Wall clock time and date at job start Tue Mar 31 2020 13:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00234 * 2 1 4 4 H 1.48494 * 109.47270 * 239.99940 * 3 2 1 5 5 H 1.48502 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47427 * 119.99608 * 3 2 1 7 7 C 1.38821 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99737 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99719 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99758 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47301 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46946 * 180.02562 * 12 11 10 14 14 C 1.34783 * 119.99790 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00020 * 5.11176 * 14 13 12 16 16 C 1.50696 * 120.00140 * 185.11462 * 14 13 12 17 17 H 1.09004 * 109.43378 * 24.48710 * 16 14 13 18 18 C 1.53066 * 109.43693 * 144.40135 * 16 14 13 19 19 C 1.53413 * 108.29275 * 168.25169 * 18 16 14 20 20 O 1.42823 * 108.37089 * 295.30001 * 19 18 16 21 21 C 1.35890 * 117.86697 * 49.12316 * 20 19 18 22 22 C 1.39342 * 118.49313 * 163.04621 * 21 20 19 23 23 F 1.35105 * 119.90835 * 359.75957 * 22 21 20 24 24 C 1.38133 * 120.17885 * 179.78575 * 22 21 20 25 25 C 1.38302 * 119.92774 * 359.92329 * 24 22 21 26 26 C 1.38074 * 120.00081 * 0.06181 * 25 24 22 27 27 C 1.38280 * 121.81981 * 342.85205 * 21 20 19 28 28 H 0.96996 * 120.00214 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00084 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47310 * 59.99857 * 10 9 7 31 31 H 1.09002 * 109.47192 * 299.99715 * 10 9 7 32 32 H 1.09008 * 109.47003 * 59.99788 * 11 10 9 33 33 H 1.09002 * 109.47063 * 300.00102 * 11 10 9 34 34 H 1.08999 * 109.47069 * 60.00254 * 12 11 10 35 35 H 1.08996 * 109.46915 * 300.00327 * 12 11 10 36 36 H 0.96997 * 120.00696 * 359.97438 * 13 12 11 37 37 H 1.08997 * 109.70497 * 48.55639 * 18 16 14 38 38 H 1.09008 * 109.70232 * 287.95063 * 18 16 14 39 39 H 1.09003 * 109.68634 * 175.57050 * 19 18 16 40 40 H 1.09003 * 109.68174 * 55.01701 * 19 18 16 41 41 H 1.07999 * 120.03679 * 179.64702 * 24 22 21 42 42 H 1.07998 * 120.00121 * 180.02562 * 25 24 22 43 43 H 1.08000 * 119.82232 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0021 12 6 1.8289 -6.1448 0.0026 13 7 0.8769 -7.2583 0.0024 14 6 1.3261 -8.5290 0.0033 15 8 2.5145 -8.7520 0.0979 16 6 0.3519 -9.6727 -0.1133 17 1 -0.5557 -9.3270 -0.6082 18 6 0.9837 -10.7982 -0.9362 19 6 0.1075 -12.0493 -0.7935 20 8 0.1433 -12.4708 0.5707 21 6 -0.0803 -11.5353 1.5306 22 6 -0.4043 -11.9657 2.8156 23 9 -0.4942 -13.2875 3.0807 24 6 -0.6343 -11.0447 3.8191 25 6 -0.5413 -9.6917 3.5484 26 6 -0.2201 -9.2627 2.2759 27 6 0.0095 -10.1814 1.2641 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6841 -3.7142 0.8921 31 1 2.6854 -3.7150 -0.8878 32 1 0.4375 -4.7626 -0.8882 33 1 0.4369 -4.7614 0.8918 34 1 2.4555 -6.2022 0.8927 35 1 2.4556 -6.2028 -0.8873 36 1 -0.0768 -7.0811 0.0023 37 1 1.9864 -11.0075 -0.5636 38 1 1.0348 -10.5030 -1.9843 39 1 0.4935 -12.8429 -1.4333 40 1 -0.9180 -11.8138 -1.0781 41 1 -0.8909 -11.3808 4.8129 42 1 -0.7205 -8.9706 4.3321 43 1 -0.1479 -8.2054 2.0678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162229215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:35 Heat of formation + Delta-G solvation = -114.201503 kcal Electronic energy + Delta-G solvation = -26270.480981 eV Core-core repulsion = 22229.266845 eV Total energy + Delta-G solvation = -4041.214136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.88059 -42.15552 -40.41731 -38.59715 -37.54796 -35.94270 -35.26539 -33.71741 -31.91644 -31.26363 -30.93919 -28.03380 -26.58198 -25.07475 -24.44879 -23.58480 -22.58232 -22.00855 -20.92293 -19.33433 -19.07233 -18.47759 -18.10924 -17.76939 -17.22920 -16.91580 -16.80953 -16.47297 -16.19974 -15.97078 -15.64409 -15.52002 -15.29834 -15.23413 -14.82703 -14.55053 -14.23288 -13.96810 -13.79496 -13.36654 -13.28949 -13.16562 -12.78790 -12.75178 -12.60052 -12.42364 -12.16547 -12.09692 -12.03221 -11.94772 -11.79673 -11.78526 -11.01113 -10.93261 -10.16083 -9.82697 -9.29243 -9.01350 -7.96387 -5.25246 -0.02954 0.14058 1.46055 1.48291 1.50880 1.57050 1.98493 2.15523 2.49005 2.56924 3.08385 3.33677 3.37468 3.51959 3.63842 3.76914 3.78812 3.96678 4.04212 4.10196 4.13167 4.24616 4.30093 4.34961 4.39639 4.47354 4.57624 4.73818 4.74453 4.76628 4.84190 4.90209 4.97452 5.05180 5.15812 5.28206 5.31449 5.32884 5.39041 5.49175 5.62080 6.23413 6.26527 6.46655 7.13944 7.33179 8.08218 8.31809 9.26817 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024676 B = 0.002086 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.416698 B =13418.195051 C =14119.894871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.746 5.746 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.132 3.868 13 N -0.712 5.712 14 C 0.525 3.475 15 O -0.575 6.575 16 C -0.059 4.059 17 H 0.141 0.859 18 C -0.147 4.147 19 C 0.060 3.940 20 O -0.329 6.329 21 C 0.097 3.903 22 C 0.043 3.957 23 F -0.144 7.144 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.098 4.098 27 C -0.135 4.135 28 H 0.253 0.747 29 H 0.376 0.624 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.417 0.583 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 -26.799 1.488 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.008 3.992 13 N -0.365 5.365 14 C 0.312 3.688 15 O -0.454 6.454 16 C -0.080 4.080 17 H 0.159 0.841 18 C -0.184 4.184 19 C -0.014 4.014 20 O -0.244 6.244 21 C 0.050 3.950 22 C 0.023 3.977 23 F -0.123 7.123 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.117 4.117 27 C -0.136 4.136 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.255 0.745 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.154 0.846 40 H 0.108 0.892 41 H 0.183 0.817 42 H 0.181 0.819 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.179 -27.090 1.547 27.454 hybrid contribution -0.179 1.088 -0.035 1.103 sum -4.358 -26.002 1.512 26.408 Atomic orbital electron populations 1.69787 1.06497 1.26272 1.59264 1.25568 0.96466 1.01092 1.03532 0.85217 0.77252 0.79135 0.78198 1.20423 1.21975 1.20426 1.19598 0.91525 0.85466 1.41611 0.90819 1.42528 1.05747 1.01128 1.89553 1.20684 0.94158 0.84840 0.97895 1.21702 0.98430 0.91997 1.03480 1.21113 0.91707 0.84357 1.02017 1.46016 1.11360 1.04804 1.74296 1.20568 0.88940 0.84188 0.75106 1.90710 1.19025 1.85134 1.50574 1.20260 0.99803 0.94125 0.93790 0.84098 1.22186 0.99854 0.94136 1.02269 1.23358 1.01310 0.98035 0.78670 1.86025 1.86405 1.35195 1.16731 1.18744 0.99057 0.88501 0.88664 1.17502 1.08802 0.78416 0.92960 1.91462 1.94329 1.32137 1.94354 1.21342 1.00026 0.92734 0.99237 1.21238 0.99826 0.95161 0.97362 1.21338 0.97487 1.00082 0.92764 1.19354 1.06099 0.91367 0.96782 0.93874 0.79165 0.96166 0.96097 0.90516 0.90522 0.92065 0.91794 0.74529 0.91470 0.86802 0.84565 0.89167 0.81729 0.81917 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.02 13.06 21.65 0.28 -57.73 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.25 -13.84 9.99 84.04 0.84 -13.01 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.75 -36.86 5.60 -343.45 -1.92 -38.78 16 10 C 0.15 5.68 6.26 86.38 0.54 6.22 16 11 C -0.12 -3.14 5.44 30.59 0.17 -2.98 16 12 C 0.13 3.10 5.68 86.38 0.49 3.59 16 13 N -0.71 -12.88 4.84 -463.06 -2.24 -15.12 16 14 C 0.53 11.23 5.79 87.65 0.51 11.74 16 15 O -0.58 -17.78 16.07 -3.03 -0.05 -17.83 16 16 C -0.06 -0.90 2.70 -12.24 -0.03 -0.93 16 17 H 0.14 1.17 8.13 -2.39 -0.02 1.15 16 18 C -0.15 -2.12 5.35 30.75 0.16 -1.95 16 19 C 0.06 0.72 7.03 72.12 0.51 1.23 16 20 O -0.33 -6.80 10.09 -92.31 -0.93 -7.73 16 21 C 0.10 2.05 6.48 22.55 0.15 2.19 16 22 C 0.04 0.91 7.30 22.51 0.16 1.07 16 23 F -0.14 -3.41 17.05 44.97 0.77 -2.64 16 24 C -0.11 -1.82 10.02 22.26 0.22 -1.59 16 25 C -0.12 -1.69 10.04 22.25 0.22 -1.47 16 26 C -0.10 -1.62 9.10 22.31 0.20 -1.42 16 27 C -0.13 -2.47 5.42 -19.75 -0.11 -2.57 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.38 19.37 7.67 -92.71 -0.71 18.66 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.42 5.01 8.42 -92.71 -0.78 4.23 16 37 H 0.07 1.40 7.46 -2.39 -0.02 1.38 16 38 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.14 2.02 6.75 -2.91 -0.02 2.00 16 Total: -1.00 -74.87 363.64 1.99 -72.88 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.44 Total: 23.07 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.50 Total: -3.62 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -3.88 Total: -111.64 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.98 Total: -25.56 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.77 Total: -2.64 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.87 1.99 -72.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162229215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.320 kcal (2) G-P(sol) polarization free energy of solvation -74.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds