Wall clock time and date at job start Tue Mar 31 2020 13:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46992 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47327 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00321 * 180.02562 * 13 12 11 15 15 O 1.21276 * 119.99752 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99977 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.67942 * 304.48327 * 16 14 13 18 18 C 1.53411 * 109.68189 * 65.00174 * 16 14 13 19 19 C 1.53064 * 108.29665 * 184.43840 * 18 16 14 20 20 C 1.50774 * 109.68516 * 311.77624 * 19 18 16 21 21 C 1.38521 * 118.74238 * 197.83259 * 20 19 18 22 22 C 1.38061 * 120.35451 * 180.15945 * 21 20 19 23 23 C 1.38525 * 119.95648 * 0.03065 * 22 21 20 24 24 F 1.35100 * 120.04483 * 179.97438 * 23 22 21 25 25 C 1.38182 * 119.90013 * 359.91497 * 23 22 21 26 26 C 1.38398 * 121.39042 * 17.86116 * 20 19 18 27 27 O 1.35842 * 121.80405 * 359.46977 * 26 20 19 28 28 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 31 31 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 32 32 H 1.08998 * 109.47524 * 300.00356 * 11 10 9 33 33 H 1.09005 * 109.46939 * 60.00729 * 11 10 9 34 34 H 1.08998 * 109.47307 * 300.00526 * 12 11 10 35 35 H 1.08997 * 109.46799 * 60.00313 * 12 11 10 36 36 H 0.97005 * 119.99513 * 0.02562 * 13 12 11 37 37 H 1.09007 * 109.69837 * 304.13741 * 18 16 14 38 38 H 1.08993 * 109.69517 * 64.73413 * 18 16 14 39 39 H 1.09002 * 109.43961 * 71.84514 * 19 18 16 40 40 H 1.09006 * 109.43668 * 191.71478 * 19 18 16 41 41 H 1.08000 * 119.82692 * 0.18676 * 21 20 19 42 42 H 1.08007 * 120.02321 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.89745 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 6 1.8291 -6.1447 -0.0026 13 7 0.8772 -7.2583 -0.0024 14 6 1.3265 -8.5289 -0.0033 15 8 2.5188 -8.7505 -0.0038 16 6 0.3472 -9.6744 -0.0025 17 1 -0.3320 -9.5761 0.8444 18 6 -0.4541 -9.6701 -1.3107 19 6 -1.5117 -10.7736 -1.2300 20 6 -0.8731 -12.0558 -0.7594 21 6 -1.5434 -13.2498 -0.9686 22 6 -0.9908 -14.4431 -0.5482 23 6 0.2402 -14.4495 0.0871 24 9 0.7823 -15.6162 0.4997 25 6 0.9132 -13.2611 0.2970 26 6 0.3585 -12.0583 -0.1280 27 8 1.0545 -10.9119 0.0882 28 1 -0.4850 -0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6843 -3.7140 -0.8921 31 1 2.6855 -3.7148 0.8878 32 1 0.4383 -4.7622 0.8899 33 1 0.4364 -4.7618 -0.8901 34 1 2.4545 -6.2019 -0.8935 35 1 2.4570 -6.2028 0.8864 36 1 -0.0765 -7.0810 -0.0016 37 1 -0.9409 -8.7034 -1.4402 38 1 0.2133 -9.8615 -2.1508 39 1 -2.2917 -10.4780 -0.5283 40 1 -1.9510 -10.9278 -2.2156 41 1 -2.5033 -13.2473 -1.4636 42 1 -1.5179 -15.3710 -0.7144 43 1 1.8727 -13.2661 0.7927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162529101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:30 Heat of formation + Delta-G solvation = -91.551817 kcal Electronic energy + Delta-G solvation = -25606.438506 eV Core-core repulsion = 21566.206533 eV Total energy + Delta-G solvation = -4040.231972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.32167 -41.45154 -39.69347 -37.68686 -36.21348 -35.01433 -34.53619 -32.32580 -31.15960 -30.79536 -29.36500 -26.97152 -24.81566 -24.37191 -23.28005 -22.80448 -21.48741 -21.24529 -20.32274 -18.82464 -18.05282 -17.32579 -17.21737 -16.44694 -16.37035 -16.02853 -15.91262 -15.70930 -15.24175 -14.95765 -14.79588 -14.43328 -14.28545 -14.08220 -13.76989 -13.60507 -13.52624 -13.43245 -13.16225 -12.57365 -12.36788 -11.93281 -11.68539 -11.65032 -11.59853 -11.22820 -11.12390 -10.97730 -10.66090 -10.60378 -10.03613 -9.97232 -9.29071 -9.25065 -9.21631 -8.92562 -8.70432 -7.06068 -6.14918 -3.14974 0.60532 0.77356 2.12299 2.27252 3.00493 3.20515 3.50354 3.53793 3.71137 3.89895 3.95002 4.08581 4.11955 4.25896 4.40947 4.51106 4.62262 4.63049 4.68295 4.89679 4.94687 4.96342 5.13881 5.17562 5.24480 5.42574 5.44513 5.51338 5.57207 5.57480 5.69124 5.78866 5.85464 5.89619 5.94451 6.10673 6.18141 6.23854 6.64060 6.67777 6.82947 7.19790 7.77219 7.90412 8.71574 9.17936 10.04298 10.18469 11.33706 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.042253 B = 0.001706 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.512984 B =16408.960063 C =16938.259686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.046 4.046 3 Si 1.081 2.919 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.066 0.934 9 N -0.745 5.745 10 C 0.161 3.839 11 C -0.138 4.138 12 C 0.124 3.876 13 N -0.721 5.721 14 C 0.519 3.481 15 O -0.515 6.515 16 C 0.075 3.925 17 H 0.102 0.898 18 C -0.151 4.151 19 C -0.075 4.075 20 C -0.173 4.173 21 C -0.054 4.054 22 C -0.186 4.186 23 C 0.132 3.868 24 F -0.134 7.134 25 C -0.183 4.183 26 C 0.166 3.834 27 O -0.284 6.284 28 H 0.254 0.746 29 H 0.367 0.633 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.402 0.598 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.811 -29.785 -1.961 30.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.243 4.243 3 Si 0.912 3.088 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.084 0.916 9 N -0.390 5.390 10 C 0.033 3.967 11 C -0.177 4.177 12 C 0.001 3.999 13 N -0.374 5.374 14 C 0.302 3.698 15 O -0.389 6.389 16 C 0.015 3.985 17 H 0.120 0.880 18 C -0.189 4.189 19 C -0.112 4.112 20 C -0.174 4.174 21 C -0.072 4.072 22 C -0.205 4.205 23 C 0.113 3.887 24 F -0.113 7.113 25 C -0.203 4.203 26 C 0.119 3.881 27 O -0.196 6.196 28 H 0.065 0.935 29 H 0.200 0.800 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.236 0.764 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.595 -28.280 -1.896 28.891 hybrid contribution -0.601 -1.840 0.061 1.936 sum -6.195 -30.120 -1.835 30.805 Atomic orbital electron populations 1.70901 1.06031 1.28303 1.53705 1.25820 0.97063 1.01075 1.00336 0.83225 0.74212 0.75459 0.75934 1.20989 1.22202 1.22200 1.20051 0.92136 0.85770 1.48476 0.91647 1.42335 1.04852 1.00954 1.90909 1.20459 0.93139 0.84634 0.98457 1.21967 0.99642 0.93393 1.02658 1.21403 0.91561 0.84032 1.02899 1.45903 1.10974 1.05091 1.75463 1.19829 0.89104 0.83464 0.77358 1.90770 1.16267 1.84349 1.47528 1.22309 0.93053 0.82927 1.00180 0.88001 1.22255 0.98615 1.01099 0.96949 1.20497 0.97331 0.90518 1.02836 1.19910 0.96091 0.96870 1.04578 1.20736 0.99198 0.90270 0.96978 1.21031 0.95688 0.99912 1.03824 1.17233 0.92778 0.80867 0.97826 1.91525 1.85748 1.45854 1.88152 1.20442 1.03498 0.89313 1.07026 1.18311 0.90414 0.85763 0.93567 1.86081 1.36426 1.11426 1.85659 0.93502 0.80040 0.95879 0.95874 0.91268 0.91287 0.90997 0.90985 0.76397 0.88576 0.89384 0.89648 0.89046 0.84508 0.84440 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.95 13.70 55.49 0.76 -28.19 16 2 C -0.05 -1.32 5.50 -17.43 -0.10 -1.42 16 3 Si 1.08 25.80 29.92 -169.99 -5.09 20.72 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.33 -9.46 9.99 -15.06 -0.15 -9.61 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.74 -18.57 5.60 -59.91 -0.34 -18.91 16 10 C 0.16 3.14 6.26 -4.04 -0.03 3.12 16 11 C -0.14 -1.95 5.44 -26.73 -0.15 -2.10 16 12 C 0.12 1.56 5.67 -4.04 -0.02 1.54 16 13 N -0.72 -7.23 5.49 -60.30 -0.33 -7.56 16 14 C 0.52 6.15 7.19 -10.99 -0.08 6.08 16 15 O -0.51 -8.58 16.52 -14.21 -0.23 -8.82 16 16 C 0.08 0.67 3.21 -27.67 -0.09 0.58 16 17 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 18 C -0.15 -0.95 5.46 -26.49 -0.14 -1.09 16 19 C -0.07 -0.38 5.86 -27.81 -0.16 -0.54 16 20 C -0.17 -1.27 5.75 -104.42 -0.60 -1.87 16 21 C -0.05 -0.32 9.66 -39.54 -0.38 -0.71 16 22 C -0.19 -1.28 10.03 -39.54 -0.40 -1.67 16 23 C 0.13 1.17 7.30 -39.50 -0.29 0.88 16 24 F -0.13 -1.27 17.27 2.25 0.04 -1.24 16 25 C -0.18 -1.77 9.91 -39.28 -0.39 -2.16 16 26 C 0.17 1.62 6.47 -39.20 -0.25 1.36 16 27 O -0.28 -3.27 9.46 -39.02 -0.37 -3.64 16 28 H 0.25 7.60 6.77 -40.82 -0.28 7.33 16 29 H 0.37 9.17 6.50 -40.82 -0.27 8.91 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.40 2.78 8.23 -40.82 -0.34 2.44 16 37 H 0.10 0.41 7.85 -51.92 -0.41 0.00 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -35.80 365.75 -9.26 -45.06 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.99 Total: 4.69 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.23 Total: -7.62 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.09 Total: -54.67 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.60 Total: -12.46 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.09 Total: 20.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.80 -9.26 -45.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162529101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.493 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds