Wall clock time and date at job start Tue Mar 31 2020 13:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36020 * 117.00336 * 2 1 4 4 C 1.38510 * 120.38634 * 359.97438 * 3 2 1 5 5 N 1.31975 * 120.77551 * 179.76146 * 4 3 2 6 6 C 1.32355 * 121.67515 * 0.53088 * 5 4 3 7 7 N 1.39264 * 119.64585 * 179.74746 * 6 5 4 8 8 C 1.46955 * 111.00054 * 294.89825 * 7 6 5 9 9 C 1.53046 * 109.38289 * 183.17373 * 8 7 6 10 10 N 1.46961 * 109.36601 * 301.63497 * 9 8 7 11 11 C 1.46894 * 111.00101 * 183.16458 * 10 9 8 12 12 C 1.50707 * 109.46963 * 66.17781 * 11 10 9 13 13 H 1.08000 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99959 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00020 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47070 * 90.00002 * 16 14 12 18 18 H 1.48498 * 109.47281 * 210.00171 * 16 14 12 19 19 H 1.48498 * 109.47015 * 330.00241 * 16 14 12 20 20 C 1.46955 * 110.89958 * 59.28447 * 10 9 8 21 21 C 1.46959 * 110.99650 * 58.69898 * 7 6 5 22 22 C 1.39051 * 120.71133 * 359.47315 * 6 5 4 23 23 N 1.48006 * 120.42070 * 180.23440 * 22 6 5 24 24 O 1.21801 * 119.99132 * 185.43371 * 23 22 6 25 25 O 1.21796 * 120.00403 * 5.43207 * 23 22 6 26 26 C 1.38342 * 119.15069 * 0.25607 * 22 6 5 27 27 H 1.08996 * 109.46671 * 300.00189 * 1 2 3 28 28 H 1.09006 * 109.46794 * 59.99521 * 1 2 3 29 29 H 1.08998 * 109.47352 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.61172 * 0.02562 * 4 3 2 31 31 H 1.08998 * 109.49049 * 303.15526 * 8 7 6 32 32 H 1.09003 * 109.48693 * 63.20132 * 8 7 6 33 33 H 1.08995 * 109.48708 * 61.57686 * 9 8 7 34 34 H 1.08996 * 109.49075 * 181.64627 * 9 8 7 35 35 H 1.09002 * 109.47402 * 186.17333 * 11 10 9 36 36 H 1.08996 * 109.47534 * 306.18178 * 11 10 9 37 37 H 0.96996 * 119.99979 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.49501 * 180.72686 * 20 10 9 39 39 H 1.09003 * 109.48742 * 60.65710 * 20 10 9 40 40 H 1.09004 * 109.48585 * 296.77662 * 21 7 6 41 41 H 1.08997 * 109.49221 * 56.82211 * 21 7 6 42 42 H 1.08003 * 120.76949 * 179.97438 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.3001 2.3787 -0.0005 5 7 1.8913 3.5586 0.0042 6 6 3.2097 3.6754 -0.0009 7 7 3.7891 4.9418 -0.0009 8 6 3.4780 5.6632 -1.2428 9 6 4.1957 7.0149 -1.2384 10 7 3.7717 7.7880 -0.0627 11 6 4.3828 9.1238 -0.0627 12 6 3.8479 9.9209 -1.2244 13 1 3.1259 9.4795 -1.8954 14 6 4.2795 11.2142 -1.4301 15 7 5.1584 11.7520 -0.6127 16 14 3.6170 12.2020 -2.8705 17 1 2.3997 12.9395 -2.4468 18 1 4.6489 13.1688 -3.3240 19 1 3.2758 11.2828 -3.9858 20 6 4.0828 7.0666 1.1792 21 6 3.3646 5.7150 1.1745 22 6 4.0226 2.5472 -0.0004 23 7 5.4962 2.6853 -0.0009 24 8 6.2003 1.6965 -0.1004 25 8 6.0047 3.7876 0.0982 26 6 3.4363 1.2942 0.0000 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2216 2.3222 -0.0005 31 1 3.8130 5.0763 -2.0980 32 1 2.4019 5.8232 -1.3106 33 1 5.2731 6.8544 -1.1984 34 1 3.9429 7.5639 -2.1455 35 1 4.1412 9.6339 0.8698 36 1 5.4646 9.0285 -0.1550 37 1 5.4623 12.6616 -0.7577 38 1 3.7478 7.6534 2.0344 39 1 5.1589 6.9063 1.2468 40 1 2.2873 5.8759 1.1343 41 1 3.6167 5.1658 2.0816 42 1 4.0427 0.4004 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165054983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:03 Heat of formation + Delta-G solvation = 16.671214 kcal Electronic energy + Delta-G solvation = -27637.365358 eV Core-core repulsion = 23621.746250 eV Total energy + Delta-G solvation = -4015.619108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.35495 -42.11568 -40.53555 -39.12984 -37.56404 -36.50842 -34.55196 -34.40810 -32.00922 -31.74781 -29.69691 -28.50986 -27.51987 -26.85356 -24.79412 -24.57504 -23.63036 -23.15647 -20.83710 -20.63125 -19.85467 -18.81056 -18.60378 -18.46661 -18.40491 -18.09572 -17.06845 -16.77204 -16.29379 -15.94593 -15.86028 -15.62403 -15.42603 -15.10165 -14.67744 -14.56604 -14.43568 -13.95812 -13.45208 -13.16301 -13.04837 -12.79388 -12.67062 -12.63041 -12.46199 -12.32994 -12.31676 -12.20585 -12.14567 -12.09678 -11.67502 -11.62272 -11.31565 -11.15647 -10.59498 -9.88112 -9.78335 -9.05051 -8.18247 -6.28447 -1.45429 -0.44561 0.13663 0.23899 1.42701 1.44353 1.55307 1.88292 2.00962 2.16939 2.41968 2.94906 3.01369 3.13643 3.24400 3.32447 3.58710 3.62752 3.92125 4.07632 4.18066 4.22117 4.34028 4.37673 4.38965 4.41173 4.54588 4.56885 4.68611 4.78271 4.90212 4.98525 5.00380 5.20542 5.22037 5.28529 5.59932 5.66123 5.79431 5.90519 6.05672 6.20438 6.30260 6.54962 6.59871 6.87010 7.41057 8.93155 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.003043 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.651245 B = 9197.904252 C = 9967.068617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.307 6.307 3 C 0.094 3.906 4 C 0.091 3.909 5 N -0.473 5.473 6 C 0.319 3.681 7 N -0.488 5.488 8 C 0.083 3.917 9 C 0.074 3.926 10 N -0.540 5.540 11 C 0.210 3.790 12 C -0.522 4.522 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.263 1.263 20 C 0.058 3.942 21 C 0.084 3.916 22 C -0.046 4.046 23 N 0.033 4.967 24 O -0.179 6.179 25 O -0.135 6.135 26 C -0.047 4.047 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.216 0.784 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.007 0.993 36 H -0.038 1.038 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.395 -27.142 1.722 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.219 6.219 3 C 0.044 3.956 4 C -0.069 4.069 5 N -0.186 5.186 6 C 0.090 3.910 7 N -0.212 5.212 8 C -0.043 4.043 9 C -0.055 4.055 10 N -0.265 5.265 11 C 0.083 3.917 12 C -0.560 4.560 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.071 4.071 21 C -0.042 4.042 22 C -0.134 4.134 23 N 0.552 4.448 24 O -0.389 6.389 25 O -0.356 6.356 26 C -0.074 4.074 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.148 0.852 30 H 0.232 0.768 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.095 0.905 35 H 0.025 0.975 36 H -0.021 1.021 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.424 -26.540 1.759 29.794 hybrid contribution 1.024 0.415 -0.436 1.188 sum -12.401 -26.125 1.322 28.949 Atomic orbital electron populations 1.23687 0.74518 1.07136 1.03461 1.86183 1.24714 1.23402 1.87559 1.19604 0.90969 0.87348 0.97635 1.23932 1.03200 0.85401 0.94395 1.68258 1.09406 1.28443 1.12497 1.19621 0.86867 0.91059 0.93478 1.60546 1.55401 1.00229 1.05061 1.22082 0.99357 0.93182 0.89719 1.21905 0.96548 0.92152 0.94888 1.62237 1.59248 1.03222 1.01798 1.19348 0.90699 0.85122 0.96489 1.21447 1.24584 0.98207 1.11800 0.91725 1.25927 0.95284 0.98912 0.99580 1.70096 1.32635 1.15429 1.39398 0.85369 0.77920 0.78192 0.79043 1.19808 1.20927 1.18740 1.22111 0.97859 0.93586 0.93528 1.22049 0.98677 0.92379 0.91117 1.21718 0.80294 0.95786 1.15617 1.43441 1.03137 1.00457 0.97785 1.94483 1.60907 1.29592 1.53935 1.94717 1.76304 1.12866 1.51699 1.20771 0.93938 0.96703 0.95990 0.90365 0.90425 0.85222 0.76801 0.90259 0.92485 0.96065 0.90464 0.97498 1.02076 0.92705 0.90102 0.95512 0.92289 0.89670 0.79585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.87 10.51 -93.78 -0.99 -3.86 16 3 C 0.09 1.23 6.71 22.57 0.15 1.38 16 4 C 0.09 1.20 10.21 84.74 0.87 2.07 16 5 N -0.47 -10.31 9.64 -192.77 -1.86 -12.17 16 6 C 0.32 8.39 5.33 132.97 0.71 9.10 16 7 N -0.49 -15.36 2.60 -701.23 -1.82 -17.18 16 8 C 0.08 2.74 5.47 86.31 0.47 3.22 16 9 C 0.07 3.03 5.43 86.31 0.47 3.50 16 10 N -0.54 -24.26 4.70 -900.30 -4.23 -28.50 16 11 C 0.21 11.50 4.72 85.56 0.40 11.90 16 12 C -0.52 -29.95 8.47 25.60 0.22 -29.73 16 13 H 0.06 3.60 7.13 -2.91 -0.02 3.58 16 14 C 0.00 0.05 5.46 84.65 0.46 0.51 16 15 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 16 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 C 0.06 2.21 5.61 86.31 0.48 2.69 16 21 C 0.08 2.63 5.41 86.31 0.47 3.10 16 22 C -0.05 -1.15 6.88 36.60 0.25 -0.90 16 23 N 0.03 1.00 4.45 -45.95 -0.20 0.80 16 24 O -0.18 -5.29 18.53 18.89 0.35 -4.94 16 25 O -0.13 -4.80 17.15 18.89 0.32 -4.48 16 26 C -0.05 -0.83 9.62 22.53 0.22 -0.61 16 27 H 0.08 -0.10 7.68 -2.39 -0.02 -0.12 16 28 H 0.08 -0.09 7.67 -2.38 -0.02 -0.11 16 29 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.22 1.02 6.30 -2.91 -0.02 1.00 16 31 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 32 H 0.06 1.88 8.02 -2.39 -0.02 1.86 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 3.35 6.79 -2.39 -0.02 3.33 16 35 H 0.01 0.41 8.03 -2.39 -0.02 0.39 16 36 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.08 2.97 8.07 -2.39 -0.02 2.95 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.84 7.91 -2.38 -0.02 1.82 16 41 H 0.08 2.37 8.13 -2.39 -0.02 2.35 16 42 H 0.19 2.67 7.70 -2.91 -0.02 2.65 16 Total: -1.00 -72.99 353.28 1.21 -71.78 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 1.04 Total: 1.44 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 6.28 Total: 7.35 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -7.83 Total: -113.99 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.31 Total: -13.27 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -72.99 1.21 -71.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165054983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.454 kcal (2) G-P(sol) polarization free energy of solvation -72.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds