Wall clock time and date at job start Tue Mar 31 2020 13:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35669 * 117.00506 * 2 1 4 4 N 1.32358 * 119.63267 * 0.27510 * 3 2 1 5 5 C 1.32458 * 121.54344 * 180.28528 * 4 3 2 6 6 N 1.38995 * 119.67081 * 179.71052 * 5 4 3 7 7 C 1.46959 * 110.99641 * 359.72844 * 6 5 4 8 8 C 1.53058 * 109.36419 * 183.18917 * 7 6 5 9 9 N 1.46955 * 109.36051 * 301.59955 * 8 7 6 10 10 C 1.46906 * 110.99744 * 183.18754 * 9 8 7 11 11 C 1.50703 * 109.47109 * 169.99905 * 10 9 8 12 12 H 1.08005 * 119.99876 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99989 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99944 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99770 * 15 13 11 18 18 H 1.48498 * 109.46997 * 329.99580 * 15 13 11 19 19 C 1.46959 * 110.88319 * 59.32174 * 9 8 7 20 20 C 1.46959 * 111.00211 * 123.52793 * 6 5 4 21 21 C 1.39026 * 120.66319 * 359.43685 * 5 4 3 22 22 C 1.38455 * 119.22016 * 0.27429 * 21 5 4 23 23 C 1.38634 * 118.56511 * 0.02562 * 22 21 5 24 24 N 1.48007 * 120.36130 * 180.02562 * 23 22 21 25 25 O 1.21802 * 119.99593 * 359.97438 * 24 23 22 26 26 O 1.21799 * 120.00254 * 179.97438 * 24 23 22 27 27 H 1.09002 * 109.46903 * 300.00295 * 1 2 3 28 28 H 1.09008 * 109.47164 * 59.99745 * 1 2 3 29 29 H 1.08998 * 109.47259 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.48972 * 63.22092 * 7 6 5 31 31 H 1.08993 * 109.50763 * 303.16801 * 7 6 5 32 32 H 1.08994 * 109.48935 * 181.63483 * 8 7 6 33 33 H 1.08999 * 109.48934 * 61.56553 * 8 7 6 34 34 H 1.08992 * 109.47459 * 289.99824 * 10 9 8 35 35 H 1.09004 * 109.47040 * 49.99975 * 10 9 8 36 36 H 0.96997 * 119.99752 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.48972 * 60.64434 * 19 9 8 38 38 H 1.08998 * 109.48999 * 180.71033 * 19 9 8 39 39 H 1.08999 * 109.48803 * 296.78107 * 20 6 5 40 40 H 1.09000 * 109.48812 * 56.82743 * 20 6 5 41 41 H 1.08000 * 120.39301 * 180.29461 * 21 5 4 42 42 H 1.07992 * 120.71755 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3172 2.3142 0.0055 5 6 1.8789 3.5138 0.0001 6 7 1.0770 4.6491 0.0001 7 6 -0.3475 4.2876 0.0001 8 6 -1.1940 5.5602 -0.0802 9 7 -0.8745 6.4306 1.0599 10 6 -1.7221 7.6305 1.0600 11 6 -1.5436 8.3716 2.3600 12 1 -0.8678 7.9896 3.1109 13 6 -2.2431 9.5371 2.5908 14 7 -3.0657 10.0024 1.6761 15 14 -2.0214 10.4560 4.2019 16 1 -0.9170 11.4390 4.0633 17 1 -3.2788 11.1690 4.5422 18 1 -1.6922 9.4906 5.2811 19 6 0.5500 6.7921 1.0600 20 6 1.3964 5.5196 1.1403 21 6 3.2626 3.6487 0.0001 22 6 4.0526 2.5117 0.0001 23 6 3.4309 1.2726 -0.0005 24 7 4.2369 0.0312 0.0000 25 8 5.4532 0.0949 0.0005 26 8 3.6839 -1.0540 -0.0001 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.5861 3.7494 0.9174 31 1 -0.5620 3.6533 -0.8599 32 1 -2.2511 5.2962 -0.0511 33 1 -0.9752 6.0844 -1.0104 34 1 -1.4360 8.2775 0.2308 35 1 -2.7662 7.3378 0.9490 36 1 -3.5575 10.8226 1.8384 37 1 0.7886 7.3303 0.1427 38 1 0.7642 7.4262 1.9202 39 1 1.1776 4.9954 2.0705 40 1 2.4537 5.7833 1.1114 41 1 3.7160 4.6290 0.0005 42 1 5.1298 2.5884 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:55 Heat of formation + Delta-G solvation = 25.909367 kcal Electronic energy + Delta-G solvation = -27258.002601 eV Core-core repulsion = 23242.784089 eV Total energy + Delta-G solvation = -4015.218512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.34228 -41.27530 -39.55469 -38.09504 -36.48181 -35.46570 -33.27168 -32.65697 -31.27284 -30.74913 -28.45345 -27.82569 -26.26978 -24.87410 -24.31000 -23.00382 -22.57851 -21.66071 -19.73909 -19.62925 -18.80222 -18.69213 -17.66110 -17.54895 -16.55677 -16.42825 -16.39018 -15.21292 -15.03589 -14.86274 -14.56511 -14.46389 -14.18235 -14.13108 -13.78158 -13.58481 -13.24200 -12.39545 -12.28135 -12.01376 -11.74647 -11.59049 -11.44164 -11.32911 -11.21979 -11.12499 -11.01888 -11.00161 -10.86863 -10.69946 -10.58172 -10.38030 -9.96636 -9.79428 -9.33516 -8.64721 -8.56017 -7.50366 -6.15499 -4.18136 -0.32676 0.59123 1.14972 1.32380 2.33593 2.83028 3.14246 3.22635 3.29967 3.33048 3.73629 4.02292 4.29697 4.30032 4.43369 4.64446 4.82743 4.89626 4.97010 5.07501 5.12161 5.15161 5.20239 5.25596 5.30511 5.42517 5.50289 5.55165 5.65847 5.81867 6.13802 6.21894 6.24104 6.29015 6.38010 6.47242 6.71814 7.07288 7.15282 7.15501 7.62284 7.65581 7.87330 7.98855 8.34487 8.88688 9.47000 10.95224 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.002601 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.306498 B =10762.695870 C =11277.732622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.273 6.273 3 C 0.422 3.578 4 N -0.567 5.567 5 C 0.412 3.588 6 N -0.468 5.468 7 C 0.068 3.932 8 C 0.051 3.949 9 N -0.539 5.539 10 C 0.194 3.806 11 C -0.512 4.512 12 H 0.063 0.937 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.064 3.936 20 C 0.061 3.939 21 C -0.226 4.226 22 C 0.040 3.960 23 C -0.164 4.164 24 N 0.050 4.950 25 O -0.188 6.188 26 O -0.147 6.147 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.034 0.966 34 H -0.006 1.006 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.036 0.964 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.162 0.838 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.280 -14.968 -4.629 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.176 6.176 3 C 0.237 3.763 4 N -0.300 5.300 5 C 0.177 3.823 6 N -0.183 5.183 7 C -0.058 4.058 8 C -0.078 4.078 9 N -0.264 5.264 10 C 0.070 3.930 11 C -0.551 4.551 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.065 4.065 20 C -0.063 4.063 21 C -0.249 4.249 22 C 0.014 3.986 23 C -0.254 4.254 24 N 0.565 4.435 25 O -0.395 6.395 26 O -0.366 6.366 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.012 0.988 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.180 0.820 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.921 -14.467 -4.634 17.616 hybrid contribution 0.755 0.608 0.478 1.081 sum 9.676 -13.858 -4.156 17.406 Atomic orbital electron populations 1.23120 0.75827 1.04086 1.03182 1.86565 1.23998 1.22246 1.84790 1.19164 0.86529 0.85924 0.84635 1.67721 1.38401 0.97547 1.26330 1.20066 0.90889 0.87359 0.83971 1.59183 1.07287 1.11323 1.40486 1.22256 0.82979 0.97854 1.02754 1.22188 0.99072 0.92968 0.93600 1.62354 1.03580 1.20980 1.39516 1.19722 0.91998 0.84459 0.96853 1.21111 1.25545 1.06886 1.01557 0.91874 1.24990 0.95122 0.97353 0.97027 1.69950 1.27437 1.22114 1.34064 0.86496 0.77561 0.79788 0.83580 1.20661 1.21185 1.19757 1.22073 0.88642 0.93438 1.02309 1.22631 1.00855 0.94016 0.88834 1.21515 0.91822 1.00214 1.11352 1.21161 1.02379 0.88139 0.86895 1.20980 0.88686 0.86671 1.29060 1.43094 1.00932 1.02115 0.97364 1.94513 0.95644 1.93929 1.55432 1.94579 1.74270 1.14746 1.52959 0.91452 0.91577 0.87525 0.91753 0.89756 0.89978 0.94790 0.98832 0.94969 0.92775 0.94586 0.88254 0.91970 0.89425 0.82012 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.38 101.05 1.05 1.32 16 2 O -0.27 -3.22 8.50 -40.80 -0.35 -3.56 16 3 C 0.42 5.15 7.47 -17.14 -0.13 5.03 16 4 N -0.57 -6.78 7.55 -12.51 -0.09 -6.88 16 5 C 0.41 4.72 6.40 -155.02 -0.99 3.73 16 6 N -0.47 -5.85 4.73 -173.06 -0.82 -6.67 16 7 C 0.07 0.90 4.78 -3.76 -0.02 0.88 16 8 C 0.05 0.81 5.61 -3.76 -0.02 0.79 16 9 N -0.54 -10.33 4.70 -235.91 -1.11 -11.44 16 10 C 0.19 4.67 4.72 -4.97 -0.02 4.65 16 11 C -0.51 -13.41 8.47 -34.44 -0.29 -13.70 16 12 H 0.06 1.62 7.13 -52.48 -0.37 1.24 16 13 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -25.48 13.29 55.43 0.74 -24.74 16 15 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 C 0.06 1.06 5.43 -3.77 -0.02 1.04 16 20 C 0.06 0.76 5.37 -3.77 -0.02 0.74 16 21 C -0.23 -2.07 9.21 -39.21 -0.36 -2.43 16 22 C 0.04 0.37 9.66 -39.36 -0.38 -0.01 16 23 C -0.16 -1.98 6.89 -79.62 -0.55 -2.53 16 24 N 0.05 0.69 4.45 34.12 0.15 0.84 16 25 O -0.19 -2.60 18.52 -29.46 -0.55 -3.14 16 26 O -0.15 -2.18 17.26 -36.48 -0.63 -2.81 16 27 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.07 0.53 8.11 -51.92 -0.42 0.11 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.89 8.04 -51.93 -0.42 0.48 16 31 H 0.08 1.03 7.83 -51.93 -0.41 0.62 16 32 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 35 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.75 6.79 -51.93 -0.35 1.40 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.85 6.78 -51.93 -0.35 0.49 16 41 H 0.16 1.11 7.17 -52.49 -0.38 0.74 16 42 H 0.17 1.16 7.69 -52.49 -0.40 0.76 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -30.27 352.42 -9.83 -40.10 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.61 Total: -3.48 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.85 Total: 0.94 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -1.13 Total: -48.89 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -1.52 Total: -9.52 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.27 -9.83 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.010 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds