Wall clock time and date at job start Tue Mar 31 2020 13:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36020 * 117.00336 * 2 1 4 4 C 1.38510 * 120.38634 * 359.97438 * 3 2 1 5 5 N 1.31975 * 120.77551 * 179.76146 * 4 3 2 6 6 C 1.32355 * 121.67515 * 0.53088 * 5 4 3 7 7 N 1.39264 * 119.64585 * 179.74746 * 6 5 4 8 8 C 1.46955 * 111.00054 * 294.89825 * 7 6 5 9 9 C 1.53046 * 109.38289 * 183.17373 * 8 7 6 10 10 N 1.46961 * 109.36601 * 301.63497 * 9 8 7 11 11 C 1.46894 * 111.00101 * 183.16458 * 10 9 8 12 12 C 1.50707 * 109.46963 * 66.17781 * 11 10 9 13 13 H 1.08000 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99959 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00020 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47070 * 90.00002 * 16 14 12 18 18 H 1.48498 * 109.47281 * 210.00171 * 16 14 12 19 19 H 1.48498 * 109.47015 * 330.00241 * 16 14 12 20 20 C 1.46955 * 110.89958 * 59.28447 * 10 9 8 21 21 C 1.46959 * 110.99650 * 58.69898 * 7 6 5 22 22 C 1.39051 * 120.71133 * 359.47315 * 6 5 4 23 23 N 1.48006 * 120.42070 * 180.23440 * 22 6 5 24 24 O 1.21801 * 119.99132 * 185.43371 * 23 22 6 25 25 O 1.21796 * 120.00403 * 5.43207 * 23 22 6 26 26 C 1.38342 * 119.15069 * 0.25607 * 22 6 5 27 27 H 1.08996 * 109.46671 * 300.00189 * 1 2 3 28 28 H 1.09006 * 109.46794 * 59.99521 * 1 2 3 29 29 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.61172 * 0.02562 * 4 3 2 31 31 H 1.08998 * 109.49049 * 303.15526 * 8 7 6 32 32 H 1.09003 * 109.48693 * 63.20132 * 8 7 6 33 33 H 1.08995 * 109.48708 * 61.57686 * 9 8 7 34 34 H 1.08996 * 109.49075 * 181.64627 * 9 8 7 35 35 H 1.09002 * 109.47402 * 186.17333 * 11 10 9 36 36 H 1.08996 * 109.47534 * 306.18178 * 11 10 9 37 37 H 0.96996 * 119.99979 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.49501 * 180.72686 * 20 10 9 39 39 H 1.09003 * 109.48742 * 60.65710 * 20 10 9 40 40 H 1.09004 * 109.48585 * 296.77662 * 21 7 6 41 41 H 1.08997 * 109.49221 * 56.82211 * 21 7 6 42 42 H 1.08003 * 120.76949 * 179.97438 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.3001 2.3787 -0.0005 5 7 1.8913 3.5586 0.0042 6 6 3.2097 3.6754 -0.0009 7 7 3.7891 4.9418 -0.0009 8 6 3.4780 5.6632 -1.2428 9 6 4.1957 7.0149 -1.2384 10 7 3.7717 7.7880 -0.0627 11 6 4.3828 9.1238 -0.0627 12 6 3.8479 9.9209 -1.2244 13 1 3.1259 9.4795 -1.8954 14 6 4.2795 11.2142 -1.4301 15 7 5.1584 11.7520 -0.6127 16 14 3.6170 12.2020 -2.8705 17 1 2.3997 12.9395 -2.4468 18 1 4.6489 13.1688 -3.3240 19 1 3.2758 11.2828 -3.9858 20 6 4.0828 7.0666 1.1792 21 6 3.3646 5.7150 1.1745 22 6 4.0226 2.5472 -0.0004 23 7 5.4962 2.6853 -0.0009 24 8 6.2003 1.6965 -0.1004 25 8 6.0047 3.7876 0.0982 26 6 3.4363 1.2942 0.0000 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2216 2.3222 -0.0005 31 1 3.8130 5.0763 -2.0980 32 1 2.4019 5.8232 -1.3106 33 1 5.2731 6.8544 -1.1984 34 1 3.9429 7.5639 -2.1455 35 1 4.1412 9.6339 0.8698 36 1 5.4646 9.0285 -0.1550 37 1 5.4623 12.6616 -0.7577 38 1 3.7478 7.6534 2.0344 39 1 5.1589 6.9063 1.2468 40 1 2.2873 5.8759 1.1343 41 1 3.6167 5.1658 2.0816 42 1 4.0427 0.4004 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165054983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:04 Heat of formation + Delta-G solvation = 38.394769 kcal Electronic energy + Delta-G solvation = -27636.423354 eV Core-core repulsion = 23621.746250 eV Total energy + Delta-G solvation = -4014.677104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.32229 -41.20950 -39.55905 -38.04273 -36.40370 -35.02415 -33.54256 -32.52428 -30.70139 -30.55512 -28.49306 -27.48677 -26.60883 -25.30412 -23.57970 -23.15456 -22.60392 -21.44163 -19.75788 -19.40553 -18.77713 -17.86264 -17.60018 -17.48353 -17.24266 -16.55129 -16.29536 -15.21879 -15.10915 -14.90882 -14.47817 -14.28082 -14.06962 -13.84996 -13.71428 -13.42259 -13.00111 -12.71641 -12.19236 -12.12587 -11.79556 -11.49725 -11.29041 -11.17314 -10.96170 -10.93462 -10.82835 -10.79635 -10.66539 -10.55272 -10.46371 -10.27125 -9.75196 -9.18223 -9.11139 -8.63951 -8.40014 -7.21806 -6.00012 -4.01415 -0.48978 0.37033 1.18615 1.23030 2.45705 2.83968 3.19370 3.33783 3.39759 3.42917 3.68401 3.80480 4.13273 4.29268 4.44122 4.47470 4.50179 4.58186 4.87842 4.90966 5.05343 5.15948 5.32960 5.35756 5.42877 5.58429 5.77713 5.84010 5.94698 6.08872 6.32333 6.35262 6.42292 6.59214 6.67946 6.86391 6.99320 7.04831 7.32424 7.40337 7.74851 7.81534 8.10110 8.21467 8.56435 9.05865 9.62642 11.10850 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.003043 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.651245 B = 9197.904252 C = 9967.068617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.070 3.930 4 C 0.080 3.920 5 N -0.458 5.458 6 C 0.338 3.662 7 N -0.477 5.477 8 C 0.067 3.933 9 C 0.070 3.930 10 N -0.538 5.538 11 C 0.194 3.806 12 C -0.507 4.507 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.058 3.942 21 C 0.070 3.930 22 C -0.038 4.038 23 N 0.029 4.971 24 O -0.194 6.194 25 O -0.074 6.074 26 C -0.045 4.045 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.176 0.824 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.092 0.908 35 H 0.030 0.970 36 H -0.005 1.005 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.412 -24.543 2.452 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.215 6.215 3 C 0.021 3.979 4 C -0.081 4.081 5 N -0.172 5.172 6 C 0.108 3.892 7 N -0.202 5.202 8 C -0.059 4.059 9 C -0.059 4.059 10 N -0.264 5.264 11 C 0.069 3.931 12 C -0.546 4.546 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.071 4.071 21 C -0.056 4.056 22 C -0.126 4.126 23 N 0.553 4.447 24 O -0.396 6.396 25 O -0.309 6.309 26 C -0.073 4.073 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.193 0.807 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.013 0.987 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.440 -24.007 2.474 26.295 hybrid contribution 0.248 -0.079 -0.706 0.753 sum -10.192 -24.086 1.767 26.213 Atomic orbital electron populations 1.23266 0.76956 1.05186 1.02022 1.86145 1.22319 1.24590 1.88438 1.19660 0.91648 0.86578 0.99966 1.23322 1.01530 0.86586 0.96658 1.68284 1.10447 1.26597 1.11845 1.19882 0.86032 0.92226 0.91066 1.60750 1.54280 0.99331 1.05847 1.22350 1.00152 0.95017 0.88421 1.21983 0.97125 0.90523 0.96295 1.62303 1.59931 1.04320 0.99799 1.19702 0.92620 0.82746 0.98015 1.21148 1.24519 0.97621 1.11326 0.91954 1.24983 0.95181 0.97734 0.96678 1.69959 1.31369 1.14924 1.37459 0.86514 0.78496 0.79880 0.82586 1.20718 1.21335 1.19903 1.22058 0.98156 0.92008 0.94902 1.22235 0.99368 0.93985 0.90029 1.21736 0.82320 0.94739 1.13762 1.43118 1.01975 1.00941 0.98672 1.94530 1.59823 1.29811 1.55483 1.94699 1.75240 1.12415 1.48529 1.20587 0.92825 0.97509 0.96342 0.91903 0.91875 0.87171 0.80710 0.91480 0.92499 0.94316 0.89015 0.95143 0.98721 0.92926 0.90477 0.94155 0.92366 0.91397 0.81005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.82 101.05 0.99 1.05 16 2 O -0.30 -2.09 10.51 -19.81 -0.21 -2.29 16 3 C 0.07 0.59 6.71 -39.12 -0.26 0.33 16 4 C 0.08 0.68 10.21 -17.39 -0.18 0.51 16 5 N -0.46 -5.60 9.64 -12.28 -0.12 -5.71 16 6 C 0.34 4.65 5.33 -154.83 -0.83 3.82 16 7 N -0.48 -7.48 2.60 -172.99 -0.45 -7.93 16 8 C 0.07 1.09 5.47 -3.77 -0.02 1.07 16 9 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 10 N -0.54 -11.57 4.70 -235.91 -1.11 -12.68 16 11 C 0.19 5.04 4.72 -4.98 -0.02 5.01 16 12 C -0.51 -14.14 8.47 -34.44 -0.29 -14.43 16 13 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.06 1.06 5.61 -3.77 -0.02 1.03 16 21 C 0.07 1.10 5.41 -3.76 -0.02 1.08 16 22 C -0.04 -0.50 6.88 -79.61 -0.55 -1.04 16 23 N 0.03 0.44 4.45 34.13 0.15 0.59 16 24 O -0.19 -2.92 18.53 -29.46 -0.55 -3.47 16 25 O -0.07 -1.27 17.15 -29.46 -0.51 -1.77 16 26 C -0.05 -0.46 9.62 -39.18 -0.38 -0.83 16 27 H 0.06 0.12 7.68 -51.93 -0.40 -0.27 16 28 H 0.06 0.13 7.67 -51.93 -0.40 -0.27 16 29 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.18 0.90 6.30 -52.49 -0.33 0.57 16 31 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.06 0.95 8.02 -51.93 -0.42 0.54 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 35 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 36 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 41 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 42 H 0.17 1.47 7.70 -52.48 -0.40 1.07 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -32.29 353.28 -9.03 -41.32 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -5.59 Total: -4.42 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.69 Total: 0.42 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.79 Total: -51.70 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -1.26 Total: -7.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.29 -9.03 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165054983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.717 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds