Wall clock time and date at job start Tue Mar 31 2020 13:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99779 * 2 1 4 4 H 1.48505 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47332 * 299.99402 * 3 2 1 6 6 H 1.48501 * 109.47297 * 59.99699 * 3 2 1 7 7 C 1.38807 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00227 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47277 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47267 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99971 * 180.02562 * 13 12 11 15 15 O 1.21274 * 119.99897 * 359.72827 * 14 13 12 16 16 C 1.50695 * 119.99635 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.70066 * 300.00156 * 16 14 13 18 18 C 1.53414 * 109.70376 * 60.57017 * 16 14 13 19 19 O 1.42814 * 108.38301 * 184.43490 * 18 16 14 20 20 C 1.35904 * 117.87381 * 310.90188 * 19 18 16 21 21 C 1.39123 * 118.47071 * 196.99747 * 20 19 18 22 22 C 1.37972 * 120.25151 * 180.15154 * 21 20 19 23 23 C 1.38476 * 119.93123 * 0.06463 * 22 21 20 24 24 F 1.35104 * 120.03554 * 179.90508 * 23 22 21 25 25 C 1.38287 * 119.92833 * 359.87985 * 23 22 21 26 26 C 1.38356 * 121.79616 * 17.04532 * 20 19 18 27 27 C 1.50802 * 121.42453 * 359.70449 * 26 20 19 28 28 H 0.96996 * 120.00351 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99473 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46751 * 60.00811 * 10 9 7 31 31 H 1.08992 * 109.47461 * 300.00365 * 10 9 7 32 32 H 1.09004 * 109.46840 * 59.99979 * 11 10 9 33 33 H 1.09005 * 109.47310 * 300.00369 * 11 10 9 34 34 H 1.09004 * 109.47330 * 60.00123 * 12 11 10 35 35 H 1.09005 * 109.47124 * 300.00327 * 12 11 10 36 36 H 0.96999 * 119.99984 * 359.97438 * 13 12 11 37 37 H 1.08999 * 109.67789 * 304.15609 * 18 16 14 38 38 H 1.08993 * 109.68061 * 64.67060 * 18 16 14 39 39 H 1.08004 * 119.87809 * 0.19326 * 21 20 19 40 40 H 1.08008 * 120.03293 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.84908 * 180.02562 * 25 23 22 42 42 H 1.09001 * 109.40090 * 257.67853 * 27 26 20 43 43 H 1.08994 * 109.47564 * 137.80077 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 6 1.8288 -6.1447 0.0029 13 7 0.8768 -7.2582 0.0029 14 6 1.3261 -8.5290 0.0039 15 8 2.5184 -8.7505 -0.0001 16 6 0.3468 -9.6743 0.0045 17 1 -0.2822 -9.6195 0.8930 18 6 -0.5284 -9.6072 -1.2537 19 8 -1.5114 -10.6402 -1.1742 20 6 -1.0905 -11.8956 -0.8681 21 6 -1.9422 -12.9635 -1.1322 22 6 -1.5534 -14.2531 -0.8332 23 6 -0.3115 -14.4866 -0.2669 24 9 0.0706 -15.7484 0.0284 25 6 0.5374 -13.4270 -0.0045 26 6 0.1514 -12.1313 -0.3055 27 6 1.1068 -11.0030 -0.0085 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0016 30 1 2.6853 -3.7141 0.8912 31 1 2.6841 -3.7149 -0.8887 32 1 0.4368 -4.7622 -0.8876 33 1 0.4374 -4.7618 0.8925 34 1 2.4555 -6.2020 0.8929 35 1 2.4555 -6.2029 -0.8871 36 1 -0.0769 -7.0810 0.0029 37 1 -1.0201 -8.6359 -1.3074 38 1 0.0897 -9.7552 -2.1391 39 1 -2.9112 -12.7824 -1.5735 40 1 -2.2176 -15.0795 -1.0394 41 1 1.5059 -13.6106 0.4368 42 1 1.8797 -10.9713 -0.7765 43 1 1.5699 -11.1657 0.9647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162521638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:41 Heat of formation + Delta-G solvation = -95.637941 kcal Electronic energy + Delta-G solvation = -25539.531647 eV Core-core repulsion = 21499.122487 eV Total energy + Delta-G solvation = -4040.409160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.20359 -41.42436 -39.75473 -37.75297 -36.22711 -34.67344 -34.47605 -32.21491 -31.29456 -30.38218 -29.52213 -26.34682 -25.73955 -24.46632 -23.28070 -22.66262 -21.44821 -21.15655 -19.98832 -18.43854 -18.07432 -17.50778 -17.18613 -16.84507 -16.08558 -16.03026 -15.88866 -15.47929 -15.10532 -14.92231 -14.70713 -14.48047 -13.99384 -13.88767 -13.71547 -13.58354 -13.36254 -13.32009 -13.09716 -12.89530 -12.49446 -11.80875 -11.73492 -11.56937 -11.31556 -11.13951 -11.02482 -10.97882 -10.82321 -10.69318 -10.14798 -10.00071 -9.74876 -9.43762 -9.23085 -8.92620 -8.53256 -6.97914 -5.81331 -3.10490 0.65468 0.73593 2.29201 2.66570 2.89194 3.09851 3.40946 3.46854 3.48999 3.79618 3.99119 4.07772 4.15511 4.29630 4.44412 4.55244 4.61496 4.67204 4.84285 4.92898 4.99503 5.03199 5.15434 5.21528 5.35457 5.40905 5.53223 5.53369 5.56826 5.64970 5.69427 5.81207 5.87923 5.97237 6.11523 6.22596 6.25492 6.28420 6.72184 6.76413 6.86366 7.24793 7.66951 7.93715 8.37566 9.48893 10.05411 10.39895 11.41673 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.042275 B = 0.001692 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.165167 B =16549.110990 C =17099.189480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.121 3.879 13 N -0.724 5.724 14 C 0.520 3.480 15 O -0.533 6.533 16 C -0.148 4.148 17 H 0.115 0.885 18 C 0.072 3.928 19 O -0.305 6.305 20 C 0.119 3.881 21 C -0.117 4.117 22 C -0.122 4.122 23 C 0.067 3.933 24 F -0.141 7.141 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.061 4.061 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.402 0.598 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.096 0.904 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -29.996 -1.605 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.376 5.376 14 C 0.305 3.695 15 O -0.410 6.410 16 C -0.170 4.170 17 H 0.133 0.867 18 C -0.004 4.004 19 O -0.219 6.219 20 C 0.074 3.926 21 C -0.136 4.136 22 C -0.141 4.141 23 C 0.048 3.952 24 F -0.119 7.119 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.098 4.098 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.236 0.764 37 H 0.135 0.865 38 H 0.094 0.906 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.114 0.886 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.728 -29.987 -1.636 30.262 hybrid contribution -0.082 0.888 0.188 0.911 sum -3.810 -29.099 -1.448 29.383 Atomic orbital electron populations 1.69665 1.05142 1.25622 1.57830 1.24756 0.95566 0.97790 1.02926 0.86094 0.78811 0.83943 0.77208 1.20499 1.21813 1.21821 1.19293 0.91152 0.84100 1.42658 0.91018 1.42338 1.05862 0.99979 1.89627 1.20517 0.93249 0.85191 0.98242 1.21955 0.99611 0.93266 1.02805 1.21415 0.91683 0.84471 1.02662 1.46126 1.10942 1.05737 1.74777 1.20089 0.89204 0.83650 0.76563 1.90732 1.16532 1.84600 1.49101 1.22038 0.98215 0.95040 1.01712 0.86718 1.22988 0.90334 0.90684 0.96376 1.86064 1.35703 1.14781 1.85325 1.18726 0.92944 0.84869 0.96052 1.20450 1.00865 0.89518 1.02726 1.20939 0.95390 0.97591 1.00161 1.17501 0.94929 0.79316 1.03490 1.91502 1.91459 1.37480 1.91503 1.20877 1.00387 0.90720 1.01580 1.19688 0.95419 0.95160 1.02479 1.20349 0.96070 0.88621 1.04793 0.93526 0.78297 0.96043 0.96045 0.91209 0.91226 0.91169 0.91138 0.76386 0.86506 0.90632 0.83968 0.84030 0.84260 0.88576 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.25 5.60 -59.91 -0.34 -18.58 16 10 C 0.16 2.99 6.26 -4.04 -0.03 2.97 16 11 C -0.14 -1.95 5.44 -26.73 -0.15 -2.09 16 12 C 0.12 1.47 5.67 -4.05 -0.02 1.45 16 13 N -0.72 -6.97 5.44 -60.30 -0.33 -7.29 16 14 C 0.52 5.41 7.16 -10.98 -0.08 5.33 16 15 O -0.53 -7.62 15.79 5.56 0.09 -7.53 16 16 C -0.15 -1.13 2.76 -91.52 -0.25 -1.38 16 17 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 18 C 0.07 0.49 6.26 37.37 0.23 0.72 16 19 O -0.31 -2.52 10.27 -19.44 -0.20 -2.72 16 20 C 0.12 1.00 6.47 -39.21 -0.25 0.74 16 21 C -0.12 -0.84 9.93 -39.35 -0.39 -1.23 16 22 C -0.12 -0.85 10.02 -39.59 -0.40 -1.24 16 23 C 0.07 0.55 7.30 -39.48 -0.29 0.27 16 24 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 25 C -0.12 -0.93 9.64 -39.46 -0.38 -1.31 16 26 C -0.13 -1.03 5.75 -104.43 -0.60 -1.63 16 27 C -0.06 -0.49 4.66 -27.80 -0.13 -0.62 16 28 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.38 9.91 7.67 -40.82 -0.31 9.60 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 2.85 7.91 -40.82 -0.32 2.52 16 37 H 0.12 0.58 7.53 -51.93 -0.39 0.18 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 41 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.10 0.85 7.70 -51.93 -0.40 0.45 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -33.27 365.51 -8.55 -41.82 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.05 Total: 5.45 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.98 Total: -5.41 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.06 Total: -53.10 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.11 Total: -10.25 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.27 -8.55 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162521638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.814 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds