Wall clock time and date at job start Tue Mar 31 2020 13:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99650 * 2 1 4 4 H 1.48490 * 109.47180 * 269.99933 * 3 2 1 5 5 H 1.48494 * 109.47131 * 30.00521 * 3 2 1 6 6 H 1.48500 * 109.46710 * 150.00138 * 3 2 1 7 7 C 1.38811 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00036 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99879 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47207 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46937 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.46838 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99729 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00401 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99451 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.68084 * 54.48296 * 16 14 13 18 18 C 1.53402 * 109.68220 * 293.92864 * 16 14 13 19 19 C 1.53067 * 108.29861 * 175.58547 * 18 16 14 20 20 C 1.50774 * 109.74331 * 48.04033 * 19 18 16 21 21 C 1.38528 * 118.73571 * 161.95259 * 20 19 18 22 22 C 1.38065 * 120.34797 * 179.82233 * 21 20 19 23 23 C 1.38521 * 119.95666 * 0.29307 * 22 21 20 24 24 F 1.35105 * 120.04813 * 180.11681 * 23 22 21 25 25 C 1.38187 * 119.90366 * 0.10154 * 23 22 21 26 26 C 1.38395 * 121.39160 * 342.51952 * 20 19 18 27 27 O 1.35843 * 121.80444 * 0.10221 * 26 20 19 28 28 H 0.96992 * 120.00161 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00306 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47105 * 59.99183 * 10 9 7 31 31 H 1.09004 * 109.46966 * 299.99798 * 10 9 7 32 32 H 1.09005 * 109.46613 * 59.99981 * 11 10 9 33 33 H 1.08996 * 109.46746 * 300.00078 * 11 10 9 34 34 H 1.08997 * 109.47496 * 60.00080 * 12 11 10 35 35 H 1.09000 * 109.46972 * 299.99641 * 12 11 10 36 36 H 0.96999 * 120.00285 * 0.02562 * 13 12 11 37 37 H 1.09008 * 109.69853 * 295.29258 * 18 16 14 38 38 H 1.09005 * 109.69764 * 55.88447 * 18 16 14 39 39 H 1.09011 * 109.43314 * 168.32191 * 19 18 16 40 40 H 1.08998 * 109.43684 * 288.23400 * 19 18 16 41 41 H 1.08002 * 119.82929 * 0.10418 * 21 20 19 42 42 H 1.08000 * 120.02338 * 180.27491 * 22 21 20 43 43 H 1.07999 * 119.90101 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6568 -0.0016 11 6 1.0640 -4.8198 -0.0022 12 6 1.8291 -6.1447 -0.0029 13 7 0.8771 -7.2583 -0.0041 14 6 1.3264 -8.5289 -0.0043 15 8 2.5188 -8.7505 -0.0040 16 6 0.3471 -9.6744 -0.0062 17 1 -0.3436 -9.5654 -0.8423 18 6 -0.4355 -9.6871 1.3131 19 6 -1.4940 -10.7900 1.2334 20 6 -0.8641 -12.0653 0.7331 21 6 -1.5295 -13.2625 0.9400 22 6 -0.9849 -14.4497 0.4925 23 6 0.2361 -14.4474 -0.1616 24 9 0.7697 -15.6077 -0.6023 25 6 0.9076 -13.2565 -0.3630 26 6 0.3604 -12.0598 0.0882 27 8 1.0530 -10.9105 -0.1233 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3881 -0.0016 30 1 2.6843 -3.7148 0.8887 31 1 2.6855 -3.7141 -0.8912 32 1 0.4377 -4.7618 -0.8925 33 1 0.4370 -4.7622 0.8875 34 1 2.4557 -6.2029 0.8871 35 1 2.4557 -6.2020 -0.8929 36 1 -0.0766 -7.0811 -0.0048 37 1 0.2438 -9.8890 2.1414 38 1 -0.9206 -8.7224 1.4619 39 1 -1.9196 -10.9564 2.2230 40 1 -2.2831 -10.4863 0.5455 41 1 -2.4816 -13.2668 1.4499 42 1 -1.5104 -15.3795 0.6527 43 1 1.8597 -13.2548 -0.8726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162529102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:32 Heat of formation + Delta-G solvation = -114.501190 kcal Electronic energy + Delta-G solvation = -25567.748231 eV Core-core repulsion = 21526.521100 eV Total energy + Delta-G solvation = -4041.227132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.98547 -42.09659 -40.54205 -38.33697 -37.47461 -36.02420 -35.34334 -33.77729 -32.05488 -31.44556 -30.86921 -27.87268 -26.49613 -24.91790 -24.36011 -23.82586 -22.60274 -22.07521 -21.02494 -19.46534 -19.26733 -18.61733 -17.92672 -17.25915 -17.06577 -16.84773 -16.75363 -16.56996 -16.41822 -15.89650 -15.58318 -15.53941 -15.28396 -15.10557 -14.78758 -14.58047 -14.30753 -14.14177 -13.93471 -13.75094 -13.31223 -12.95308 -12.82149 -12.60384 -12.44859 -12.39075 -12.24199 -12.07981 -12.05296 -12.03945 -11.79637 -11.67202 -10.94190 -10.89656 -10.22090 -9.82246 -9.27365 -9.01044 -7.96546 -5.25261 0.04304 0.20989 1.36673 1.44177 1.48710 1.49676 1.58276 2.38561 2.52913 2.57846 3.33071 3.37489 3.44181 3.46556 3.63399 3.74491 3.76779 3.86385 3.99764 4.08721 4.11365 4.20060 4.28756 4.42998 4.45054 4.51108 4.72643 4.73348 4.79667 4.87894 4.92956 4.98674 5.04411 5.10995 5.16992 5.24047 5.32534 5.35080 5.35769 5.49520 5.66980 6.21020 6.26656 6.44826 7.08528 7.33331 8.08068 8.32037 9.26739 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.042048 B = 0.001701 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.740393 B =16457.517307 C =16981.181369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.746 5.746 10 C 0.150 3.850 11 C -0.117 4.117 12 C 0.133 3.867 13 N -0.703 5.703 14 C 0.517 3.483 15 O -0.573 6.573 16 C 0.075 3.925 17 H 0.129 0.871 18 C -0.147 4.147 19 C -0.071 4.071 20 C -0.170 4.170 21 C -0.046 4.046 22 C -0.181 4.181 23 C 0.113 3.887 24 F -0.145 7.145 25 C -0.205 4.205 26 C 0.142 3.858 27 O -0.318 6.318 28 H 0.252 0.748 29 H 0.377 0.623 30 H 0.021 0.979 31 H 0.020 0.980 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.421 0.579 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.175 0.825 42 H 0.160 0.840 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 -30.119 2.810 31.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.389 5.389 10 C 0.023 3.977 11 C -0.155 4.155 12 C 0.009 3.991 13 N -0.357 5.357 14 C 0.303 3.697 15 O -0.451 6.451 16 C 0.016 3.984 17 H 0.147 0.853 18 C -0.185 4.185 19 C -0.108 4.108 20 C -0.172 4.172 21 C -0.064 4.064 22 C -0.199 4.199 23 C 0.094 3.906 24 F -0.123 7.123 25 C -0.225 4.225 26 C 0.097 3.903 27 O -0.232 6.232 28 H 0.061 0.939 29 H 0.209 0.791 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.259 0.741 37 H 0.088 0.912 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.192 0.808 42 H 0.178 0.822 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.220 -30.179 2.750 31.399 hybrid contribution 0.316 0.909 -0.338 1.020 sum -7.904 -29.270 2.412 30.414 Atomic orbital electron populations 1.69795 1.06455 1.26174 1.59297 1.25554 0.96472 1.01036 1.03520 0.85146 0.77705 0.79489 0.77456 1.21393 1.21954 1.19633 1.19642 0.91551 0.85496 1.41543 0.90838 1.42514 1.05751 1.01066 1.89541 1.20692 0.94188 0.84874 0.97941 1.21693 0.98430 0.91691 1.03682 1.21137 0.91649 0.84179 1.02107 1.45677 1.11679 1.04047 1.74331 1.20444 0.88890 0.84446 0.75921 1.90743 1.18846 1.85206 1.50318 1.22463 0.92294 0.80929 1.02709 0.85333 1.22292 0.98584 1.03214 0.94369 1.20630 0.97094 0.88615 1.04442 1.20284 0.95096 0.98759 1.03011 1.21173 1.00117 0.89127 0.95994 1.21370 0.94819 1.01549 1.02189 1.17456 0.94012 0.80395 0.98754 1.91493 1.86402 1.46787 1.87636 1.20504 1.03672 0.90425 1.07903 1.18506 0.91724 0.84985 0.95113 1.86018 1.38537 1.12502 1.86100 0.93890 0.79111 0.96059 0.96173 0.90421 0.90170 0.91779 0.92016 0.74137 0.91162 0.85891 0.86702 0.87184 0.80758 0.82224 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.82 13.06 21.65 0.28 -57.54 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.75 -36.80 5.60 -343.44 -1.92 -38.72 16 10 C 0.15 5.67 6.26 86.38 0.54 6.21 16 11 C -0.12 -3.12 5.44 30.59 0.17 -2.95 16 12 C 0.13 3.21 5.67 86.38 0.49 3.70 16 13 N -0.70 -13.00 5.52 -463.06 -2.56 -15.56 16 14 C 0.52 12.05 7.18 87.66 0.63 12.68 16 15 O -0.57 -19.77 16.52 15.87 0.26 -19.51 16 16 C 0.08 1.24 3.21 29.98 0.10 1.33 16 17 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 18 C -0.15 -1.46 5.46 30.75 0.17 -1.29 16 19 C -0.07 -0.43 5.86 29.89 0.18 -0.25 16 20 C -0.17 -2.10 5.75 -19.73 -0.11 -2.21 16 21 C -0.05 -0.41 9.66 22.30 0.22 -0.19 16 22 C -0.18 -2.13 10.03 22.30 0.22 -1.90 16 23 C 0.11 2.02 7.30 22.33 0.16 2.18 16 24 F -0.14 -2.86 17.27 44.97 0.78 -2.08 16 25 C -0.21 -4.25 9.91 22.47 0.22 -4.03 16 26 C 0.14 2.78 6.47 22.52 0.15 2.92 16 27 O -0.32 -7.54 9.46 -72.90 -0.69 -8.23 16 28 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.38 19.32 7.67 -92.71 -0.71 18.61 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.42 4.62 8.31 -92.71 -0.77 3.85 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.12 0.55 7.97 -2.38 -0.02 0.54 16 39 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 40 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.18 0.22 8.06 -2.91 -0.02 0.19 16 42 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 43 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -77.30 367.69 2.17 -75.13 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.44 Total: 19.44 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 4.43 Total: -0.54 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.20 Total: -111.82 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.43 Total: -27.74 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -77.30 2.17 -75.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162529102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.375 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds