Wall clock time and date at job start Tue Mar 31 2020 13:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48498 * 109.47385 * 240.00275 * 3 2 1 5 5 H 1.48503 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47336 * 120.00175 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 197.78429 * 7 2 1 9 9 C 1.41208 * 120.00008 * 17.77697 * 7 2 1 10 10 C 1.40837 * 120.18128 * 24.71720 * 9 7 2 11 11 C 1.36433 * 119.81257 * 180.23043 * 10 9 7 12 12 C 1.39311 * 120.18745 * 359.49339 * 11 10 9 13 13 O 1.35676 * 119.82105 * 180.27884 * 12 11 10 14 14 C 1.42900 * 116.99767 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46747 * 179.97438 * 14 13 12 16 16 C 1.38875 * 120.33597 * 269.72067 * 15 14 13 17 17 C 1.38309 * 118.50664 * 179.78056 * 16 15 14 18 18 C 1.39128 * 119.09453 * 0.49511 * 17 16 15 19 19 N 1.39006 * 119.70776 * 179.77005 * 18 17 16 20 20 C 1.48220 * 110.99941 * 66.33529 * 19 18 17 21 21 C 1.51120 * 105.36106 * 144.90220 * 20 19 18 22 22 C 1.30963 * 109.45536 * 343.02706 * 21 20 19 23 23 C 1.48225 * 110.99934 * 179.97438 * 19 18 17 24 24 N 1.32405 * 120.59107 * 359.74373 * 18 17 16 25 25 C 1.31972 * 121.61837 * 0.02562 * 24 18 17 26 26 C 1.39318 * 120.36095 * 0.26208 * 12 11 10 27 27 C 1.36432 * 120.18845 * 359.97438 * 26 12 11 28 28 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.09414 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.90986 * 179.77322 * 11 10 9 31 31 H 1.08997 * 109.47498 * 299.99543 * 14 13 12 32 32 H 1.08994 * 109.47350 * 59.99907 * 14 13 12 33 33 H 1.07999 * 120.75023 * 0.02562 * 16 15 14 34 34 H 1.07997 * 120.45079 * 180.22195 * 17 16 15 35 35 H 1.09001 * 110.26968 * 263.87528 * 20 19 18 36 36 H 1.09004 * 110.27006 * 25.93369 * 20 19 18 37 37 H 1.07997 * 125.27448 * 163.00654 * 21 20 19 38 38 H 1.08003 * 125.27191 * 179.97438 * 22 21 20 39 39 H 1.08996 * 110.26699 * 334.06887 * 23 19 18 40 40 H 1.08999 * 110.26941 * 96.13134 * 23 19 18 41 41 H 1.07999 * 119.56951 * 180.02562 * 25 24 18 42 42 H 1.07997 * 119.90384 * 180.02562 * 26 12 11 43 43 H 1.07996 * 120.09717 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2851 9 6 1.3529 -2.4051 -0.3744 10 6 0.2239 -2.3594 -1.2152 11 6 -0.4064 -3.5168 -1.5679 12 6 0.0700 -4.7423 -1.1075 13 8 -0.5592 -5.8892 -1.4674 14 6 -0.0201 -7.1115 -0.9603 15 6 -0.8436 -8.2699 -1.4616 16 6 -1.9319 -8.7257 -0.7291 17 6 -2.6641 -9.7883 -1.2268 18 6 -2.2814 -10.3680 -2.4323 19 7 -3.0054 -11.4397 -2.9418 20 6 -4.3749 -11.0216 -3.3246 21 6 -4.7155 -11.8391 -4.5490 22 6 -3.6176 -12.3380 -5.0597 23 6 -2.4330 -11.9038 -4.2279 24 7 -1.2342 -9.9076 -3.0989 25 6 -0.5202 -8.8924 -2.6503 26 6 1.1892 -4.7966 -0.2796 27 6 1.8282 -3.6481 0.0864 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1443 -1.4105 -1.5764 30 1 -1.2745 -3.4833 -2.2097 31 1 1.0095 -7.2233 -1.3003 32 1 -0.0431 -7.0945 0.1292 33 1 -2.2028 -8.2584 0.2061 34 1 -3.5185 -10.1658 -0.6847 35 1 -5.0754 -11.2393 -2.5183 36 1 -4.3921 -9.9582 -3.5638 37 1 -5.7102 -11.9890 -4.9419 38 1 -3.5667 -12.9632 -5.9389 39 1 -1.9034 -11.0890 -4.7214 40 1 -1.7608 -12.7454 -4.0602 41 1 0.3275 -8.5434 -3.2212 42 1 1.5524 -5.7507 0.0728 43 1 2.6959 -3.6920 0.7279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163918094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:17 Heat of formation + Delta-G solvation = 52.754967 kcal Electronic energy + Delta-G solvation = -24851.492825 eV Core-core repulsion = 21248.287689 eV Total energy + Delta-G solvation = -3603.205136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01907 -40.59126 -39.67831 -38.13327 -35.30208 -34.46636 -33.52240 -31.88761 -31.17740 -30.69152 -29.50498 -27.39381 -26.40274 -24.87373 -24.03846 -22.79705 -22.47489 -21.89648 -20.30167 -19.25230 -18.77649 -18.66155 -17.78707 -17.14181 -16.83543 -16.72469 -15.98454 -15.81098 -15.74348 -15.50346 -15.15136 -14.77988 -14.40735 -14.36741 -14.08782 -13.99489 -13.76436 -13.51417 -13.33649 -13.26078 -13.06487 -12.79860 -12.66503 -12.51879 -12.36949 -12.27679 -11.76108 -11.60072 -11.44470 -11.17748 -10.90805 -10.86433 -10.62515 -9.98009 -9.54896 -9.22412 -8.91878 -8.59025 -6.22017 -0.10322 0.20972 0.96294 1.04170 1.19481 1.40192 1.50834 1.55254 2.23006 2.26826 2.65651 2.73435 2.97282 3.29447 3.61854 3.70715 3.78533 3.79636 3.88852 3.98324 4.13283 4.29909 4.34515 4.36984 4.44005 4.44693 4.46872 4.56559 4.70615 4.76691 4.87421 4.88814 4.93675 5.07662 5.15396 5.22973 5.29108 5.34086 5.36843 5.41257 5.59114 5.65319 5.82386 5.89787 5.99363 6.06714 6.27470 6.57000 6.80265 6.82571 6.95909 7.10447 8.37323 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.035938 B = 0.001949 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.928394 B =14361.139220 C =14595.997650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.133 4.133 12 C 0.002 3.998 13 O -0.333 6.333 14 C 0.110 3.890 15 C -0.165 4.165 16 C -0.036 4.036 17 C -0.174 4.174 18 C 0.285 3.715 19 N -0.458 5.458 20 C 0.057 3.943 21 C -0.172 4.172 22 C -0.167 4.167 23 C 0.046 3.954 24 N -0.533 5.533 25 C 0.136 3.864 26 C -0.164 4.164 27 C -0.207 4.207 28 H 0.287 0.713 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.111 0.889 36 H 0.055 0.945 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.168 0.832 42 H 0.131 0.869 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 -20.327 -5.464 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.173 4.173 11 C -0.152 4.152 12 C -0.041 4.041 13 O -0.249 6.249 14 C 0.035 3.965 15 C -0.168 4.168 16 C -0.062 4.062 17 C -0.195 4.195 18 C 0.054 3.946 19 N -0.177 5.177 20 C -0.068 4.068 21 C -0.190 4.190 22 C -0.186 4.186 23 C -0.080 4.080 24 N -0.247 5.247 25 C -0.021 4.021 26 C -0.182 4.182 27 C -0.227 4.227 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.184 0.816 38 H 0.180 0.820 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.185 0.815 42 H 0.149 0.851 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.912 -21.053 -5.928 23.258 hybrid contribution 0.413 1.793 0.501 1.907 sum -7.499 -19.259 -5.428 21.369 Atomic orbital electron populations 1.69882 1.08939 1.30503 1.36469 1.26738 0.95494 1.04484 0.91395 0.85263 0.78742 0.75760 0.79996 1.18593 1.19388 1.18376 1.19688 0.98310 0.92394 1.42475 0.90552 1.17962 0.92687 0.93384 0.90759 1.20892 0.99357 0.96399 1.00654 1.19988 1.01144 0.90645 1.03374 1.18617 0.96508 0.85200 1.03814 1.85894 1.54994 1.12621 1.71406 1.21355 0.96298 0.80224 0.98638 1.20523 0.99567 0.98565 0.98171 1.21705 0.91292 0.93601 0.99623 1.21752 1.03356 0.98112 0.96315 1.20290 0.92137 0.89578 0.92583 1.62943 1.03715 1.24907 1.26133 1.22220 0.88115 0.98158 0.98302 1.23743 1.00477 0.98406 0.96396 1.23815 0.93619 1.00606 1.00516 1.22112 0.97498 1.00979 0.87421 1.67602 1.08919 1.14238 1.33908 1.22681 0.97339 0.89669 0.92385 1.20720 0.97103 0.98751 1.01640 1.20810 1.03625 0.92528 1.05695 0.90229 0.87318 0.87579 0.90757 0.90887 0.82585 0.82155 0.87105 0.92673 0.81603 0.82030 0.90339 0.89423 0.81486 0.85121 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.86 10.96 21.82 0.24 -43.62 16 2 C 0.03 1.66 5.14 85.24 0.44 2.10 16 3 Si 0.98 38.35 29.60 68.60 2.03 40.39 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.50 -26.93 9.04 23.40 0.21 -26.71 16 8 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.05 2.94 5.57 -21.28 -0.12 2.82 16 10 C -0.15 -8.21 8.64 22.48 0.19 -8.02 16 11 C -0.13 -6.45 9.92 22.11 0.22 -6.23 16 12 C 0.00 0.10 6.71 22.79 0.15 0.26 16 13 O -0.33 -12.80 10.11 -89.94 -0.91 -13.71 16 14 C 0.11 3.17 4.88 71.24 0.35 3.52 16 15 C -0.17 -4.27 5.53 -19.76 -0.11 -4.38 16 16 C -0.04 -0.82 9.85 22.44 0.22 -0.59 16 17 C -0.17 -3.64 9.57 22.50 0.22 -3.43 16 18 C 0.29 6.81 6.01 133.06 0.80 7.61 16 19 N -0.46 -9.51 5.58 -702.04 -3.92 -13.43 16 20 C 0.06 0.93 6.25 85.44 0.53 1.46 16 21 C -0.17 -2.23 10.95 25.82 0.28 -1.94 16 22 C -0.17 -2.34 10.95 25.82 0.28 -2.06 16 23 C 0.05 0.90 6.32 85.43 0.54 1.44 16 24 N -0.53 -14.01 8.15 -193.26 -1.57 -15.59 16 25 C 0.14 3.51 10.85 84.62 0.92 4.42 16 26 C -0.16 -7.00 8.96 22.11 0.20 -6.81 16 27 C -0.21 -10.01 9.74 22.48 0.22 -9.79 16 28 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 29 H 0.11 6.05 6.17 -2.91 -0.02 6.04 16 30 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 31 H 0.07 1.97 7.59 -2.39 -0.02 1.95 16 32 H 0.07 1.95 7.60 -2.39 -0.02 1.93 16 33 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.03 7.77 -2.38 -0.02 1.01 16 37 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.08 1.79 6.51 -2.39 -0.02 1.78 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.13 4.56 6.27 -2.91 -0.02 4.54 16 43 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -63.90 361.39 2.43 -61.47 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 1.02 Total: 30.82 kcal Atomic # 6 Polarization: -51.86 SS G_CDS: 5.55 Total: -46.32 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -5.26 Total: -72.65 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.91 Total: -13.71 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.39 kcal Total: -63.90 2.43 -61.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163918094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.226 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds