Wall clock time and date at job start Tue Mar 31 2020 13:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47165 * 299.99432 * 3 2 1 6 6 H 1.48494 * 109.47322 * 59.99630 * 3 2 1 7 7 C 1.38813 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00344 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47163 * 180.02562 * 10 9 7 12 12 C 1.53010 * 109.47028 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47126 * 180.02562 * 12 11 10 14 14 C 1.34773 * 119.99838 * 180.02562 * 13 12 11 15 15 O 1.21271 * 120.00351 * 5.08626 * 14 13 12 16 16 C 1.50710 * 119.99536 * 185.08899 * 14 13 12 17 17 H 1.08996 * 109.39591 * 335.67578 * 16 14 13 18 18 C 1.53062 * 109.42721 * 215.79377 * 16 14 13 19 19 C 1.53410 * 108.31615 * 191.73158 * 18 16 14 20 20 O 1.42830 * 108.36616 * 64.65105 * 19 18 16 21 21 C 1.35900 * 117.84481 * 310.73733 * 20 19 18 22 22 C 1.39338 * 118.49418 * 197.23244 * 21 20 19 23 23 F 1.35098 * 119.91582 * 0.44870 * 22 21 20 24 24 C 1.38139 * 120.16925 * 180.18026 * 22 21 20 25 25 C 1.38298 * 119.92950 * 0.55276 * 24 22 21 26 26 C 1.38076 * 119.99944 * 359.34779 * 25 24 22 27 27 C 1.38282 * 121.80958 * 17.50989 * 21 20 19 28 28 H 0.96990 * 119.99875 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99578 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46899 * 60.00224 * 10 9 7 31 31 H 1.08998 * 109.47486 * 300.00476 * 10 9 7 32 32 H 1.08998 * 109.47371 * 60.00655 * 11 10 9 33 33 H 1.08997 * 109.47581 * 300.00109 * 11 10 9 34 34 H 1.08998 * 109.46576 * 60.00087 * 12 11 10 35 35 H 1.08997 * 109.46962 * 300.00407 * 12 11 10 36 36 H 0.97004 * 119.99768 * 0.02562 * 13 12 11 37 37 H 1.09005 * 109.69784 * 72.03094 * 18 16 14 38 38 H 1.08996 * 109.72993 * 311.45857 * 18 16 14 39 39 H 1.08996 * 109.68719 * 304.93438 * 19 18 16 40 40 H 1.08994 * 109.68493 * 184.36482 * 19 18 16 41 41 H 1.08005 * 120.03521 * 180.29604 * 24 22 21 42 42 H 1.08002 * 120.00036 * 179.63034 * 25 24 22 43 43 H 1.08006 * 119.82079 * 180.25887 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3258 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0641 -4.8197 -0.0001 12 6 1.8292 -6.1447 0.0005 13 7 0.8773 -7.2583 -0.0007 14 6 1.3266 -8.5289 0.0001 15 8 2.5149 -8.7518 0.0950 16 6 0.3523 -9.6727 -0.1169 17 1 -0.6280 -9.3505 0.2341 18 6 0.8390 -10.8455 0.7377 19 6 0.0066 -12.0827 0.3773 20 8 0.2770 -12.4267 -0.9823 21 6 0.2127 -11.4377 -1.9122 22 6 0.1091 -11.7938 -3.2553 23 9 0.0658 -13.0980 -3.6052 24 6 0.0451 -10.8167 -4.2296 25 6 0.0954 -9.4816 -3.8723 26 6 0.1959 -9.1264 -2.5418 27 6 0.2530 -10.1014 -1.5589 28 1 -0.4849 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 2.6849 -3.7144 0.8906 31 1 2.6850 -3.7145 -0.8894 32 1 0.4378 -4.7618 -0.8903 33 1 0.4370 -4.7622 0.8896 34 1 2.4552 -6.2023 0.8910 35 1 2.4565 -6.2024 -0.8889 36 1 -0.0764 -7.0810 -0.0021 37 1 0.7081 -10.6098 1.7938 38 1 1.8918 -11.0386 0.5321 39 1 -1.0536 -11.8591 0.4955 40 1 0.2820 -12.9128 1.0277 41 1 -0.0399 -11.0951 -5.2697 42 1 0.0515 -8.7168 -4.6336 43 1 0.2308 -8.0828 -2.2657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162229211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:32 Heat of formation + Delta-G solvation = -114.423319 kcal Electronic energy + Delta-G solvation = -26300.434050 eV Core-core repulsion = 22259.210295 eV Total energy + Delta-G solvation = -4041.223755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.88185 -42.15176 -40.41644 -38.59484 -37.54933 -35.94414 -35.26242 -33.71744 -31.91240 -31.26445 -30.93959 -28.03683 -26.58038 -25.06863 -24.45149 -23.59501 -22.58316 -21.99331 -20.92475 -19.34857 -19.06917 -18.47533 -18.08895 -17.77085 -17.22573 -16.93841 -16.80060 -16.46945 -16.21024 -15.97193 -15.62622 -15.50639 -15.29975 -15.24017 -14.77434 -14.60873 -14.23575 -13.96781 -13.79639 -13.36582 -13.29660 -13.15704 -12.84830 -12.75498 -12.58461 -12.40881 -12.15151 -12.05108 -12.03543 -11.94316 -11.79628 -11.78154 -11.00848 -10.95434 -10.15545 -9.82712 -9.29284 -9.01404 -7.96929 -5.25626 -0.02834 0.13955 1.46345 1.48385 1.48495 1.58825 1.98987 2.15908 2.48913 2.56514 3.08553 3.33608 3.37346 3.52744 3.64082 3.76961 3.78755 3.97251 4.04554 4.10289 4.13601 4.24715 4.30099 4.35051 4.39674 4.47229 4.57757 4.73441 4.74783 4.76700 4.84363 4.90401 4.97926 5.05543 5.16042 5.28384 5.31850 5.32967 5.39213 5.49598 5.62152 6.23487 6.26434 6.47259 7.14437 7.33006 8.07932 8.31409 9.26728 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.002114 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.341922 B =13242.212079 C =13961.634847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.132 3.868 13 N -0.712 5.712 14 C 0.525 3.475 15 O -0.576 6.576 16 C -0.059 4.059 17 H 0.141 0.859 18 C -0.147 4.147 19 C 0.060 3.940 20 O -0.329 6.329 21 C 0.097 3.903 22 C 0.043 3.957 23 F -0.144 7.144 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.098 4.098 27 C -0.134 4.134 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.020 0.980 31 H 0.022 0.978 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.418 0.582 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.137 0.863 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 -26.754 -2.876 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.008 3.992 13 N -0.364 5.364 14 C 0.312 3.688 15 O -0.455 6.455 16 C -0.079 4.079 17 H 0.159 0.841 18 C -0.185 4.185 19 C -0.014 4.014 20 O -0.244 6.244 21 C 0.050 3.950 22 C 0.023 3.977 23 F -0.123 7.123 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.116 4.116 27 C -0.135 4.135 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.255 0.745 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.154 0.846 41 H 0.183 0.817 42 H 0.180 0.820 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.743 -27.053 -2.842 27.459 hybrid contribution -0.217 1.108 0.077 1.131 sum -3.960 -25.946 -2.765 26.391 Atomic orbital electron populations 1.69800 1.06497 1.26111 1.59453 1.25561 0.96466 1.01076 1.03619 0.85086 0.78197 0.79795 0.76762 1.19216 1.21872 1.21936 1.19664 0.91524 0.85435 1.41261 0.90802 1.42543 1.05764 1.01149 1.89503 1.20685 0.94158 0.84833 0.97909 1.21701 0.98421 0.91982 1.03492 1.21114 0.91714 0.84370 1.02010 1.46007 1.11398 1.04788 1.74256 1.20566 0.88976 0.84216 0.75070 1.90708 1.18987 1.85141 1.50630 1.20235 1.00909 0.94278 0.92524 0.84099 1.22188 1.00938 0.93673 1.01677 1.23358 1.00473 0.98953 0.78605 1.86031 1.85700 1.34054 1.18580 1.18741 0.99957 0.87998 0.88268 1.17494 1.10070 0.78996 0.91113 1.91460 1.94446 1.33900 1.92462 1.21340 1.00000 0.92075 0.99919 1.21238 0.99999 0.95799 0.96601 1.21343 0.97708 0.99713 0.92877 1.19332 1.06967 0.91440 0.95769 0.93894 0.79163 0.96204 0.96031 0.90359 0.90663 0.92040 0.91855 0.74479 0.86760 0.91492 0.89161 0.84574 0.81738 0.81986 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.01 13.06 21.65 0.28 -57.73 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.75 -36.77 5.60 -343.47 -1.92 -38.69 16 10 C 0.15 5.66 6.26 86.38 0.54 6.20 16 11 C -0.12 -3.13 5.44 30.60 0.17 -2.96 16 12 C 0.13 3.09 5.68 86.38 0.49 3.58 16 13 N -0.71 -12.79 4.84 -463.06 -2.24 -15.03 16 14 C 0.53 11.18 5.79 87.66 0.51 11.69 16 15 O -0.58 -17.76 16.07 -3.00 -0.05 -17.81 16 16 C -0.06 -0.89 2.71 -12.24 -0.03 -0.92 16 17 H 0.14 1.14 8.08 -2.39 -0.02 1.12 16 18 C -0.15 -2.10 5.35 30.75 0.16 -1.94 16 19 C 0.06 0.71 7.03 72.12 0.51 1.22 16 20 O -0.33 -6.81 10.09 -92.43 -0.93 -7.74 16 21 C 0.10 2.06 6.48 22.55 0.15 2.20 16 22 C 0.04 0.91 7.30 22.51 0.16 1.08 16 23 F -0.14 -3.41 17.05 44.97 0.77 -2.65 16 24 C -0.11 -1.84 10.02 22.26 0.22 -1.62 16 25 C -0.12 -1.74 10.04 22.25 0.22 -1.52 16 26 C -0.10 -1.65 9.10 22.31 0.20 -1.45 16 27 C -0.13 -2.47 5.43 -19.75 -0.11 -2.57 16 28 H 0.25 14.59 8.31 -92.72 -0.77 13.82 16 29 H 0.38 19.33 7.67 -92.70 -0.71 18.62 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.42 4.94 8.43 -92.71 -0.78 4.15 16 37 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.39 7.46 -2.39 -0.02 1.37 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.14 2.10 6.79 -2.91 -0.02 2.08 16 Total: -1.00 -74.93 363.66 1.99 -72.94 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.44 Total: 22.77 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 4.50 Total: -3.60 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -3.88 Total: -111.45 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.98 Total: -25.55 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.77 Total: -2.65 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.93 1.99 -72.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162229211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.487 kcal (2) G-P(sol) polarization free energy of solvation -74.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds