Wall clock time and date at job start Tue Mar 31 2020 13:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35748 * 117.00022 * 2 1 4 4 C 1.38956 * 120.80470 * 359.97438 * 3 2 1 5 5 C 1.38859 * 119.03021 * 180.02562 * 4 3 2 6 6 N 1.39029 * 119.67458 * 180.02562 * 5 4 3 7 7 C 1.46963 * 110.99877 * 303.80465 * 6 5 4 8 8 C 1.53054 * 109.36445 * 176.81189 * 7 6 5 9 9 N 1.46959 * 109.36329 * 58.40062 * 8 7 6 10 10 C 1.46900 * 110.99598 * 176.81416 * 9 8 7 11 11 C 1.50695 * 109.47391 * 58.97957 * 10 9 8 12 12 H 1.08005 * 120.00280 * 5.00587 * 11 10 9 13 13 C 1.37877 * 120.00219 * 185.01223 * 11 10 9 14 14 N 1.31516 * 120.00039 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00243 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47356 * 59.99496 * 15 13 11 17 17 H 1.48505 * 109.47093 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47238 * 299.99282 * 15 13 11 19 19 C 1.46961 * 110.87773 * 300.67898 * 9 8 7 20 20 C 1.46948 * 111.00164 * 180.02562 * 6 5 4 21 21 N 1.32512 * 120.64991 * 0.28150 * 5 4 3 22 22 C 1.32025 * 121.75886 * 359.42937 * 21 5 4 23 23 C 1.37841 * 120.91102 * 0.56753 * 22 21 5 24 24 N 1.48007 * 120.37318 * 179.69893 * 23 22 21 25 25 O 1.21799 * 119.99796 * 0.02723 * 24 23 22 26 26 O 1.21802 * 120.00166 * 180.02562 * 24 23 22 27 27 H 1.08999 * 109.47609 * 300.00291 * 1 2 3 28 28 H 1.08998 * 109.47060 * 60.00299 * 1 2 3 29 29 H 1.09000 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.48446 * 0.05118 * 4 3 2 31 31 H 1.08999 * 109.48842 * 296.77789 * 7 6 5 32 32 H 1.09002 * 109.49184 * 56.84312 * 7 6 5 33 33 H 1.09003 * 109.48771 * 298.43563 * 8 7 6 34 34 H 1.09000 * 109.48663 * 178.36913 * 8 7 6 35 35 H 1.08997 * 109.46575 * 178.97715 * 10 9 8 36 36 H 1.08993 * 109.47293 * 298.97485 * 10 9 8 37 37 H 0.96991 * 120.00544 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.49056 * 299.35437 * 19 9 8 39 39 H 1.09001 * 109.48284 * 179.29061 * 19 9 8 40 40 H 1.09009 * 109.48724 * 303.15232 * 20 6 5 41 41 H 1.08997 * 109.49270 * 63.19797 * 20 6 5 42 42 H 1.08003 * 119.54299 * 180.28900 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3049 2.3854 -0.0005 5 6 1.9733 3.6025 -0.0011 6 7 1.2459 4.7873 -0.0011 7 6 0.3194 4.8364 -1.1408 8 6 -0.5166 6.1160 -1.0605 9 7 0.3770 7.2827 -1.0612 10 6 -0.3917 8.5345 -1.0612 11 6 -1.2780 8.5798 0.1568 12 1 -1.2125 7.8003 0.9016 13 6 -2.1725 9.6161 0.3204 14 7 -2.2519 10.5655 -0.5863 15 14 -3.2715 9.6719 1.8298 16 1 -2.4308 9.7272 3.0525 17 1 -4.1356 10.8781 1.7686 18 1 -4.1217 8.4550 1.8683 19 6 1.3035 7.2335 0.0785 20 6 2.1394 5.9540 -0.0023 21 7 3.2977 3.6459 -0.0067 22 6 4.0290 2.5467 -0.0007 23 6 3.4367 1.3021 -0.0001 24 7 4.2680 0.0776 -0.0001 25 8 5.4828 0.1663 -0.0002 26 8 3.7374 -1.0188 0.0000 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2254 2.3532 -0.0001 31 1 0.8870 4.8307 -2.0713 32 1 -0.3399 3.9689 -1.1112 33 1 -1.1048 6.1091 -0.1428 34 1 -1.1842 6.1687 -1.9205 35 1 0.2938 9.3817 -1.0434 36 1 -1.0064 8.5834 -1.9599 37 1 -2.8809 11.2948 -0.4711 38 1 0.7359 7.2392 1.0091 39 1 1.9627 8.1011 0.0489 40 1 2.8073 5.9013 0.8576 41 1 2.7276 5.9606 -0.9198 42 1 5.1063 2.6238 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:07 Heat of formation + Delta-G solvation = 24.346606 kcal Electronic energy + Delta-G solvation = -27343.654056 eV Core-core repulsion = 23328.367779 eV Total energy + Delta-G solvation = -4015.286278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.36174 -41.24980 -39.64913 -38.35374 -36.49745 -35.56956 -32.76254 -32.43266 -31.42301 -30.65368 -28.25916 -28.20819 -26.24592 -25.04302 -24.15694 -22.84330 -22.66958 -21.74703 -19.74625 -19.58892 -18.89960 -18.41646 -17.65279 -17.40701 -16.66074 -16.40042 -16.33801 -15.49149 -15.23168 -14.92139 -14.86309 -14.54704 -14.27249 -13.94137 -13.79610 -13.26639 -13.18598 -12.34836 -12.27369 -12.19268 -12.03621 -11.57954 -11.34523 -11.27693 -11.13727 -11.13166 -11.03698 -10.85009 -10.73371 -10.43826 -10.40435 -10.12817 -10.01967 -9.76291 -9.70214 -8.68655 -8.55536 -7.41847 -6.15604 -4.25458 -0.31667 0.57372 1.15929 1.29866 2.33663 2.87777 3.19379 3.21794 3.25579 3.27193 3.76624 3.93516 4.22080 4.29625 4.39156 4.64553 4.65487 4.74320 4.77593 4.95732 5.04840 5.07150 5.13917 5.20872 5.39480 5.46242 5.48667 5.73220 5.76848 5.95791 6.17515 6.31849 6.41200 6.45211 6.52149 6.55611 6.77074 7.07083 7.31286 7.37198 7.63827 7.74438 7.82273 8.03710 8.12824 8.83810 9.42217 10.89849 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.002760 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.906663 B =10143.021649 C =10746.112686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.276 6.276 3 C 0.252 3.748 4 C -0.291 4.291 5 C 0.400 3.600 6 N -0.467 5.467 7 C 0.063 3.937 8 C 0.062 3.938 9 N -0.544 5.544 10 C 0.188 3.812 11 C -0.555 4.555 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.057 3.943 20 C 0.066 3.934 21 N -0.528 5.528 22 C 0.244 3.756 23 C -0.174 4.174 24 N 0.050 4.950 25 O -0.183 6.183 26 O -0.150 6.150 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.162 0.838 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 -17.744 -0.134 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.184 6.184 3 C 0.195 3.805 4 C -0.315 4.315 5 C 0.169 3.831 6 N -0.181 5.181 7 C -0.062 4.062 8 C -0.067 4.067 9 N -0.268 5.268 10 C 0.063 3.937 11 C -0.594 4.594 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.203 1.203 19 C -0.072 4.072 20 C -0.060 4.060 21 N -0.246 5.246 22 C 0.080 3.920 23 C -0.265 4.265 24 N 0.566 4.434 25 O -0.392 6.392 26 O -0.368 6.368 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.180 0.820 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.262 -16.263 -0.227 17.428 hybrid contribution -1.332 -0.776 1.196 1.951 sum 4.930 -17.039 0.969 17.764 Atomic orbital electron populations 1.23401 0.76436 1.05489 1.02489 1.86377 1.22918 1.23939 1.85135 1.18707 0.89311 0.86242 0.86198 1.21613 1.02415 0.89803 1.17687 1.20165 0.87964 0.90939 0.84007 1.59069 1.18045 1.00779 1.40199 1.22588 0.94057 1.00702 0.88847 1.21989 0.94141 0.88038 1.02528 1.62760 1.19496 1.04287 1.40262 1.19741 0.92010 0.85176 0.96780 1.21678 1.21297 1.09024 1.07377 0.92437 1.24954 0.96960 0.95435 0.96283 1.69920 1.36657 1.11854 1.34291 0.86694 0.80614 0.77512 0.83429 1.20218 1.21137 1.20263 1.22071 0.95426 0.94963 0.94689 1.22345 0.93587 0.87311 1.02783 1.68215 1.06012 1.29217 1.21196 1.22582 1.01655 0.83661 0.84099 1.21558 0.88514 0.87480 1.28931 1.43066 1.00996 1.02008 0.97341 1.94524 0.95730 1.93705 1.55197 1.94575 1.75892 1.13253 1.53066 0.91451 0.91519 0.86762 0.82040 0.92365 0.90091 0.92630 0.90074 0.95185 0.94542 0.92606 0.93193 0.90249 0.89567 0.91944 0.79366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.84 101.05 0.99 1.09 16 2 O -0.28 -2.83 8.66 -40.52 -0.35 -3.18 16 3 C 0.25 2.79 6.71 -38.87 -0.26 2.53 16 4 C -0.29 -3.01 8.21 -39.09 -0.32 -3.33 16 5 C 0.40 4.91 6.40 -155.00 -0.99 3.92 16 6 N -0.47 -6.32 4.73 -173.08 -0.82 -7.14 16 7 C 0.06 0.81 5.37 -3.76 -0.02 0.79 16 8 C 0.06 1.04 5.24 -3.76 -0.02 1.02 16 9 N -0.54 -10.44 4.92 -235.91 -1.16 -11.60 16 10 C 0.19 4.47 5.14 -4.98 -0.03 4.45 16 11 C -0.55 -14.22 7.66 -34.44 -0.26 -14.49 16 12 H 0.06 1.46 5.82 -52.48 -0.31 1.16 16 13 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 15 Si 0.89 20.47 29.54 -169.99 -5.02 15.44 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.06 1.00 5.32 -3.76 -0.02 0.98 16 20 C 0.07 0.95 4.78 -3.77 -0.02 0.93 16 21 N -0.53 -6.44 8.70 -12.51 -0.11 -6.55 16 22 C 0.24 2.65 10.70 -17.61 -0.19 2.46 16 23 C -0.17 -2.09 6.89 -79.65 -0.55 -2.64 16 24 N 0.05 0.69 4.45 34.11 0.15 0.84 16 25 O -0.18 -2.50 18.46 -29.46 -0.54 -3.05 16 26 O -0.15 -2.19 17.36 -36.33 -0.63 -2.82 16 27 H 0.07 0.34 7.71 -51.93 -0.40 -0.06 16 28 H 0.07 0.31 7.71 -51.93 -0.40 -0.09 16 29 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.16 1.33 5.57 -52.48 -0.29 1.04 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.83 6.78 -51.93 -0.35 0.47 16 33 H 0.06 1.04 6.62 -51.93 -0.34 0.70 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.03 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.05 0.97 6.78 -51.93 -0.35 0.62 16 39 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 40 H 0.09 1.18 7.83 -51.92 -0.41 0.77 16 41 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 42 H 0.19 1.59 7.60 -52.48 -0.40 1.20 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -29.88 346.71 -9.64 -39.52 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.34 Total: -1.83 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.78 Total: -0.61 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -1.20 Total: -48.70 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -1.53 Total: -9.05 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.88 -9.64 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.870 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds