Wall clock time and date at job start Tue Mar 31 2020 13:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00034 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00364 * 3 2 1 5 5 H 1.48498 * 109.47481 * 30.00443 * 3 2 1 6 6 H 1.48501 * 109.46931 * 150.00491 * 3 2 1 7 7 C 1.38815 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00267 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99408 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46997 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47373 * 180.02562 * 12 11 10 14 14 C 1.34767 * 119.99818 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00273 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00042 * 179.97438 * 14 13 12 17 17 H 1.09006 * 109.69613 * 300.00548 * 16 14 13 18 18 C 1.53416 * 109.70066 * 60.56388 * 16 14 13 19 19 O 1.42818 * 108.38905 * 184.41495 * 18 16 14 20 20 C 1.35842 * 117.88001 * 310.87520 * 19 18 16 21 21 C 1.39110 * 118.48205 * 197.12520 * 20 19 18 22 22 C 1.38184 * 120.19738 * 180.21217 * 21 20 19 23 23 F 1.35100 * 120.04658 * 180.02562 * 22 21 20 24 24 C 1.38523 * 119.90766 * 0.02667 * 22 21 20 25 25 C 1.38065 * 119.95350 * 359.90753 * 24 22 21 26 26 C 1.38393 * 121.80069 * 17.19129 * 20 19 18 27 27 C 1.50795 * 121.41238 * 359.49227 * 26 20 19 28 28 H 0.97000 * 120.00111 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 30 30 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 31 31 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 32 32 H 1.09000 * 109.47486 * 300.00065 * 11 10 9 33 33 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 34 34 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 35 35 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 36 36 H 0.97003 * 119.99531 * 0.02562 * 13 12 11 37 37 H 1.09002 * 109.67681 * 304.13987 * 18 16 14 38 38 H 1.09000 * 109.67830 * 64.68375 * 18 16 14 39 39 H 1.07992 * 119.89982 * 0.22790 * 21 20 19 40 40 H 1.08000 * 120.02292 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.82644 * 180.02562 * 25 24 22 42 42 H 1.09005 * 109.41371 * 257.82324 * 27 26 20 43 43 H 1.08995 * 109.48388 * 137.93481 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6162 -2.1914 -0.0011 12 6 6.3812 -3.5165 -0.0017 13 7 7.8216 -3.2489 -0.0011 14 6 8.6973 -4.2733 -0.0010 15 8 8.2929 -5.4167 -0.0019 16 6 10.1789 -3.9980 -0.0009 17 1 10.4464 -3.4264 -0.8897 18 6 10.5577 -3.2056 1.2569 19 8 11.9440 -2.8713 1.1784 20 6 12.8205 -3.8637 0.8746 21 6 14.1705 -3.6613 1.1422 22 6 15.0935 -4.6453 0.8433 23 9 16.4038 -4.4457 1.1049 24 6 14.6733 -5.8367 0.2751 25 6 13.3335 -6.0394 0.0103 26 6 12.4043 -5.0568 0.3102 27 6 10.9496 -5.3205 0.0133 28 1 -0.4850 0.8400 0.0004 29 1 3.8645 -0.3622 0.0030 30 1 3.8489 -3.0424 0.8891 31 1 3.8483 -3.0427 -0.8909 32 1 5.8796 -1.6199 -0.8910 33 1 5.8796 -1.6200 0.8890 34 1 6.1179 -4.0885 0.8880 35 1 6.1178 -4.0877 -0.8919 36 1 8.1449 -2.3343 0.0000 37 1 9.9626 -2.2939 1.3094 38 1 10.3763 -3.8144 2.1427 39 1 14.4982 -2.7324 1.5850 40 1 15.3931 -6.6069 0.0403 41 1 13.0082 -6.9692 -0.4324 42 1 10.5355 -5.9734 0.7818 43 1 10.8589 -5.8036 -0.9596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158046300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:55 Heat of formation + Delta-G solvation = -114.248201 kcal Electronic energy + Delta-G solvation = -25600.846145 eV Core-core repulsion = 21559.629984 eV Total energy + Delta-G solvation = -4041.216161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.97283 -42.07766 -40.57958 -38.38771 -37.66608 -36.01738 -35.27344 -33.89072 -32.14053 -31.52750 -31.07631 -27.33614 -26.70746 -25.41845 -24.09585 -23.76855 -22.68897 -22.09579 -20.81308 -19.65883 -19.42052 -18.59678 -17.98447 -17.21401 -17.09466 -16.82987 -16.68300 -16.44181 -16.32038 -16.07295 -15.80111 -15.72182 -15.36579 -14.89493 -14.80435 -14.63368 -14.43844 -14.20424 -13.98315 -13.77548 -13.75358 -12.87926 -12.76031 -12.66104 -12.53752 -12.45513 -12.31352 -12.08597 -12.00005 -11.92941 -11.81273 -11.71182 -10.97631 -10.96708 -10.15401 -9.82879 -9.31352 -9.29399 -8.03116 -5.38060 0.02510 0.20668 1.38603 1.44072 1.47911 1.51437 1.93763 2.11364 2.49332 2.49431 3.28161 3.30406 3.36688 3.46250 3.54864 3.58560 3.74273 3.89686 4.00448 4.09214 4.11001 4.24342 4.24781 4.30800 4.39299 4.44548 4.49929 4.72776 4.73155 4.84574 4.89667 4.90448 5.00466 5.01078 5.14933 5.25156 5.30123 5.33764 5.38540 5.64976 5.74941 6.20402 6.23941 6.47069 7.07664 7.14897 7.82415 8.02942 9.18311 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031396 B = 0.001826 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.630321 B =15332.988612 C =16105.645506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.244 1.244 7 C -0.243 4.243 8 H 0.053 0.947 9 N -0.758 5.758 10 C 0.152 3.848 11 C -0.123 4.123 12 C 0.130 3.870 13 N -0.713 5.713 14 C 0.524 3.476 15 O -0.573 6.573 16 C -0.138 4.138 17 H 0.131 0.869 18 C 0.071 3.929 19 O -0.312 6.312 20 C 0.145 3.855 21 C -0.195 4.195 22 C 0.115 3.885 23 F -0.142 7.142 24 C -0.181 4.181 25 C -0.052 4.052 26 C -0.168 4.168 27 C -0.057 4.057 28 H 0.258 0.742 29 H 0.369 0.631 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.417 0.583 37 H 0.141 0.859 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.084 0.916 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.063 -9.040 0.748 36.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.168 1.168 7 C -0.374 4.374 8 H 0.071 0.929 9 N -0.404 5.404 10 C 0.026 3.974 11 C -0.161 4.161 12 C 0.006 3.994 13 N -0.366 5.366 14 C 0.310 3.690 15 O -0.452 6.452 16 C -0.160 4.160 17 H 0.148 0.852 18 C -0.004 4.004 19 O -0.226 6.226 20 C 0.099 3.901 21 C -0.214 4.214 22 C 0.096 3.904 23 F -0.121 7.121 24 C -0.200 4.200 25 C -0.070 4.070 26 C -0.169 4.169 27 C -0.094 4.094 28 H 0.067 0.933 29 H 0.203 0.797 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.255 0.745 37 H 0.158 0.842 38 H 0.093 0.907 39 H 0.165 0.835 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.102 0.898 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 34.644 -9.748 0.801 35.998 hybrid contribution -0.099 1.217 0.028 1.222 sum 34.545 -8.530 0.829 35.592 Atomic orbital electron populations 1.69906 1.07369 1.26854 1.59394 1.25635 0.96238 1.01739 1.02310 0.85300 0.78781 0.78805 0.78209 1.20263 1.22421 1.16850 1.19053 0.82933 0.93489 1.41878 0.92939 1.42650 1.02404 1.04272 1.91103 1.20678 0.90804 0.87500 0.98444 1.21774 0.93243 0.97075 1.04049 1.21115 0.79159 0.96954 1.02190 1.45928 1.06181 1.10165 1.74308 1.20478 0.88462 0.84679 0.75352 1.90732 1.80696 1.22922 1.50886 1.21983 0.91144 1.00130 1.02710 0.85157 1.23163 0.78970 1.02343 0.95951 1.86035 1.17550 1.33755 1.85224 1.18417 0.89125 0.87971 0.94545 1.20532 0.90865 1.01836 1.08154 1.17455 0.77547 0.95378 1.00029 1.91501 1.33132 1.95501 1.91968 1.21296 0.97779 0.97201 1.03697 1.21053 0.90989 0.98927 0.96054 1.20026 0.97127 0.94976 1.04800 1.20286 0.88709 0.95933 1.04504 0.93292 0.79748 0.95783 0.95729 0.89891 0.89806 0.91765 0.91921 0.74529 0.84178 0.90733 0.83523 0.82536 0.82193 0.89803 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.96 13.97 21.65 0.30 -62.66 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.96 43.94 27.74 68.60 1.90 45.84 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.24 -9.69 6.52 99.48 0.65 -9.04 16 7 C -0.24 -13.78 10.47 84.03 0.88 -12.90 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 9 N -0.76 -33.91 5.41 -343.44 -1.86 -35.77 16 10 C 0.15 5.32 6.26 86.38 0.54 5.86 16 11 C -0.12 -2.80 5.44 30.60 0.17 -2.63 16 12 C 0.13 2.66 5.67 86.38 0.49 3.15 16 13 N -0.71 -10.56 5.44 -463.06 -2.52 -13.08 16 14 C 0.52 9.15 7.16 87.66 0.63 9.78 16 15 O -0.57 -15.10 15.80 -3.04 -0.05 -15.14 16 16 C -0.14 -1.63 2.76 -11.38 -0.03 -1.66 16 17 H 0.13 1.17 8.14 -2.38 -0.02 1.16 16 18 C 0.07 0.73 6.26 72.12 0.45 1.18 16 19 O -0.31 -4.52 10.27 -91.78 -0.94 -5.46 16 20 C 0.14 2.23 6.47 22.52 0.15 2.37 16 21 C -0.19 -3.03 9.92 22.47 0.22 -2.80 16 22 C 0.12 1.75 7.30 22.32 0.16 1.92 16 23 F -0.14 -2.41 17.27 44.97 0.78 -1.63 16 24 C -0.18 -2.13 10.03 22.30 0.22 -1.91 16 25 C -0.05 -0.58 9.66 22.30 0.22 -0.36 16 26 C -0.17 -2.27 5.75 -19.73 -0.11 -2.38 16 27 C -0.06 -0.75 4.66 29.90 0.14 -0.61 16 28 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.37 15.19 5.53 -92.71 -0.51 14.68 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.42 3.53 7.91 -92.71 -0.73 2.80 16 37 H 0.14 0.74 7.53 -2.39 -0.02 0.72 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.08 1.30 7.70 -2.38 -0.02 1.28 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -75.19 362.40 1.95 -73.24 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.26 Total: 19.14 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 4.59 Total: -4.49 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.07 Total: -111.50 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.99 Total: -20.60 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.78 Total: -1.63 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Total: -75.19 1.95 -73.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158046300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.007 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds