Wall clock time and date at job start Tue Mar 31 2020 13:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47165 * 299.99432 * 3 2 1 6 6 H 1.48494 * 109.47322 * 59.99630 * 3 2 1 7 7 C 1.38813 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00344 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47163 * 180.02562 * 10 9 7 12 12 C 1.53010 * 109.47028 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47126 * 180.02562 * 12 11 10 14 14 C 1.34773 * 119.99838 * 180.02562 * 13 12 11 15 15 O 1.21271 * 120.00351 * 5.08626 * 14 13 12 16 16 C 1.50710 * 119.99536 * 185.08899 * 14 13 12 17 17 H 1.08996 * 109.39591 * 335.67578 * 16 14 13 18 18 C 1.53062 * 109.42721 * 215.79377 * 16 14 13 19 19 C 1.53410 * 108.31615 * 191.73158 * 18 16 14 20 20 O 1.42830 * 108.36616 * 64.65105 * 19 18 16 21 21 C 1.35900 * 117.84481 * 310.73733 * 20 19 18 22 22 C 1.39338 * 118.49418 * 197.23244 * 21 20 19 23 23 F 1.35098 * 119.91582 * 0.44870 * 22 21 20 24 24 C 1.38139 * 120.16925 * 180.18026 * 22 21 20 25 25 C 1.38298 * 119.92950 * 0.55276 * 24 22 21 26 26 C 1.38076 * 119.99944 * 359.34779 * 25 24 22 27 27 C 1.38282 * 121.80958 * 17.50989 * 21 20 19 28 28 H 0.96990 * 119.99875 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99578 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46899 * 60.00224 * 10 9 7 31 31 H 1.08998 * 109.47486 * 300.00476 * 10 9 7 32 32 H 1.08998 * 109.47371 * 60.00655 * 11 10 9 33 33 H 1.08997 * 109.47581 * 300.00109 * 11 10 9 34 34 H 1.08998 * 109.46576 * 60.00087 * 12 11 10 35 35 H 1.08997 * 109.46962 * 300.00407 * 12 11 10 36 36 H 0.97004 * 119.99768 * 0.02562 * 13 12 11 37 37 H 1.09005 * 109.69784 * 72.03094 * 18 16 14 38 38 H 1.08996 * 109.72993 * 311.45857 * 18 16 14 39 39 H 1.08996 * 109.68719 * 304.93438 * 19 18 16 40 40 H 1.08994 * 109.68493 * 184.36482 * 19 18 16 41 41 H 1.08005 * 120.03521 * 180.29604 * 24 22 21 42 42 H 1.08002 * 120.00036 * 179.63034 * 25 24 22 43 43 H 1.08006 * 119.82079 * 180.25887 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3258 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0641 -4.8197 -0.0001 12 6 1.8292 -6.1447 0.0005 13 7 0.8773 -7.2583 -0.0007 14 6 1.3266 -8.5289 0.0001 15 8 2.5149 -8.7518 0.0950 16 6 0.3523 -9.6727 -0.1169 17 1 -0.6280 -9.3505 0.2341 18 6 0.8390 -10.8455 0.7377 19 6 0.0066 -12.0827 0.3773 20 8 0.2770 -12.4267 -0.9823 21 6 0.2127 -11.4377 -1.9122 22 6 0.1091 -11.7938 -3.2553 23 9 0.0658 -13.0980 -3.6052 24 6 0.0451 -10.8167 -4.2296 25 6 0.0954 -9.4816 -3.8723 26 6 0.1959 -9.1264 -2.5418 27 6 0.2530 -10.1014 -1.5589 28 1 -0.4849 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 2.6849 -3.7144 0.8906 31 1 2.6850 -3.7145 -0.8894 32 1 0.4378 -4.7618 -0.8903 33 1 0.4370 -4.7622 0.8896 34 1 2.4552 -6.2023 0.8910 35 1 2.4565 -6.2024 -0.8889 36 1 -0.0764 -7.0810 -0.0021 37 1 0.7081 -10.6098 1.7938 38 1 1.8918 -11.0386 0.5321 39 1 -1.0536 -11.8591 0.4955 40 1 0.2820 -12.9128 1.0277 41 1 -0.0399 -11.0951 -5.2697 42 1 0.0515 -8.7168 -4.6336 43 1 0.2308 -8.0828 -2.2657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162229211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:33 Heat of formation + Delta-G solvation = -91.265108 kcal Electronic energy + Delta-G solvation = -26299.429835 eV Core-core repulsion = 22259.210295 eV Total energy + Delta-G solvation = -4040.219540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.07013 -41.42448 -39.52930 -37.92914 -36.18840 -34.52354 -34.42670 -32.03635 -31.23410 -30.25230 -29.68249 -27.10620 -25.14902 -24.35207 -23.14763 -22.52488 -21.36541 -21.07986 -20.11100 -18.51684 -17.78737 -17.42606 -17.13695 -16.85357 -16.29234 -16.00710 -15.86342 -15.33789 -15.25806 -14.98563 -14.66874 -14.59709 -14.08027 -13.78729 -13.61454 -13.31307 -13.30277 -13.05587 -12.71574 -12.54775 -12.44357 -12.05027 -11.72922 -11.48000 -11.36075 -11.15996 -11.02875 -10.97387 -10.83154 -10.68699 -10.15532 -10.00600 -9.74948 -9.19626 -9.11306 -8.92553 -8.58221 -6.97908 -5.81383 -3.10432 0.67199 0.84343 2.34846 2.70776 2.89906 3.21324 3.40893 3.46885 3.48980 3.79896 4.00069 4.17116 4.27292 4.45340 4.55422 4.60120 4.64936 4.77035 4.81125 4.91463 4.97697 5.04396 5.10897 5.22580 5.34675 5.50376 5.53335 5.54538 5.64103 5.69762 5.81859 5.89603 5.98212 5.99447 6.12117 6.25613 6.26103 6.31861 6.72742 6.76871 6.89814 7.29164 7.67022 7.99309 8.37606 9.48910 10.05430 10.39942 11.41682 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.002114 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.341922 B =13242.212079 C =13961.634847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.121 3.879 13 N -0.726 5.726 14 C 0.523 3.477 15 O -0.530 6.530 16 C -0.063 4.063 17 H 0.107 0.893 18 C -0.149 4.149 19 C 0.063 3.937 20 O -0.307 6.307 21 C 0.111 3.889 22 C 0.070 3.930 23 F -0.132 7.132 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.091 4.091 27 C -0.125 4.125 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.258 -26.636 -2.909 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.003 4.003 13 N -0.378 5.378 14 C 0.308 3.692 15 O -0.405 6.405 16 C -0.085 4.085 17 H 0.124 0.876 18 C -0.187 4.187 19 C -0.012 4.012 20 O -0.221 6.221 21 C 0.064 3.936 22 C 0.050 3.950 23 F -0.111 7.111 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.109 4.109 27 C -0.126 4.126 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.187 -26.910 -2.878 27.250 hybrid contribution -0.427 1.119 0.087 1.201 sum -3.614 -25.791 -2.791 26.192 Atomic orbital electron populations 1.69665 1.05140 1.25617 1.57887 1.24759 0.95568 0.97791 1.02965 0.86096 0.78822 0.83952 0.77212 1.20494 1.21808 1.21824 1.19286 0.91137 0.84086 1.42576 0.91034 1.42341 1.05862 0.99994 1.89620 1.20516 0.93249 0.85181 0.98240 1.21950 0.99585 0.93264 1.02773 1.21412 0.91723 0.84490 1.02650 1.46189 1.10865 1.05660 1.75044 1.20111 0.89215 0.83585 0.76321 1.90721 1.16822 1.84486 1.48519 1.20165 1.00161 0.95316 0.92812 0.87551 1.22204 1.02579 0.93353 1.00554 1.23073 0.99434 0.98641 0.80009 1.86064 1.85469 1.33428 1.17156 1.18551 0.99497 0.87508 0.88011 1.17115 1.08536 0.79020 0.90335 1.91500 1.94172 1.33035 1.92356 1.21055 1.01225 0.92295 0.99198 1.20924 1.00983 0.95422 0.96311 1.21130 0.97855 0.99482 0.92419 1.19190 1.06793 0.91663 0.94973 0.93528 0.78305 0.96051 0.96049 0.91239 0.91239 0.91146 0.91258 0.76379 0.88886 0.88481 0.91270 0.86604 0.83866 0.84312 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.24 5.60 -59.91 -0.34 -18.58 16 10 C 0.16 3.00 6.26 -4.05 -0.03 2.98 16 11 C -0.14 -1.94 5.44 -26.73 -0.15 -2.09 16 12 C 0.12 1.50 5.68 -4.04 -0.02 1.48 16 13 N -0.73 -7.28 4.84 -60.29 -0.29 -7.57 16 14 C 0.52 5.93 5.79 -10.98 -0.06 5.87 16 15 O -0.53 -8.22 16.07 5.57 0.09 -8.13 16 16 C -0.06 -0.54 2.71 -92.86 -0.25 -0.79 16 17 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 18 C -0.15 -1.17 5.35 -26.49 -0.14 -1.31 16 19 C 0.06 0.43 7.03 37.37 0.26 0.69 16 20 O -0.31 -3.24 10.09 -19.43 -0.20 -3.43 16 21 C 0.11 1.20 6.48 -39.16 -0.25 0.95 16 22 C 0.07 0.75 7.30 -39.21 -0.29 0.46 16 23 F -0.13 -1.54 17.05 2.25 0.04 -1.51 16 24 C -0.12 -1.03 10.02 -39.60 -0.40 -1.42 16 25 C -0.12 -0.98 10.04 -39.62 -0.40 -1.38 16 26 C -0.09 -0.84 9.10 -39.52 -0.36 -1.20 16 27 C -0.12 -1.23 5.43 -104.45 -0.57 -1.79 16 28 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.38 9.89 7.67 -40.82 -0.31 9.58 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.40 2.98 8.43 -40.82 -0.34 2.63 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 1.00 7.46 -51.93 -0.39 0.61 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.15 6.79 -52.48 -0.36 0.79 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -34.46 363.66 -8.43 -42.88 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.02 Total: 5.77 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.90 Total: -4.91 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.10 Total: -53.37 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.11 Total: -11.57 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.46 -8.43 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162229211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.381 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds