Wall clock time and date at job start Tue Mar 31 2020 13:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00449 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00516 * 3 2 1 6 6 H 1.48504 * 109.46915 * 150.00370 * 3 2 1 7 7 C 1.38815 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99484 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99917 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46990 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46965 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47425 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00266 * 180.02562 * 13 12 11 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 H 1.08999 * 109.69380 * 60.56196 * 16 14 13 18 18 C 1.53406 * 109.70070 * 299.99653 * 16 14 13 19 19 O 1.42820 * 108.38876 * 175.58974 * 18 16 14 20 20 C 1.35851 * 117.87872 * 49.12625 * 19 18 16 21 21 C 1.39104 * 118.48578 * 162.88141 * 20 19 18 22 22 C 1.38184 * 120.20056 * 179.76123 * 21 20 19 23 23 F 1.35098 * 120.04404 * 180.02562 * 22 21 20 24 24 C 1.38514 * 119.90394 * 359.97438 * 22 21 20 25 25 C 1.38058 * 119.95978 * 0.08522 * 24 22 21 26 26 C 1.38398 * 121.80149 * 342.81010 * 20 19 18 27 27 C 1.50782 * 121.39096 * 0.54654 * 26 20 19 28 28 H 0.96997 * 120.00284 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00096 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47042 * 59.99806 * 10 9 7 31 31 H 1.09004 * 109.46923 * 300.00219 * 10 9 7 32 32 H 1.09000 * 109.47058 * 60.00748 * 11 10 9 33 33 H 1.08987 * 109.47609 * 299.99931 * 11 10 9 34 34 H 1.09004 * 109.46930 * 60.00393 * 12 11 10 35 35 H 1.09000 * 109.47312 * 300.00337 * 12 11 10 36 36 H 0.96999 * 119.99691 * 359.97438 * 13 12 11 37 37 H 1.09004 * 109.68067 * 295.31590 * 18 16 14 38 38 H 1.09001 * 109.67777 * 55.82950 * 18 16 14 39 39 H 1.07998 * 119.89519 * 359.76369 * 21 20 19 40 40 H 1.08008 * 120.01882 * 180.02562 * 24 22 21 41 41 H 1.07997 * 119.82879 * 179.97438 * 25 24 22 42 42 H 1.08998 * 109.43930 * 222.00083 * 27 26 20 43 43 H 1.09007 * 109.43417 * 102.13165 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 6 1.8288 -6.1447 -0.0005 13 7 0.8769 -7.2583 -0.0005 14 6 1.3262 -8.5289 -0.0005 15 8 2.5185 -8.7506 0.0045 16 6 0.3468 -9.6744 0.0000 17 1 -0.2756 -9.6259 -0.8934 18 6 -0.5375 -9.5980 1.2512 19 8 -1.5197 -10.6319 1.1725 20 6 -1.0964 -11.8892 0.8798 21 6 -1.9486 -12.9554 1.1482 22 6 -1.5561 -14.2486 0.8599 23 9 -2.3864 -15.2817 1.1214 24 6 -0.3105 -14.4839 0.3016 25 6 0.5368 -13.4268 0.0358 26 6 0.1489 -12.1290 0.3257 27 6 1.1067 -11.0029 0.0292 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0002 30 1 2.6848 -3.7145 0.8895 31 1 2.6848 -3.7145 -0.8905 32 1 0.4369 -4.7622 -0.8897 33 1 0.4375 -4.7618 0.8902 34 1 2.4561 -6.2025 0.8891 35 1 2.4549 -6.2024 -0.8909 36 1 -0.0767 -7.0810 0.0002 37 1 0.0741 -9.7397 2.1423 38 1 -1.0294 -8.6262 1.2943 39 1 -2.9200 -12.7719 1.5831 40 1 -0.0019 -15.4939 0.0751 41 1 1.5077 -13.6128 -0.3991 42 1 1.5778 -11.1727 -0.9390 43 1 1.8732 -10.9655 0.8033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158046304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:58 Heat of formation + Delta-G solvation = -117.149140 kcal Electronic energy + Delta-G solvation = -25528.871199 eV Core-core repulsion = 21487.529244 eV Total energy + Delta-G solvation = -4041.341956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.96874 -42.07631 -40.57650 -38.38490 -37.55159 -35.95658 -35.27124 -33.76932 -31.91438 -31.51748 -30.84424 -27.21308 -26.70228 -25.51464 -24.25245 -23.87018 -22.58103 -22.07919 -20.77113 -19.41701 -19.22128 -18.55243 -17.98343 -17.21713 -17.08658 -16.81881 -16.67494 -16.45955 -16.31365 -16.06967 -15.79174 -15.55349 -15.28809 -15.04795 -14.83357 -14.59851 -14.37938 -14.19822 -13.96984 -13.71371 -13.30808 -12.82117 -12.75460 -12.67185 -12.51406 -12.42187 -12.31218 -12.07652 -12.03932 -11.92794 -11.80949 -11.69726 -10.96230 -10.94362 -10.15228 -9.82450 -9.28998 -9.01442 -7.96769 -5.25666 0.02966 0.21165 1.47750 1.48231 1.49533 1.58115 1.94364 2.11754 2.49766 2.56330 3.30750 3.37027 3.37345 3.47157 3.56661 3.74350 3.77424 3.90522 4.00663 4.09868 4.11595 4.27043 4.29598 4.39092 4.42453 4.46773 4.52008 4.74438 4.74869 4.84872 4.89692 4.90210 5.00859 5.01493 5.15337 5.28143 5.32972 5.34267 5.39249 5.49259 5.65553 6.24282 6.26172 6.46852 7.14008 7.32794 8.08054 8.31281 9.26595 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.039968 B = 0.001691 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.394339 B =16551.676497 C =17149.605022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.119 4.119 12 C 0.133 3.867 13 N -0.714 5.714 14 C 0.524 3.476 15 O -0.573 6.573 16 C -0.139 4.139 17 H 0.130 0.870 18 C 0.071 3.929 19 O -0.313 6.313 20 C 0.144 3.856 21 C -0.195 4.195 22 C 0.115 3.885 23 F -0.142 7.142 24 C -0.181 4.181 25 C -0.052 4.052 26 C -0.168 4.168 27 C -0.056 4.056 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.416 0.584 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.096 0.904 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 -31.038 0.755 31.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.382 4.382 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.158 4.158 12 C 0.008 3.992 13 N -0.367 5.367 14 C 0.311 3.689 15 O -0.452 6.452 16 C -0.160 4.160 17 H 0.148 0.852 18 C -0.004 4.004 19 O -0.226 6.226 20 C 0.099 3.901 21 C -0.214 4.214 22 C 0.096 3.904 23 F -0.121 7.121 24 C -0.199 4.199 25 C -0.070 4.070 26 C -0.169 4.169 27 C -0.094 4.094 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.253 0.747 37 H 0.093 0.907 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.175 0.825 41 H 0.179 0.821 42 H 0.115 0.885 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.952 -31.044 0.818 31.116 hybrid contribution -0.451 1.108 0.013 1.197 sum -2.404 -29.935 0.830 30.043 Atomic orbital electron populations 1.69800 1.06530 1.26174 1.59329 1.25573 0.96459 1.01116 1.03536 0.85137 0.77712 0.79414 0.77472 1.21353 1.22050 1.19514 1.19653 0.91580 0.85469 1.41502 0.90714 1.42538 1.05736 1.01161 1.89542 1.20697 0.94160 0.84804 0.97969 1.21709 0.98474 0.92211 1.03363 1.21113 0.91661 0.84250 1.02144 1.45966 1.11408 1.05036 1.74255 1.20476 0.89021 0.84079 0.75344 1.90720 1.18374 1.85139 1.50942 1.21981 0.97550 0.93759 1.02700 0.85243 1.23152 0.90203 0.91000 0.96084 1.86039 1.36399 1.14688 1.85494 1.18434 0.92586 0.84475 0.94628 1.20532 1.02974 0.89694 1.08223 1.17448 0.89456 0.83409 1.00073 1.91500 1.71434 1.57199 1.91952 1.21295 0.92863 1.02037 1.03734 1.21050 1.00126 0.89796 0.95993 1.20026 0.95262 0.96746 1.04896 1.20281 0.95762 0.88771 1.04544 0.93916 0.79218 0.95999 0.96068 0.90765 0.90552 0.91654 0.91860 0.74658 0.90654 0.84393 0.83569 0.82467 0.82116 0.88509 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.75 -36.96 5.60 -343.45 -1.92 -38.88 16 10 C 0.15 5.65 6.26 86.38 0.54 6.19 16 11 C -0.12 -3.19 5.44 30.59 0.17 -3.02 16 12 C 0.13 3.02 5.67 86.38 0.49 3.51 16 13 N -0.71 -12.28 5.43 -463.06 -2.52 -14.79 16 14 C 0.52 10.00 7.16 87.66 0.63 10.62 16 15 O -0.57 -15.69 15.80 -3.01 -0.05 -15.73 16 16 C -0.14 -1.84 2.76 -11.38 -0.03 -1.87 16 17 H 0.13 1.38 8.14 -2.39 -0.02 1.37 16 18 C 0.07 0.85 6.25 72.12 0.45 1.30 16 19 O -0.31 -4.98 10.27 -91.88 -0.94 -5.93 16 20 C 0.14 2.37 6.47 22.52 0.15 2.52 16 21 C -0.19 -3.21 9.91 22.47 0.22 -2.99 16 22 C 0.12 1.84 7.30 22.32 0.16 2.00 16 23 F -0.14 -2.49 17.27 44.97 0.78 -1.72 16 24 C -0.18 -2.23 10.03 22.29 0.22 -2.00 16 25 C -0.05 -0.60 9.66 22.29 0.22 -0.38 16 26 C -0.17 -2.41 5.75 -19.73 -0.11 -2.53 16 27 C -0.06 -0.80 4.66 29.90 0.14 -0.66 16 28 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.38 19.46 7.67 -92.71 -0.71 18.75 16 30 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.42 4.81 7.87 -92.71 -0.73 4.08 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.14 1.04 7.49 -2.39 -0.02 1.02 16 39 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.37 7.71 -2.38 -0.02 1.35 16 Total: -1.00 -70.54 365.45 1.81 -68.73 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.39 Total: 22.77 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 4.55 Total: -4.11 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -4.16 Total: -111.64 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.99 Total: -21.66 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -70.54 1.81 -68.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158046304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.416 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds