65 -30.73 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 C 0.53 19.67 7.85 87.66 0.69 20.36 16 12 O -0.57 -26.73 15.86 -3.04 -0.05 -26.78 16 13 N -0.71 -17.54 5.56 -463.05 -2.57 -20.11 16 14 C 0.12 2.59 5.67 86.38 0.49 3.08 16 15 C -0.11 -1.48 5.59 30.60 0.17 -1.31 16 16 C 0.06 0.86 5.69 86.31 0.49 1.35 16 17 N -0.69 -8.16 6.50 -513.90 -3.34 -11.50 16 18 C 0.07 0.82 5.67 86.30 0.49 1.31 16 19 C -0.07 -0.73 5.61 29.85 0.17 -0.56 16 20 C -0.09 -1.14 5.13 -19.86 -0.10 -1.24 16 21 C -0.13 -1.58 9.70 22.27 0.22 -1.36 16 22 C -0.13 -1.48 10.05 22.27 0.22 -1.26 16 23 C -0.14 -1.53 10.05 22.27 0.22 -1.30 16 24 C -0.13 -1.52 10.05 22.27 0.22 -1.29 16 25 C -0.13 -1.64 9.70 22.27 0.22 -1.43 16 26 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 28 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 29 H 0.42 7.19 8.47 -92.71 -0.79 6.41 16 30 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.35 3.18 8.73 -89.69 -0.78 2.39 16 37 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.08 0.86 8.08 -2.38 -0.02 0.84 16 40 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 41 H 0.13 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 44 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 45 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -77.32 395.68 -0.35 -77.68 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.59 Total: 18.72 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 5.05 Total: -17.78 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -5.63 Total: -87.58 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -77.32 -0.35 -77.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154808712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.479 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds