Wall clock time and date at job start Tue Mar 31 2020 13:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35748 * 117.00022 * 2 1 4 4 C 1.38956 * 120.80470 * 359.97438 * 3 2 1 5 5 C 1.38859 * 119.03021 * 180.02562 * 4 3 2 6 6 N 1.39029 * 119.67458 * 180.02562 * 5 4 3 7 7 C 1.46963 * 110.99877 * 303.80465 * 6 5 4 8 8 C 1.53054 * 109.36445 * 176.81189 * 7 6 5 9 9 N 1.46959 * 109.36329 * 58.40062 * 8 7 6 10 10 C 1.46900 * 110.99598 * 176.81416 * 9 8 7 11 11 C 1.50695 * 109.47391 * 58.97957 * 10 9 8 12 12 H 1.08005 * 120.00280 * 5.00587 * 11 10 9 13 13 C 1.37877 * 120.00219 * 185.01223 * 11 10 9 14 14 N 1.31516 * 120.00039 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00243 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47356 * 59.99496 * 15 13 11 17 17 H 1.48505 * 109.47093 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47238 * 299.99282 * 15 13 11 19 19 C 1.46961 * 110.87773 * 300.67898 * 9 8 7 20 20 C 1.46948 * 111.00164 * 180.02562 * 6 5 4 21 21 N 1.32512 * 120.64991 * 0.28150 * 5 4 3 22 22 C 1.32025 * 121.75886 * 359.42937 * 21 5 4 23 23 C 1.37841 * 120.91102 * 0.56753 * 22 21 5 24 24 N 1.48007 * 120.37318 * 179.69893 * 23 22 21 25 25 O 1.21799 * 119.99796 * 0.02723 * 24 23 22 26 26 O 1.21802 * 120.00166 * 180.02562 * 24 23 22 27 27 H 1.08999 * 109.47609 * 300.00291 * 1 2 3 28 28 H 1.08998 * 109.47060 * 60.00299 * 1 2 3 29 29 H 1.09000 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.48446 * 0.05118 * 4 3 2 31 31 H 1.08999 * 109.48842 * 296.77789 * 7 6 5 32 32 H 1.09002 * 109.49184 * 56.84312 * 7 6 5 33 33 H 1.09003 * 109.48771 * 298.43563 * 8 7 6 34 34 H 1.09000 * 109.48663 * 178.36913 * 8 7 6 35 35 H 1.08997 * 109.46575 * 178.97715 * 10 9 8 36 36 H 1.08993 * 109.47293 * 298.97485 * 10 9 8 37 37 H 0.96991 * 120.00544 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.49056 * 299.35437 * 19 9 8 39 39 H 1.09001 * 109.48284 * 179.29061 * 19 9 8 40 40 H 1.09009 * 109.48724 * 303.15232 * 20 6 5 41 41 H 1.08997 * 109.49270 * 63.19797 * 20 6 5 42 42 H 1.08003 * 119.54299 * 180.28900 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3049 2.3854 -0.0005 5 6 1.9733 3.6025 -0.0011 6 7 1.2459 4.7873 -0.0011 7 6 0.3194 4.8364 -1.1408 8 6 -0.5166 6.1160 -1.0605 9 7 0.3770 7.2827 -1.0612 10 6 -0.3917 8.5345 -1.0612 11 6 -1.2780 8.5798 0.1568 12 1 -1.2125 7.8003 0.9016 13 6 -2.1725 9.6161 0.3204 14 7 -2.2519 10.5655 -0.5863 15 14 -3.2715 9.6719 1.8298 16 1 -2.4308 9.7272 3.0525 17 1 -4.1356 10.8781 1.7686 18 1 -4.1217 8.4550 1.8683 19 6 1.3035 7.2335 0.0785 20 6 2.1394 5.9540 -0.0023 21 7 3.2977 3.6459 -0.0067 22 6 4.0290 2.5467 -0.0007 23 6 3.4367 1.3021 -0.0001 24 7 4.2680 0.0776 -0.0001 25 8 5.4828 0.1663 -0.0002 26 8 3.7374 -1.0188 0.0000 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2254 2.3532 -0.0001 31 1 0.8870 4.8307 -2.0713 32 1 -0.3399 3.9689 -1.1112 33 1 -1.1048 6.1091 -0.1428 34 1 -1.1842 6.1687 -1.9205 35 1 0.2938 9.3817 -1.0434 36 1 -1.0064 8.5834 -1.9599 37 1 -2.8809 11.2948 -0.4711 38 1 0.7359 7.2392 1.0091 39 1 1.9627 8.1011 0.0489 40 1 2.8073 5.9013 0.8576 41 1 2.7276 5.9606 -0.9198 42 1 5.1063 2.6238 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:06 Heat of formation + Delta-G solvation = 5.091363 kcal Electronic energy + Delta-G solvation = -27344.489026 eV Core-core repulsion = 23328.367779 eV Total energy + Delta-G solvation = -4016.121248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.32208 -42.19583 -40.58909 -39.41789 -37.53405 -36.93436 -34.58765 -33.35857 -32.54826 -31.82947 -29.74457 -28.77677 -27.60712 -26.44119 -25.19764 -24.14236 -23.69888 -23.11925 -20.97369 -20.64039 -19.88892 -19.39395 -18.63933 -18.46120 -18.26165 -17.47097 -17.09543 -16.75836 -16.30929 -16.13836 -15.95701 -15.67636 -15.59583 -15.18560 -15.02747 -14.51552 -14.26239 -13.79926 -13.62537 -12.99709 -12.92871 -12.85687 -12.75370 -12.63609 -12.51351 -12.35384 -12.30597 -12.24518 -12.20473 -11.93917 -11.84688 -11.57299 -11.41259 -11.09436 -10.61245 -10.49937 -9.68337 -9.09347 -8.17058 -6.36085 -1.27525 -0.24084 0.16582 0.35046 1.37464 1.38499 1.46307 1.65637 1.96161 2.28265 2.36480 2.91975 3.08932 3.12790 3.27867 3.33921 3.57433 3.85108 3.91483 4.04734 4.19608 4.26056 4.27897 4.29977 4.33789 4.42588 4.58167 4.61894 4.69780 4.76784 4.96287 5.01757 5.13972 5.19071 5.23107 5.32566 5.40645 5.64563 5.73259 5.78635 5.99699 6.19497 6.40351 6.44026 6.57611 6.83868 7.35763 8.85654 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.002760 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.906663 B =10143.021649 C =10746.112686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.291 6.291 3 C 0.254 3.746 4 C -0.278 4.278 5 C 0.392 3.608 6 N -0.476 5.476 7 C 0.072 3.928 8 C 0.062 3.938 9 N -0.544 5.544 10 C 0.202 3.798 11 C -0.556 4.556 12 H 0.059 0.941 13 C 0.014 3.986 14 N -0.926 5.926 15 Si 0.954 3.046 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.268 1.268 19 C 0.061 3.939 20 C 0.081 3.919 21 N -0.540 5.540 22 C 0.250 3.750 23 C -0.184 4.184 24 N 0.052 4.948 25 O -0.184 6.184 26 O -0.178 6.178 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.186 0.814 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.004 0.996 36 H 0.012 0.988 37 H 0.265 0.735 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 -19.514 0.542 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.199 6.199 3 C 0.197 3.803 4 C -0.302 4.302 5 C 0.162 3.838 6 N -0.190 5.190 7 C -0.052 4.052 8 C -0.066 4.066 9 N -0.268 5.268 10 C 0.075 3.925 11 C -0.595 4.595 12 H 0.077 0.923 13 C -0.186 4.186 14 N -0.565 5.565 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.193 1.193 19 C -0.068 4.068 20 C -0.045 4.045 21 N -0.259 5.259 22 C 0.087 3.913 23 C -0.275 4.275 24 N 0.563 4.437 25 O -0.394 6.394 26 O -0.390 6.390 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.150 0.850 30 H 0.203 0.797 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.022 0.978 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 5.830 -18.111 0.454 19.031 hybrid contribution -1.176 -0.269 0.958 1.541 sum 4.654 -18.380 1.412 19.012 Atomic orbital electron populations 1.23771 0.74129 1.07249 1.03749 1.86388 1.25322 1.23609 1.84563 1.18791 0.89086 0.86863 0.85575 1.21724 1.03441 0.88571 1.16493 1.20169 0.88155 0.90810 0.84713 1.59055 1.18218 1.00920 1.40813 1.22512 0.94102 0.99588 0.88980 1.22004 0.94379 0.88799 1.01443 1.62667 1.19500 1.03420 1.41198 1.19379 0.91229 0.86753 0.95143 1.21933 1.21145 1.08723 1.07692 0.92336 1.25770 0.98529 0.95185 0.99075 1.70044 1.37655 1.12603 1.36219 0.85669 0.78815 0.77706 0.79866 1.19798 1.21008 1.19253 1.22037 0.95002 0.96907 0.92813 1.22098 0.93001 0.86187 1.03233 1.68198 1.06236 1.29710 1.21721 1.22858 1.02464 0.82890 0.83091 1.21748 0.89000 0.86948 1.29780 1.43274 1.01062 1.02390 0.96931 1.94505 0.96197 1.93830 1.54896 1.94570 1.75915 1.14059 1.54432 0.90370 0.89947 0.84978 0.79661 0.91930 0.86508 0.94636 0.90182 0.97816 0.97028 0.92604 0.95371 0.90800 0.88671 0.91822 0.77398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.84 113.37 1.12 1.15 16 2 O -0.29 -5.28 8.66 -70.11 -0.61 -5.88 16 3 C 0.25 4.98 6.71 22.73 0.15 5.13 16 4 C -0.28 -4.83 8.21 22.59 0.19 -4.65 16 5 C 0.39 8.50 6.40 132.95 0.85 9.36 16 6 N -0.48 -11.76 4.73 -701.51 -3.32 -15.08 16 7 C 0.07 1.69 5.37 86.31 0.46 2.15 16 8 C 0.06 2.04 5.24 86.31 0.45 2.49 16 9 N -0.54 -21.03 4.92 -900.28 -4.43 -25.46 16 10 C 0.20 9.90 5.14 85.56 0.44 10.34 16 11 C -0.56 -28.92 7.66 25.60 0.20 -28.73 16 12 H 0.06 2.99 5.82 -2.91 -0.02 2.97 16 13 C 0.01 0.76 5.46 84.65 0.46 1.22 16 14 N -0.93 -53.05 13.29 21.45 0.28 -52.76 16 15 Si 0.95 41.96 29.54 68.60 2.03 43.98 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 19 C 0.06 2.14 5.32 86.31 0.46 2.60 16 20 C 0.08 2.22 4.78 86.31 0.41 2.63 16 21 N -0.54 -11.87 8.70 -193.49 -1.68 -13.55 16 22 C 0.25 4.89 10.70 84.57 0.91 5.79 16 23 C -0.18 -4.05 6.89 36.57 0.25 -3.80 16 24 N 0.05 1.35 4.45 -46.00 -0.20 1.14 16 25 O -0.18 -4.82 18.46 18.89 0.35 -4.47 16 26 O -0.18 -5.06 17.36 25.45 0.44 -4.61 16 27 H 0.08 0.52 7.71 -2.39 -0.02 0.50 16 28 H 0.08 0.46 7.71 -2.39 -0.02 0.44 16 29 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.19 2.23 5.57 -2.91 -0.02 2.21 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.12 1.90 6.78 -2.39 -0.02 1.89 16 33 H 0.04 1.31 6.62 -2.39 -0.02 1.29 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.00 0.20 8.12 -2.39 -0.02 0.18 16 36 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.03 1.10 6.78 -2.39 -0.02 1.09 16 39 H 0.07 2.60 8.12 -2.39 -0.02 2.59 16 40 H 0.10 2.45 7.83 -2.38 -0.02 2.43 16 41 H 0.06 1.74 8.05 -2.39 -0.02 1.72 16 42 H 0.21 3.06 7.60 -2.91 -0.02 3.03 16 Total: -1.00 -65.35 346.71 0.26 -65.09 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.06 Total: 5.92 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 6.35 Total: 5.69 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -9.35 Total: -105.71 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.18 Total: -14.96 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -65.35 0.26 -65.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.185 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds