Wall clock time and date at job start Tue Mar 31 2020 13:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00034 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00364 * 3 2 1 5 5 H 1.48498 * 109.47481 * 30.00443 * 3 2 1 6 6 H 1.48501 * 109.46931 * 150.00491 * 3 2 1 7 7 C 1.38815 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00267 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99408 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46997 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47373 * 180.02562 * 12 11 10 14 14 C 1.34767 * 119.99818 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00273 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00042 * 179.97438 * 14 13 12 17 17 H 1.09006 * 109.69613 * 300.00548 * 16 14 13 18 18 C 1.53416 * 109.70066 * 60.56388 * 16 14 13 19 19 O 1.42818 * 108.38905 * 184.41495 * 18 16 14 20 20 C 1.35842 * 117.88001 * 310.87520 * 19 18 16 21 21 C 1.39110 * 118.48205 * 197.12520 * 20 19 18 22 22 C 1.38184 * 120.19738 * 180.21217 * 21 20 19 23 23 F 1.35100 * 120.04658 * 180.02562 * 22 21 20 24 24 C 1.38523 * 119.90766 * 0.02667 * 22 21 20 25 25 C 1.38065 * 119.95350 * 359.90753 * 24 22 21 26 26 C 1.38393 * 121.80069 * 17.19129 * 20 19 18 27 27 C 1.50795 * 121.41238 * 359.49227 * 26 20 19 28 28 H 0.97000 * 120.00111 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 30 30 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 31 31 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 32 32 H 1.09000 * 109.47486 * 300.00065 * 11 10 9 33 33 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 34 34 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 35 35 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 36 36 H 0.97003 * 119.99531 * 0.02562 * 13 12 11 37 37 H 1.09002 * 109.67681 * 304.13987 * 18 16 14 38 38 H 1.09000 * 109.67830 * 64.68375 * 18 16 14 39 39 H 1.07992 * 119.89982 * 0.22790 * 21 20 19 40 40 H 1.08000 * 120.02292 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.82644 * 180.02562 * 25 24 22 42 42 H 1.09005 * 109.41371 * 257.82324 * 27 26 20 43 43 H 1.08995 * 109.48388 * 137.93481 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6162 -2.1914 -0.0011 12 6 6.3812 -3.5165 -0.0017 13 7 7.8216 -3.2489 -0.0011 14 6 8.6973 -4.2733 -0.0010 15 8 8.2929 -5.4167 -0.0019 16 6 10.1789 -3.9980 -0.0009 17 1 10.4464 -3.4264 -0.8897 18 6 10.5577 -3.2056 1.2569 19 8 11.9440 -2.8713 1.1784 20 6 12.8205 -3.8637 0.8746 21 6 14.1705 -3.6613 1.1422 22 6 15.0935 -4.6453 0.8433 23 9 16.4038 -4.4457 1.1049 24 6 14.6733 -5.8367 0.2751 25 6 13.3335 -6.0394 0.0103 26 6 12.4043 -5.0568 0.3102 27 6 10.9496 -5.3205 0.0133 28 1 -0.4850 0.8400 0.0004 29 1 3.8645 -0.3622 0.0030 30 1 3.8489 -3.0424 0.8891 31 1 3.8483 -3.0427 -0.8909 32 1 5.8796 -1.6199 -0.8910 33 1 5.8796 -1.6200 0.8890 34 1 6.1179 -4.0885 0.8880 35 1 6.1178 -4.0877 -0.8919 36 1 8.1449 -2.3343 0.0000 37 1 9.9626 -2.2939 1.3094 38 1 10.3763 -3.8144 2.1427 39 1 14.4982 -2.7324 1.5850 40 1 15.3931 -6.6069 0.0403 41 1 13.0082 -6.9692 -0.4324 42 1 10.5355 -5.9734 0.7818 43 1 10.8589 -5.8036 -0.9596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158046300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:56 Heat of formation + Delta-G solvation = -91.034283 kcal Electronic energy + Delta-G solvation = -25599.839514 eV Core-core repulsion = 21559.629984 eV Total energy + Delta-G solvation = -4040.209530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.35276 -41.48468 -39.81440 -37.84056 -36.37132 -34.65450 -34.61614 -32.18650 -31.10928 -30.96232 -29.90175 -26.26171 -25.95922 -24.46907 -23.42900 -22.34775 -21.53717 -21.19741 -20.08469 -18.85315 -18.08523 -17.52838 -17.31057 -16.57171 -16.18426 -16.15603 -15.91399 -15.60616 -15.50265 -15.02782 -14.95562 -14.50693 -14.15303 -14.08795 -13.86404 -13.61610 -13.54906 -13.37379 -12.86775 -12.59972 -12.20399 -12.15332 -11.99998 -11.74757 -11.41504 -11.28135 -11.20305 -11.10551 -10.90093 -10.77876 -10.22740 -10.09505 -9.63938 -9.32382 -9.26190 -8.95199 -8.73272 -7.29575 -5.81117 -3.17656 0.59150 0.74654 2.22962 2.52899 2.82067 3.04776 3.32350 3.34802 3.41197 3.84966 3.92943 4.04265 4.13276 4.26384 4.47079 4.49675 4.54304 4.60092 4.79586 4.83925 4.86338 4.96415 5.01058 5.09937 5.37095 5.39709 5.41470 5.48933 5.53837 5.57108 5.67126 5.69804 5.82966 5.85762 5.86960 6.04433 6.18230 6.19127 6.61075 6.64165 6.78791 7.17040 7.87147 7.94558 8.37494 9.15993 9.87992 10.07110 11.37141 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031396 B = 0.001826 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.630321 B =15332.988612 C =16105.645506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.142 4.142 12 C 0.121 3.879 13 N -0.726 5.726 14 C 0.520 3.480 15 O -0.531 6.531 16 C -0.149 4.149 17 H 0.115 0.885 18 C 0.072 3.928 19 O -0.305 6.305 20 C 0.158 3.842 21 C -0.184 4.184 22 C 0.129 3.871 23 F -0.135 7.135 24 C -0.183 4.183 25 C -0.053 4.053 26 C -0.165 4.165 27 C -0.059 4.059 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.094 0.906 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.423 -9.994 0.972 33.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.032 3.968 11 C -0.181 4.181 12 C -0.002 4.002 13 N -0.377 5.377 14 C 0.305 3.695 15 O -0.407 6.407 16 C -0.171 4.171 17 H 0.133 0.867 18 C -0.003 4.003 19 O -0.218 6.218 20 C 0.112 3.888 21 C -0.204 4.204 22 C 0.110 3.890 23 F -0.114 7.114 24 C -0.202 4.202 25 C -0.071 4.071 26 C -0.166 4.166 27 C -0.096 4.096 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.235 0.765 37 H 0.135 0.865 38 H 0.095 0.905 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 31.935 -10.701 1.022 33.696 hybrid contribution 0.760 1.657 -0.038 1.824 sum 32.695 -9.043 0.984 33.937 Atomic orbital electron populations 1.69703 1.05107 1.25884 1.57359 1.24697 0.95276 0.97277 1.01944 0.86513 0.79118 0.84889 0.77747 1.21055 1.21673 1.20425 1.19068 0.80556 0.94842 1.43265 0.89140 1.42679 1.04125 1.02109 1.91321 1.20496 0.87560 0.89582 0.99116 1.22005 0.97269 0.96122 1.02660 1.21397 0.77842 0.98066 1.02924 1.46117 1.07379 1.09273 1.74962 1.20096 0.87473 0.85371 0.76543 1.90740 1.79894 1.21173 1.48940 1.22051 0.93476 0.99970 1.01567 0.86749 1.23011 0.79431 1.01323 0.96562 1.86040 1.16981 1.33628 1.85135 1.18293 0.88988 0.87529 0.93970 1.20417 0.90633 1.01489 1.07844 1.17251 0.77804 0.94677 0.99262 1.91523 1.32643 1.95394 1.91795 1.21046 0.97200 0.97337 1.04602 1.20768 0.91298 0.98383 0.96654 1.19936 0.96939 0.94933 1.04821 1.20318 0.88778 0.95831 1.04665 0.92999 0.80686 0.95231 0.95127 0.91266 0.91280 0.90958 0.90959 0.76471 0.86526 0.90507 0.83818 0.84399 0.84375 0.88763 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 21.67 27.74 -169.99 -4.72 16.96 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 7 C -0.25 -6.96 10.47 -15.06 -0.16 -7.12 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -17.49 5.41 -59.90 -0.32 -17.81 16 10 C 0.16 2.89 6.26 -4.04 -0.03 2.87 16 11 C -0.14 -1.83 5.44 -26.73 -0.15 -1.97 16 12 C 0.12 1.37 5.67 -4.04 -0.02 1.34 16 13 N -0.73 -6.40 5.44 -60.29 -0.33 -6.73 16 14 C 0.52 5.07 7.16 -10.99 -0.08 4.99 16 15 O -0.53 -7.25 15.80 5.56 0.09 -7.16 16 16 C -0.15 -1.05 2.76 -91.52 -0.25 -1.30 16 17 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 18 C 0.07 0.46 6.26 37.37 0.23 0.69 16 19 O -0.30 -2.48 10.27 -19.24 -0.20 -2.68 16 20 C 0.16 1.32 6.47 -39.20 -0.25 1.06 16 21 C -0.18 -1.51 9.92 -39.28 -0.39 -1.90 16 22 C 0.13 1.04 7.30 -39.50 -0.29 0.76 16 23 F -0.14 -1.18 17.27 2.25 0.04 -1.14 16 24 C -0.18 -1.23 10.03 -39.54 -0.40 -1.63 16 25 C -0.05 -0.34 9.66 -39.54 -0.38 -0.72 16 26 C -0.17 -1.24 5.75 -104.41 -0.60 -1.85 16 27 C -0.06 -0.43 4.66 -27.80 -0.13 -0.56 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 29 H 0.36 8.01 5.53 -40.82 -0.23 7.78 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.40 2.49 7.91 -40.82 -0.32 2.17 16 37 H 0.12 0.51 7.53 -51.93 -0.39 0.12 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.09 0.77 7.70 -51.93 -0.40 0.37 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -34.07 362.40 -8.19 -42.26 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.00 Total: 4.51 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.98 Total: -5.31 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.12 Total: -52.89 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.11 Total: -9.85 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.72 Total: 16.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.07 -8.19 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158046300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.779 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds