Wall clock time and date at job start Tue Mar 31 2020 12:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.47145 * 2 1 4 4 C 1.34806 * 117.00196 * 180.02562 * 3 2 1 5 5 O 1.21558 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.47043 * 120.00282 * 180.02562 * 4 3 2 7 7 C 1.40024 * 120.92763 * 5.77430 * 6 4 3 8 8 N 1.31987 * 119.07395 * 180.25508 * 7 6 4 9 9 C 1.32805 * 121.14059 * 359.74134 * 8 7 6 10 10 N 1.37931 * 118.96785 * 179.97438 * 9 8 7 11 11 C 1.47016 * 110.99997 * 128.21030 * 10 9 8 12 12 C 1.53097 * 109.25793 * 177.61337 * 11 10 9 13 13 O 1.43012 * 109.26153 * 56.84909 * 12 11 10 14 14 C 1.43026 * 113.73852 * 301.33297 * 13 12 11 15 15 C 1.47017 * 110.99742 * 4.58225 * 10 9 8 16 16 N 1.32436 * 122.07079 * 0.02562 * 9 8 7 17 17 C 1.32844 * 120.78231 * 359.97438 * 16 9 8 18 18 N 1.37934 * 120.60447 * 179.97438 * 17 16 9 19 19 C 1.36927 * 120.00288 * 354.81697 * 18 17 16 20 20 H 1.08001 * 119.99629 * 4.94229 * 19 18 17 21 21 C 1.38895 * 120.00186 * 184.66593 * 19 18 17 22 22 N 1.31478 * 120.00005 * 175.01734 * 21 19 18 23 23 Si 1.86806 * 120.00028 * 355.02219 * 21 19 18 24 24 H 1.48500 * 109.47109 * 94.74404 * 23 21 19 25 25 H 1.48495 * 109.47147 * 214.74439 * 23 21 19 26 26 H 1.48499 * 109.47152 * 334.74559 * 23 21 19 27 27 H 1.09008 * 109.46859 * 299.99847 * 1 2 3 28 28 H 1.09005 * 109.47214 * 59.99567 * 1 2 3 29 29 H 1.08991 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46681 * 240.00518 * 2 1 3 31 31 H 1.08991 * 109.47075 * 120.00250 * 2 1 3 32 32 H 1.07997 * 120.46432 * 359.97438 * 7 6 4 33 33 H 1.09000 * 109.50712 * 297.54417 * 11 10 9 34 34 H 1.09000 * 109.50290 * 57.67709 * 11 10 9 35 35 H 1.09004 * 109.50101 * 296.91453 * 12 11 10 36 36 H 1.08997 * 109.54108 * 176.81024 * 12 11 10 37 37 H 1.09002 * 109.50203 * 298.73370 * 14 13 12 38 38 H 1.08995 * 109.54024 * 178.62566 * 14 13 12 39 39 H 1.09008 * 109.50562 * 302.32535 * 15 10 9 40 40 H 1.08996 * 109.50879 * 62.40793 * 15 10 9 41 41 H 0.97007 * 119.99981 * 174.81249 * 18 17 16 42 42 H 0.97007 * 119.99964 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5456 -0.0005 5 8 4.0909 0.5816 -0.0015 6 6 3.9125 2.9044 0.0000 7 6 3.0833 4.0261 0.1219 8 7 3.6263 5.2291 0.1130 9 6 4.9395 5.3890 -0.0041 10 7 5.4591 6.6667 -0.0088 11 6 6.5402 6.7995 0.9786 12 6 7.1267 8.2114 0.8984 13 8 6.0839 9.1679 1.1055 14 6 5.0146 9.0675 0.1610 15 6 4.4067 7.6643 0.2338 16 7 5.7658 4.3603 -0.1175 17 6 5.3045 3.1145 -0.1177 18 7 6.1684 2.0458 -0.2365 19 6 7.5012 2.2645 -0.4620 20 1 7.8896 3.2722 -0.4674 21 6 8.3544 1.1901 -0.6782 22 7 9.6134 1.4031 -0.9915 23 14 7.7132 -0.5577 -0.5238 24 1 7.3109 -1.0574 -1.8631 25 1 8.7804 -1.4294 0.0297 26 1 6.5386 -0.5756 0.3846 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.0140 3.9088 0.2173 33 1 6.1428 6.6267 1.9788 34 1 7.3201 6.0687 0.7648 35 1 7.5718 8.3653 -0.0846 36 1 7.8902 8.3332 1.6667 37 1 5.3983 9.2463 -0.8435 38 1 4.2500 9.8080 0.3957 39 1 3.6293 7.5647 -0.5238 40 1 3.9748 7.5048 1.2217 41 1 5.8318 1.1392 -0.1602 42 1 10.2095 0.6527 -1.1421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:44 Heat of formation + Delta-G solvation = -52.686014 kcal Electronic energy + Delta-G solvation = -27686.041626 eV Core-core repulsion = 23667.414963 eV Total energy + Delta-G solvation = -4018.626663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62796 -39.78541 -38.76006 -36.77279 -35.72890 -35.10835 -32.88804 -31.95213 -31.61294 -30.94961 -30.01765 -27.28073 -25.47041 -24.12070 -23.64887 -22.76522 -21.81344 -21.09927 -20.33363 -18.67007 -17.74365 -17.52913 -16.53716 -16.22558 -16.16765 -15.85265 -15.72693 -15.04969 -14.87819 -14.81737 -14.46942 -14.12150 -13.93851 -13.53408 -13.39816 -13.25456 -13.03031 -12.75742 -12.35748 -12.19803 -11.88550 -11.81959 -11.55406 -11.34606 -11.28660 -11.04399 -10.93618 -10.79398 -10.58842 -10.35610 -10.32677 -10.01792 -9.55294 -9.51553 -9.34741 -8.34494 -8.12728 -7.74322 -6.86391 -4.11195 1.31202 2.28246 2.93801 2.99562 3.06108 3.08483 3.14341 3.57942 3.79938 3.93881 4.34543 4.49817 4.82783 4.94622 4.97907 5.01161 5.07442 5.15345 5.23387 5.25307 5.33654 5.37728 5.40678 5.51731 5.72005 5.73501 5.75805 5.77615 5.86399 5.93409 6.03638 6.11613 6.16740 6.25629 6.61362 6.84005 6.91878 7.14371 7.18788 7.37933 7.79996 7.94816 8.21949 8.33008 8.79007 8.89612 9.32463 10.20078 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.005034 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.338236 B = 5560.772523 C = 8375.202732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.359 6.359 4 C 0.526 3.474 5 O -0.549 6.549 6 C -0.377 4.377 7 C 0.271 3.729 8 N -0.636 5.636 9 C 0.533 3.467 10 N -0.459 5.459 11 C 0.032 3.968 12 C 0.064 3.936 13 O -0.389 6.389 14 C 0.060 3.940 15 C 0.039 3.961 16 N -0.566 5.566 17 C 0.392 3.608 18 N -0.487 5.487 19 C -0.288 4.288 20 H 0.137 0.863 21 C 0.052 3.948 22 N -0.832 5.832 23 Si 0.870 3.130 24 H -0.263 1.263 25 H -0.267 1.267 26 H -0.247 1.247 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.160 0.840 33 H 0.049 0.951 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.410 0.590 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 5.087 2.717 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.377 3.623 5 O -0.441 6.441 6 C -0.394 4.394 7 C 0.101 3.899 8 N -0.365 5.365 9 C 0.173 3.827 10 N -0.179 5.179 11 C -0.095 4.095 12 C -0.013 4.013 13 O -0.308 6.308 14 C -0.017 4.017 15 C -0.089 4.089 16 N -0.296 5.296 17 C 0.139 3.861 18 N -0.098 5.098 19 C -0.420 4.420 20 H 0.154 0.846 21 C -0.159 4.159 22 N -0.464 5.464 23 Si 0.693 3.307 24 H -0.187 1.187 25 H -0.192 1.192 26 H -0.171 1.171 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.177 0.823 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.258 0.742 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.409 5.610 2.289 12.044 hybrid contribution -0.815 -2.782 0.360 2.921 sum -11.225 2.828 2.649 11.875 Atomic orbital electron populations 1.21786 0.93032 1.02546 1.03373 1.22894 0.94858 0.81066 1.02356 1.86525 1.24460 1.31293 1.85371 1.20686 0.79725 0.89391 0.72493 1.90540 1.59391 1.43060 1.51158 1.19213 0.93763 0.91324 1.35129 1.22708 0.98765 0.85913 0.82483 1.68175 1.12282 1.25606 1.30457 1.20413 0.85284 0.88923 0.88082 1.58342 1.11573 1.00575 1.47429 1.22854 0.94570 0.99389 0.92693 1.22735 0.89717 0.86414 1.02417 1.87956 1.32147 1.56134 1.54529 1.22784 0.89725 0.95963 0.93206 1.22624 0.93307 0.90031 1.02911 1.67391 1.37847 0.97104 1.27217 1.17294 0.84960 0.86420 0.97452 1.42176 1.07479 1.07196 1.52977 1.20001 0.81056 0.98369 1.42552 0.84584 1.25260 0.95334 0.99711 0.95640 1.69657 1.04091 1.33752 1.38859 0.86687 0.80254 0.83030 0.80722 1.18722 1.19202 1.17080 0.91584 0.91564 0.90653 0.91581 0.91603 0.82251 0.93304 0.87146 0.91891 0.88003 0.92323 0.88212 0.88319 0.92406 0.74161 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.82 6.20 37.16 0.23 1.05 16 3 O -0.36 -5.87 9.57 -40.78 -0.39 -6.26 16 4 C 0.53 10.54 7.88 34.30 0.27 10.81 16 5 O -0.55 -12.26 13.60 -19.31 -0.26 -12.52 16 6 C -0.38 -7.90 5.92 -104.51 -0.62 -8.52 16 7 C 0.27 4.94 10.89 -16.82 -0.18 4.75 16 8 N -0.64 -12.08 8.63 -13.69 -0.12 -12.20 16 9 C 0.53 10.92 7.24 -323.17 -2.34 8.58 16 10 N -0.46 -8.03 4.78 -175.17 -0.84 -8.87 16 11 C 0.03 0.51 5.44 -3.71 -0.02 0.49 16 12 C 0.06 0.84 7.01 37.21 0.26 1.10 16 13 O -0.39 -5.28 10.83 -35.23 -0.38 -5.66 16 14 C 0.06 0.72 7.01 37.21 0.26 0.98 16 15 C 0.04 0.56 4.81 -3.71 -0.02 0.54 16 16 N -0.57 -13.18 8.33 -12.96 -0.11 -13.29 16 17 C 0.39 9.35 7.47 -154.85 -1.16 8.20 16 18 N -0.49 -12.30 5.10 -10.76 -0.05 -12.36 16 19 C -0.29 -7.71 10.19 -15.03 -0.15 -7.87 16 20 H 0.14 3.90 7.35 -52.49 -0.39 3.52 16 21 C 0.05 1.34 5.50 -17.46 -0.10 1.25 16 22 N -0.83 -22.20 13.96 55.49 0.77 -21.42 16 23 Si 0.87 19.60 27.80 -169.99 -4.73 14.87 16 24 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.25 -5.66 6.44 56.52 0.36 -5.29 16 27 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.16 2.33 7.71 -52.49 -0.40 1.93 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.11 1.97 7.58 -51.93 -0.39 1.57 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.39 7.74 -51.92 -0.40 0.99 16 40 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 41 H 0.41 10.23 2.41 -40.82 -0.10 10.13 16 42 H 0.29 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -29.95 349.66 -9.52 -39.47 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -5.50 Total: 12.62 kcal Atomic # 6 Polarization: 23.53 SS G_CDS: -3.18 Total: 20.35 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.34 Total: -68.13 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -1.03 Total: -24.44 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.73 Total: 14.87 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.95 -9.52 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.220 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds