Wall clock time and date at job start Tue Mar 31 2020 13:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99779 * 2 1 4 4 H 1.48505 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47332 * 299.99402 * 3 2 1 6 6 H 1.48501 * 109.47297 * 59.99699 * 3 2 1 7 7 C 1.38807 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00227 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47277 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47267 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99971 * 180.02562 * 13 12 11 15 15 O 1.21274 * 119.99897 * 359.72827 * 14 13 12 16 16 C 1.50695 * 119.99635 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.70066 * 300.00156 * 16 14 13 18 18 C 1.53414 * 109.70376 * 60.57017 * 16 14 13 19 19 O 1.42814 * 108.38301 * 184.43490 * 18 16 14 20 20 C 1.35904 * 117.87381 * 310.90188 * 19 18 16 21 21 C 1.39123 * 118.47071 * 196.99747 * 20 19 18 22 22 C 1.37972 * 120.25151 * 180.15154 * 21 20 19 23 23 C 1.38476 * 119.93123 * 0.06463 * 22 21 20 24 24 F 1.35104 * 120.03554 * 179.90508 * 23 22 21 25 25 C 1.38287 * 119.92833 * 359.87985 * 23 22 21 26 26 C 1.38356 * 121.79616 * 17.04532 * 20 19 18 27 27 C 1.50802 * 121.42453 * 359.70449 * 26 20 19 28 28 H 0.96996 * 120.00351 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99473 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46751 * 60.00811 * 10 9 7 31 31 H 1.08992 * 109.47461 * 300.00365 * 10 9 7 32 32 H 1.09004 * 109.46840 * 59.99979 * 11 10 9 33 33 H 1.09005 * 109.47310 * 300.00369 * 11 10 9 34 34 H 1.09004 * 109.47330 * 60.00123 * 12 11 10 35 35 H 1.09005 * 109.47124 * 300.00327 * 12 11 10 36 36 H 0.96999 * 119.99984 * 359.97438 * 13 12 11 37 37 H 1.08999 * 109.67789 * 304.15609 * 18 16 14 38 38 H 1.08993 * 109.68061 * 64.67060 * 18 16 14 39 39 H 1.08004 * 119.87809 * 0.19326 * 21 20 19 40 40 H 1.08008 * 120.03293 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.84908 * 180.02562 * 25 23 22 42 42 H 1.09001 * 109.40090 * 257.67853 * 27 26 20 43 43 H 1.08994 * 109.47564 * 137.80077 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 6 1.8288 -6.1447 0.0029 13 7 0.8768 -7.2582 0.0029 14 6 1.3261 -8.5290 0.0039 15 8 2.5184 -8.7505 -0.0001 16 6 0.3468 -9.6743 0.0045 17 1 -0.2822 -9.6195 0.8930 18 6 -0.5284 -9.6072 -1.2537 19 8 -1.5114 -10.6402 -1.1742 20 6 -1.0905 -11.8956 -0.8681 21 6 -1.9422 -12.9635 -1.1322 22 6 -1.5534 -14.2531 -0.8332 23 6 -0.3115 -14.4866 -0.2669 24 9 0.0706 -15.7484 0.0284 25 6 0.5374 -13.4270 -0.0045 26 6 0.1514 -12.1313 -0.3055 27 6 1.1068 -11.0030 -0.0085 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0016 30 1 2.6853 -3.7141 0.8912 31 1 2.6841 -3.7149 -0.8887 32 1 0.4368 -4.7622 -0.8876 33 1 0.4374 -4.7618 0.8925 34 1 2.4555 -6.2020 0.8929 35 1 2.4555 -6.2029 -0.8871 36 1 -0.0769 -7.0810 0.0029 37 1 -1.0201 -8.6359 -1.3074 38 1 0.0897 -9.7552 -2.1391 39 1 -2.9112 -12.7824 -1.5735 40 1 -2.2176 -15.0795 -1.0394 41 1 1.5059 -13.6106 0.4368 42 1 1.8797 -10.9713 -0.7765 43 1 1.5699 -11.1657 0.9647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162521638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:41 Heat of formation + Delta-G solvation = -117.381247 kcal Electronic energy + Delta-G solvation = -25540.474507 eV Core-core repulsion = 21499.122487 eV Total energy + Delta-G solvation = -4041.352021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.85549 -42.06459 -40.58153 -38.33901 -37.55655 -35.96741 -35.34296 -33.79028 -32.18706 -31.02647 -30.92801 -27.32796 -26.70671 -25.57291 -24.18858 -23.84588 -22.58473 -22.11329 -20.78036 -19.22697 -19.01425 -18.65852 -18.12815 -17.69297 -17.10946 -16.87027 -16.63456 -16.46225 -16.18555 -15.92254 -15.55707 -15.37038 -15.28938 -15.00586 -14.78831 -14.49696 -14.27610 -14.20830 -13.95716 -13.73677 -13.60135 -13.31048 -12.84852 -12.60685 -12.41981 -12.36913 -12.17586 -12.04614 -12.03778 -11.88050 -11.80238 -11.71863 -10.96461 -10.95653 -10.16403 -9.99867 -9.13732 -9.01561 -7.97108 -5.25939 0.08815 0.13928 1.46761 1.48267 1.48445 1.58794 1.97260 2.18617 2.51117 2.56089 3.19058 3.35431 3.37185 3.48216 3.56571 3.72740 3.76598 3.83748 4.07069 4.07866 4.10408 4.29069 4.29474 4.39658 4.44744 4.47053 4.58496 4.74046 4.74662 4.80460 4.82971 4.89345 4.95999 5.08399 5.13312 5.23015 5.28230 5.32785 5.38666 5.49385 5.65664 6.26082 6.28158 6.46232 7.13299 7.32688 8.07784 8.31089 9.26484 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.042275 B = 0.001692 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.165167 B =16549.110990 C =17099.189480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.119 4.119 12 C 0.132 3.868 13 N -0.713 5.713 14 C 0.524 3.476 15 O -0.574 6.574 16 C -0.137 4.137 17 H 0.131 0.869 18 C 0.071 3.929 19 O -0.309 6.309 20 C 0.108 3.892 21 C -0.118 4.118 22 C -0.117 4.117 23 C 0.050 3.950 24 F -0.149 7.149 25 C -0.123 4.123 26 C -0.133 4.133 27 C -0.059 4.059 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.417 0.583 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.146 0.854 42 H 0.084 0.916 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 -30.596 -1.790 31.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.157 4.157 12 C 0.008 3.992 13 N -0.366 5.366 14 C 0.310 3.690 15 O -0.454 6.454 16 C -0.158 4.158 17 H 0.149 0.851 18 C -0.004 4.004 19 O -0.223 6.223 20 C 0.063 3.937 21 C -0.137 4.137 22 C -0.136 4.136 23 C 0.031 3.969 24 F -0.128 7.128 25 C -0.142 4.142 26 C -0.134 4.134 27 C -0.097 4.097 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.254 0.746 37 H 0.157 0.843 38 H 0.092 0.908 39 H 0.179 0.821 40 H 0.181 0.819 41 H 0.164 0.836 42 H 0.103 0.897 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.345 -30.617 -1.821 30.977 hybrid contribution 0.137 1.000 0.240 1.037 sum -4.208 -29.617 -1.581 29.956 Atomic orbital electron populations 1.69803 1.06518 1.26107 1.59404 1.25564 0.96462 1.01096 1.03562 0.85075 0.78197 0.79744 0.76743 1.19184 1.21894 1.21941 1.19686 0.91576 0.85463 1.41358 0.90728 1.42543 1.05750 1.01155 1.89521 1.20695 0.94167 0.84821 0.97955 1.21709 0.98462 0.92135 1.03415 1.21114 0.91677 0.84290 1.02111 1.45950 1.11432 1.04958 1.74210 1.20483 0.89002 0.84138 0.75347 1.90722 1.18470 1.85165 1.50997 1.21965 0.97569 0.93330 1.02984 0.85145 1.23119 0.90303 0.91364 0.95655 1.86065 1.36044 1.14863 1.85331 1.18952 0.93195 0.85319 0.96277 1.20708 1.01441 0.89195 1.02325 1.21197 0.95046 0.98301 0.99006 1.17724 0.95736 0.79049 1.04375 1.91480 1.91625 1.37961 1.91695 1.21007 1.00810 0.90758 1.01597 1.19681 0.95578 0.95104 1.03027 1.20293 0.95919 0.89059 1.04381 0.93909 0.79194 0.96116 0.95995 0.90467 0.90731 0.91935 0.91674 0.74578 0.84300 0.90792 0.82119 0.81869 0.83606 0.89741 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.75 -36.92 5.60 -343.46 -1.92 -38.84 16 10 C 0.15 5.65 6.26 86.38 0.54 6.19 16 11 C -0.12 -3.17 5.44 30.59 0.17 -3.01 16 12 C 0.13 3.04 5.67 86.38 0.49 3.53 16 13 N -0.71 -12.33 5.44 -463.07 -2.52 -14.85 16 14 C 0.52 10.22 7.16 87.65 0.63 10.84 16 15 O -0.57 -16.19 15.79 -3.01 -0.05 -16.23 16 16 C -0.14 -1.87 2.76 -11.38 -0.03 -1.90 16 17 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 18 C 0.07 0.82 6.26 72.12 0.45 1.27 16 19 O -0.31 -4.48 10.27 -92.47 -0.95 -5.43 16 20 C 0.11 1.64 6.47 22.51 0.15 1.78 16 21 C -0.12 -1.47 9.93 22.42 0.22 -1.25 16 22 C -0.12 -1.43 10.02 22.26 0.22 -1.21 16 23 C 0.05 0.79 7.30 22.34 0.16 0.96 16 24 F -0.15 -2.65 17.27 44.97 0.78 -1.87 16 25 C -0.12 -1.90 9.64 22.35 0.22 -1.68 16 26 C -0.13 -2.06 5.75 -19.74 -0.11 -2.18 16 27 C -0.06 -0.92 4.66 29.91 0.14 -0.78 16 28 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.38 19.42 7.67 -92.71 -0.71 18.71 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.97 8.14 -2.38 -0.02 1.96 16 33 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.42 4.76 7.91 -92.71 -0.73 4.03 16 37 H 0.14 0.96 7.53 -2.39 -0.02 0.94 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.08 1.51 7.70 -2.39 -0.02 1.49 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -70.76 365.51 1.80 -68.96 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.40 Total: 22.67 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 4.55 Total: -4.15 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -4.16 Total: -111.58 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -1.00 Total: -21.67 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -70.76 1.80 -68.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162521638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.419 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds