Wall clock time and date at job start Tue Mar 31 2020 12:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.47145 * 2 1 4 4 C 1.34806 * 117.00196 * 180.02562 * 3 2 1 5 5 O 1.21558 * 119.99655 * 0.02562 * 4 3 2 6 6 C 1.47043 * 120.00282 * 180.02562 * 4 3 2 7 7 C 1.40024 * 120.92763 * 5.77430 * 6 4 3 8 8 N 1.31987 * 119.07395 * 180.25508 * 7 6 4 9 9 C 1.32805 * 121.14059 * 359.74134 * 8 7 6 10 10 N 1.37931 * 118.96785 * 179.97438 * 9 8 7 11 11 C 1.47016 * 110.99997 * 128.21030 * 10 9 8 12 12 C 1.53097 * 109.25793 * 177.61337 * 11 10 9 13 13 O 1.43012 * 109.26153 * 56.84909 * 12 11 10 14 14 C 1.43026 * 113.73852 * 301.33297 * 13 12 11 15 15 C 1.47017 * 110.99742 * 4.58225 * 10 9 8 16 16 N 1.32436 * 122.07079 * 0.02562 * 9 8 7 17 17 C 1.32844 * 120.78231 * 359.97438 * 16 9 8 18 18 N 1.37934 * 120.60447 * 179.97438 * 17 16 9 19 19 C 1.36927 * 120.00288 * 354.81697 * 18 17 16 20 20 H 1.08001 * 119.99629 * 4.94229 * 19 18 17 21 21 C 1.38895 * 120.00186 * 184.66593 * 19 18 17 22 22 N 1.31478 * 120.00005 * 175.01734 * 21 19 18 23 23 Si 1.86806 * 120.00028 * 355.02219 * 21 19 18 24 24 H 1.48500 * 109.47109 * 94.74404 * 23 21 19 25 25 H 1.48495 * 109.47147 * 214.74439 * 23 21 19 26 26 H 1.48499 * 109.47152 * 334.74559 * 23 21 19 27 27 H 1.09008 * 109.46859 * 299.99847 * 1 2 3 28 28 H 1.09005 * 109.47214 * 59.99567 * 1 2 3 29 29 H 1.08991 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46681 * 240.00518 * 2 1 3 31 31 H 1.08991 * 109.47075 * 120.00250 * 2 1 3 32 32 H 1.07997 * 120.46432 * 359.97438 * 7 6 4 33 33 H 1.09000 * 109.50712 * 297.54417 * 11 10 9 34 34 H 1.09000 * 109.50290 * 57.67709 * 11 10 9 35 35 H 1.09004 * 109.50101 * 296.91453 * 12 11 10 36 36 H 1.08997 * 109.54108 * 176.81024 * 12 11 10 37 37 H 1.09002 * 109.50203 * 298.73370 * 14 13 12 38 38 H 1.08995 * 109.54024 * 178.62566 * 14 13 12 39 39 H 1.09008 * 109.50562 * 302.32535 * 15 10 9 40 40 H 1.08996 * 109.50879 * 62.40793 * 15 10 9 41 41 H 0.97007 * 119.99981 * 174.81249 * 18 17 16 42 42 H 0.97007 * 119.99964 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5456 -0.0005 5 8 4.0909 0.5816 -0.0015 6 6 3.9125 2.9044 0.0000 7 6 3.0833 4.0261 0.1219 8 7 3.6263 5.2291 0.1130 9 6 4.9395 5.3890 -0.0041 10 7 5.4591 6.6667 -0.0088 11 6 6.5402 6.7995 0.9786 12 6 7.1267 8.2114 0.8984 13 8 6.0839 9.1679 1.1055 14 6 5.0146 9.0675 0.1610 15 6 4.4067 7.6643 0.2338 16 7 5.7658 4.3603 -0.1175 17 6 5.3045 3.1145 -0.1177 18 7 6.1684 2.0458 -0.2365 19 6 7.5012 2.2645 -0.4620 20 1 7.8896 3.2722 -0.4674 21 6 8.3544 1.1901 -0.6782 22 7 9.6134 1.4031 -0.9915 23 14 7.7132 -0.5577 -0.5238 24 1 7.3109 -1.0574 -1.8631 25 1 8.7804 -1.4294 0.0297 26 1 6.5386 -0.5756 0.3846 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.0140 3.9088 0.2173 33 1 6.1428 6.6267 1.9788 34 1 7.3201 6.0687 0.7648 35 1 7.5718 8.3653 -0.0846 36 1 7.8902 8.3332 1.6667 37 1 5.3983 9.2463 -0.8435 38 1 4.2500 9.8080 0.3957 39 1 3.6293 7.5647 -0.5238 40 1 3.9748 7.5048 1.2217 41 1 5.8318 1.1392 -0.1602 42 1 10.2095 0.6527 -1.1421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:43 Heat of formation + Delta-G solvation = -71.035298 kcal Electronic energy + Delta-G solvation = -27686.837311 eV Core-core repulsion = 23667.414963 eV Total energy + Delta-G solvation = -4019.422348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25021 -41.22668 -40.13322 -38.33952 -37.27910 -36.55967 -34.69534 -33.55769 -32.80498 -32.14437 -31.54390 -28.59940 -27.26207 -25.44838 -24.98317 -24.00410 -23.41615 -22.56047 -21.64351 -20.45453 -19.30417 -19.07274 -18.11224 -17.69148 -17.57120 -17.25392 -17.00183 -16.54015 -16.46718 -16.01582 -15.83121 -15.53121 -15.22581 -15.16328 -14.89178 -14.71229 -14.61754 -14.08884 -13.65022 -13.58374 -13.32178 -12.91644 -12.79638 -12.70927 -12.68363 -12.53202 -12.43858 -12.33210 -12.15205 -11.69519 -11.55767 -11.49409 -11.24440 -11.20202 -10.65560 -10.03366 -9.83747 -9.38678 -8.74009 -6.10962 -0.32289 0.57412 1.16742 1.19648 1.30353 1.50195 1.69262 1.98460 2.11515 2.60299 2.69372 2.91861 3.15822 3.41537 3.79876 3.86003 3.88875 3.99480 4.03923 4.07462 4.13208 4.16350 4.22544 4.33868 4.38132 4.54378 4.66577 4.74468 4.79649 4.88321 4.93387 4.96886 4.99942 5.08748 5.21468 5.27024 5.47183 5.55629 5.67761 5.96938 6.13072 6.22108 6.38270 6.73482 6.96502 7.04678 7.57488 8.38374 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.005034 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.338236 B = 5560.772523 C = 8375.202732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.534 3.466 5 O -0.571 6.571 6 C -0.389 4.389 7 C 0.283 3.717 8 N -0.621 5.621 9 C 0.535 3.465 10 N -0.467 5.467 11 C 0.035 3.965 12 C 0.073 3.927 13 O -0.395 6.395 14 C 0.063 3.937 15 C 0.040 3.960 16 N -0.606 5.606 17 C 0.406 3.594 18 N -0.516 5.516 19 C -0.312 4.312 20 H 0.100 0.900 21 C 0.013 3.987 22 N -0.883 5.883 23 Si 0.928 3.072 24 H -0.260 1.260 25 H -0.252 1.252 26 H -0.255 1.255 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.207 0.793 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.065 0.935 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.410 0.590 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 6.074 3.244 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.263 6.263 4 C 0.384 3.616 5 O -0.465 6.465 6 C -0.405 4.405 7 C 0.114 3.886 8 N -0.349 5.349 9 C 0.176 3.824 10 N -0.187 5.187 11 C -0.092 4.092 12 C -0.004 4.004 13 O -0.313 6.313 14 C -0.014 4.014 15 C -0.087 4.087 16 N -0.338 5.338 17 C 0.153 3.847 18 N -0.132 5.132 19 C -0.443 4.443 20 H 0.117 0.883 21 C -0.193 4.193 22 N -0.518 5.518 23 Si 0.749 3.251 24 H -0.185 1.185 25 H -0.175 1.175 26 H -0.179 1.179 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.224 0.776 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.258 0.742 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.158 6.677 2.826 15.907 hybrid contribution -0.123 -2.786 0.241 2.799 sum -14.282 3.892 3.067 15.117 Atomic orbital electron populations 1.21809 0.89547 1.04432 1.04017 1.23334 0.97473 0.79154 1.02305 1.86509 1.21825 1.33596 1.84398 1.20523 0.80920 0.88523 0.71588 1.90540 1.60398 1.43730 1.51852 1.19529 0.92880 0.93290 1.34809 1.23418 1.00426 0.84500 0.80242 1.68360 1.11294 1.25891 1.29305 1.20963 0.85718 0.89591 0.86142 1.58386 1.12863 0.99882 1.47609 1.22834 0.93491 1.00961 0.91866 1.22745 0.89909 0.84205 1.03572 1.87963 1.32455 1.55758 1.55139 1.22959 0.90029 0.94949 0.93437 1.22794 0.92684 0.90411 1.02802 1.67475 1.39295 0.97693 1.29320 1.17971 0.86265 0.86692 0.93738 1.42038 1.06910 1.07321 1.56970 1.19583 0.82285 0.97111 1.45348 0.88258 1.25795 0.95381 1.02704 0.95434 1.69727 1.05141 1.34745 1.42139 0.85835 0.79603 0.79202 0.80412 1.18488 1.17532 1.17940 0.90803 0.91013 0.88158 0.91879 0.91628 0.77623 0.93663 0.89826 0.91550 0.85708 0.91706 0.84837 0.87849 0.92667 0.74199 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 10.29 71.98 0.74 -1.33 16 2 C 0.05 1.20 6.20 71.98 0.45 1.65 16 3 O -0.35 -10.34 9.57 -57.18 -0.55 -10.89 16 4 C 0.53 20.60 7.88 70.13 0.55 21.15 16 5 O -0.57 -25.26 13.60 19.65 0.27 -24.99 16 6 C -0.39 -15.85 5.92 -19.79 -0.12 -15.96 16 7 C 0.28 9.49 10.89 85.10 0.93 10.42 16 8 N -0.62 -22.13 8.63 -197.24 -1.70 -23.83 16 9 C 0.54 21.63 7.24 261.61 1.89 23.52 16 10 N -0.47 -16.01 4.78 -708.10 -3.38 -19.39 16 11 C 0.04 1.13 5.44 86.31 0.47 1.60 16 12 C 0.07 1.79 7.01 72.01 0.50 2.30 16 13 O -0.39 -9.65 10.83 -148.98 -1.61 -11.26 16 14 C 0.06 1.30 7.01 72.01 0.50 1.80 16 15 C 0.04 1.04 4.81 86.31 0.41 1.46 16 16 N -0.61 -29.03 8.33 -194.92 -1.62 -30.66 16 17 C 0.41 19.78 7.47 133.82 1.00 20.78 16 18 N -0.52 -27.21 5.10 -187.96 -0.96 -28.17 16 19 C -0.31 -17.90 10.19 84.06 0.86 -17.04 16 20 H 0.10 6.24 7.35 -2.91 -0.02 6.22 16 21 C 0.01 0.70 5.50 84.90 0.47 1.16 16 22 N -0.88 -50.10 13.96 21.66 0.30 -49.79 16 23 Si 0.93 42.23 27.80 68.60 1.91 44.14 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 25 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.25 -11.77 6.44 99.48 0.64 -11.13 16 27 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.21 4.98 7.71 -2.91 -0.02 4.96 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 3.15 7.58 -2.39 -0.02 3.13 16 35 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.10 2.61 7.74 -2.38 -0.02 2.59 16 40 H 0.05 1.50 8.07 -2.39 -0.02 1.48 16 41 H 0.41 21.05 2.41 -92.70 -0.22 20.83 16 42 H 0.29 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -69.15 349.66 2.07 -67.08 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.77 Total: 36.26 kcal Atomic # 6 Polarization: 42.84 SS G_CDS: 8.66 Total: 51.50 kcal Atomic # 7 Polarization: -144.47 SS G_CDS: -7.37 Total: -151.84 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -1.89 Total: -47.14 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.91 Total: 44.14 kcal Total: -69.15 2.07 -67.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.959 kcal (2) G-P(sol) polarization free energy of solvation -69.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds