Wall clock time and date at job start Tue Mar 31 2020 13:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48498 * 109.47385 * 240.00275 * 3 2 1 5 5 H 1.48503 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47336 * 120.00175 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 197.78429 * 7 2 1 9 9 C 1.41208 * 120.00008 * 17.77697 * 7 2 1 10 10 C 1.40837 * 120.18128 * 24.71720 * 9 7 2 11 11 C 1.36433 * 119.81257 * 180.23043 * 10 9 7 12 12 C 1.39311 * 120.18745 * 359.49339 * 11 10 9 13 13 O 1.35676 * 119.82105 * 180.27884 * 12 11 10 14 14 C 1.42900 * 116.99767 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46747 * 179.97438 * 14 13 12 16 16 C 1.38875 * 120.33597 * 269.72067 * 15 14 13 17 17 C 1.38309 * 118.50664 * 179.78056 * 16 15 14 18 18 C 1.39128 * 119.09453 * 0.49511 * 17 16 15 19 19 N 1.39006 * 119.70776 * 179.77005 * 18 17 16 20 20 C 1.48220 * 110.99941 * 66.33529 * 19 18 17 21 21 C 1.51120 * 105.36106 * 144.90220 * 20 19 18 22 22 C 1.30963 * 109.45536 * 343.02706 * 21 20 19 23 23 C 1.48225 * 110.99934 * 179.97438 * 19 18 17 24 24 N 1.32405 * 120.59107 * 359.74373 * 18 17 16 25 25 C 1.31972 * 121.61837 * 0.02562 * 24 18 17 26 26 C 1.39318 * 120.36095 * 0.26208 * 12 11 10 27 27 C 1.36432 * 120.18845 * 359.97438 * 26 12 11 28 28 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.09414 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.90986 * 179.77322 * 11 10 9 31 31 H 1.08997 * 109.47498 * 299.99543 * 14 13 12 32 32 H 1.08994 * 109.47350 * 59.99907 * 14 13 12 33 33 H 1.07999 * 120.75023 * 0.02562 * 16 15 14 34 34 H 1.07997 * 120.45079 * 180.22195 * 17 16 15 35 35 H 1.09001 * 110.26968 * 263.87528 * 20 19 18 36 36 H 1.09004 * 110.27006 * 25.93369 * 20 19 18 37 37 H 1.07997 * 125.27448 * 163.00654 * 21 20 19 38 38 H 1.08003 * 125.27191 * 179.97438 * 22 21 20 39 39 H 1.08996 * 110.26699 * 334.06887 * 23 19 18 40 40 H 1.08999 * 110.26941 * 96.13134 * 23 19 18 41 41 H 1.07999 * 119.56951 * 180.02562 * 25 24 18 42 42 H 1.07997 * 119.90384 * 180.02562 * 26 12 11 43 43 H 1.07996 * 120.09717 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2851 9 6 1.3529 -2.4051 -0.3744 10 6 0.2239 -2.3594 -1.2152 11 6 -0.4064 -3.5168 -1.5679 12 6 0.0700 -4.7423 -1.1075 13 8 -0.5592 -5.8892 -1.4674 14 6 -0.0201 -7.1115 -0.9603 15 6 -0.8436 -8.2699 -1.4616 16 6 -1.9319 -8.7257 -0.7291 17 6 -2.6641 -9.7883 -1.2268 18 6 -2.2814 -10.3680 -2.4323 19 7 -3.0054 -11.4397 -2.9418 20 6 -4.3749 -11.0216 -3.3246 21 6 -4.7155 -11.8391 -4.5490 22 6 -3.6176 -12.3380 -5.0597 23 6 -2.4330 -11.9038 -4.2279 24 7 -1.2342 -9.9076 -3.0989 25 6 -0.5202 -8.8924 -2.6503 26 6 1.1892 -4.7966 -0.2796 27 6 1.8282 -3.6481 0.0864 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1443 -1.4105 -1.5764 30 1 -1.2745 -3.4833 -2.2097 31 1 1.0095 -7.2233 -1.3003 32 1 -0.0431 -7.0945 0.1292 33 1 -2.2028 -8.2584 0.2061 34 1 -3.5185 -10.1658 -0.6847 35 1 -5.0754 -11.2393 -2.5183 36 1 -4.3921 -9.9582 -3.5638 37 1 -5.7102 -11.9890 -4.9419 38 1 -3.5667 -12.9632 -5.9389 39 1 -1.9034 -11.0890 -4.7214 40 1 -1.7608 -12.7454 -4.0602 41 1 0.3275 -8.5434 -3.2212 42 1 1.5524 -5.7507 0.0728 43 1 2.6959 -3.6920 0.7279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163918094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:18 Heat of formation + Delta-G solvation = 67.158491 kcal Electronic energy + Delta-G solvation = -24850.868241 eV Core-core repulsion = 21248.287689 eV Total energy + Delta-G solvation = -3602.580552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12831 -39.23886 -38.50817 -36.43867 -33.79038 -33.19784 -32.59755 -30.53113 -29.60032 -28.96090 -28.78120 -26.14202 -24.68436 -23.95525 -23.00995 -21.45505 -20.75059 -20.51543 -19.64927 -17.92551 -17.37977 -17.03465 -16.82851 -15.94801 -15.72706 -15.16561 -14.95232 -14.61014 -14.26767 -14.17865 -13.96153 -13.57839 -13.33172 -13.06061 -12.96244 -12.61694 -12.42024 -12.25875 -12.15774 -12.00038 -11.69950 -11.63604 -11.25055 -11.08569 -10.91175 -10.69914 -10.55348 -10.04243 -9.95266 -9.85415 -9.68257 -9.38109 -9.18485 -9.03909 -8.34413 -7.66542 -7.05675 -6.74215 -4.27534 0.88402 1.15668 1.78863 2.77086 2.93345 3.06900 3.09297 3.20808 3.22107 3.62246 3.93714 4.10368 4.26252 4.32149 4.55132 4.59836 4.83104 4.84582 4.96515 5.06191 5.08345 5.11675 5.21896 5.39574 5.52922 5.55324 5.63488 5.64274 5.71425 5.78195 5.97994 6.02403 6.06614 6.20236 6.24160 6.32146 6.43322 6.69486 6.88996 6.96025 7.09214 7.16578 7.44020 7.53431 7.76596 7.78351 7.98487 8.18352 8.42115 8.62842 8.88029 8.96525 10.20276 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.035938 B = 0.001949 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.928394 B =14361.139220 C =14595.997650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.134 4.134 11 C -0.118 4.118 12 C -0.011 4.011 13 O -0.323 6.323 14 C 0.114 3.886 15 C -0.151 4.151 16 C -0.035 4.035 17 C -0.175 4.175 18 C 0.292 3.708 19 N -0.451 5.451 20 C 0.062 3.938 21 C -0.176 4.176 22 C -0.161 4.161 23 C 0.051 3.949 24 N -0.518 5.518 25 C 0.144 3.856 26 C -0.167 4.167 27 C -0.198 4.198 28 H 0.281 0.719 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.160 0.840 42 H 0.095 0.905 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 -18.883 -5.562 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.086 3.914 10 C -0.154 4.154 11 C -0.137 4.137 12 C -0.054 4.054 13 O -0.239 6.239 14 C 0.037 3.963 15 C -0.153 4.153 16 C -0.062 4.062 17 C -0.197 4.197 18 C 0.061 3.939 19 N -0.170 5.170 20 C -0.063 4.063 21 C -0.194 4.194 22 C -0.180 4.180 23 C -0.076 4.076 24 N -0.231 5.231 25 C -0.013 4.013 26 C -0.185 4.185 27 C -0.218 4.218 28 H 0.092 0.908 29 H 0.143 0.857 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.177 0.823 42 H 0.113 0.887 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.284 -19.575 -6.024 21.738 hybrid contribution 0.314 1.601 0.556 1.723 sum -6.971 -17.974 -5.469 20.039 Atomic orbital electron populations 1.69822 1.07505 1.29268 1.35856 1.25885 0.94730 1.01244 0.92363 0.86376 0.80125 0.80331 0.79921 1.18870 1.20394 1.19091 1.19434 0.98024 0.91229 1.40620 0.90561 1.17601 0.91854 0.92129 0.89798 1.20976 0.98519 0.96290 0.99572 1.19827 1.00734 0.90237 1.02924 1.18576 0.96991 0.84575 1.05216 1.85899 1.54789 1.12059 1.71181 1.21109 0.95397 0.81824 0.97948 1.20618 0.98610 0.98681 0.97425 1.21466 0.91913 0.93569 0.99211 1.21510 1.02936 0.98597 0.96664 1.19944 0.92302 0.89451 0.92184 1.62904 1.02879 1.25526 1.25686 1.22092 0.88892 0.98486 0.96856 1.23497 0.99317 0.99302 0.97283 1.23670 0.94625 0.99816 0.99883 1.22092 0.96477 1.01593 0.87391 1.67556 1.08239 1.13862 1.33410 1.22493 0.96991 0.89582 0.92278 1.20412 0.97790 0.97834 1.02499 1.20564 1.03121 0.92483 1.05608 0.90848 0.85686 0.88557 0.91925 0.92025 0.84195 0.84473 0.88792 0.91563 0.84218 0.84299 0.88613 0.89312 0.82307 0.88736 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.54 10.96 55.55 0.61 -19.93 16 2 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.18 9.04 -37.83 -0.34 -12.53 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.09 2.34 5.57 -106.80 -0.60 1.75 16 10 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 11 C -0.12 -2.84 9.92 -39.83 -0.40 -3.23 16 12 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 13 O -0.32 -6.43 10.11 -18.73 -0.19 -6.62 16 14 C 0.11 1.75 4.88 36.01 0.18 1.92 16 15 C -0.15 -2.05 5.53 -104.46 -0.58 -2.63 16 16 C -0.04 -0.43 9.85 -39.32 -0.39 -0.82 16 17 C -0.18 -2.00 9.57 -39.22 -0.38 -2.37 16 18 C 0.29 3.65 6.01 -155.02 -0.93 2.72 16 19 N -0.45 -4.98 5.58 -173.25 -0.97 -5.94 16 20 C 0.06 0.56 6.25 -4.04 -0.03 0.54 16 21 C -0.18 -1.35 10.95 -35.81 -0.39 -1.74 16 22 C -0.16 -1.28 10.95 -35.81 -0.39 -1.67 16 23 C 0.05 0.51 6.32 -4.04 -0.03 0.49 16 24 N -0.52 -6.94 8.15 -12.44 -0.10 -7.04 16 25 C 0.14 1.90 10.85 -17.57 -0.19 1.71 16 26 C -0.17 -3.68 8.96 -39.83 -0.36 -4.03 16 27 C -0.20 -4.79 9.74 -39.25 -0.38 -5.18 16 28 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 29 H 0.13 3.31 6.17 -52.49 -0.32 2.99 16 30 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 31 H 0.06 0.90 7.59 -51.93 -0.39 0.51 16 32 H 0.06 0.90 7.60 -51.93 -0.39 0.51 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.66 7.77 -51.93 -0.40 0.25 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.10 1.09 6.51 -51.93 -0.34 0.75 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.09 1.78 6.27 -52.49 -0.33 1.45 16 43 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -29.21 361.39 -11.65 -40.86 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.54 Total: 7.31 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -5.88 Total: -27.62 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: -0.46 Total: -32.92 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.19 Total: -6.62 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.21 -11.65 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163918094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.020 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds