Wall clock time and date at job start Tue Mar 31 2020 13:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35669 * 117.00506 * 2 1 4 4 N 1.32358 * 119.63267 * 0.27510 * 3 2 1 5 5 C 1.32458 * 121.54344 * 180.28528 * 4 3 2 6 6 N 1.38995 * 119.67081 * 179.71052 * 5 4 3 7 7 C 1.46959 * 110.99641 * 359.72844 * 6 5 4 8 8 C 1.53058 * 109.36419 * 183.18917 * 7 6 5 9 9 N 1.46955 * 109.36051 * 301.59955 * 8 7 6 10 10 C 1.46906 * 110.99744 * 183.18754 * 9 8 7 11 11 C 1.50703 * 109.47109 * 169.99905 * 10 9 8 12 12 H 1.08005 * 119.99876 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99989 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99944 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99770 * 15 13 11 18 18 H 1.48498 * 109.46997 * 329.99580 * 15 13 11 19 19 C 1.46959 * 110.88319 * 59.32174 * 9 8 7 20 20 C 1.46959 * 111.00211 * 123.52793 * 6 5 4 21 21 C 1.39026 * 120.66319 * 359.43685 * 5 4 3 22 22 C 1.38455 * 119.22016 * 0.27429 * 21 5 4 23 23 C 1.38634 * 118.56511 * 0.02562 * 22 21 5 24 24 N 1.48007 * 120.36130 * 180.02562 * 23 22 21 25 25 O 1.21802 * 119.99593 * 359.97438 * 24 23 22 26 26 O 1.21799 * 120.00254 * 179.97438 * 24 23 22 27 27 H 1.09002 * 109.46903 * 300.00295 * 1 2 3 28 28 H 1.09008 * 109.47164 * 59.99745 * 1 2 3 29 29 H 1.08998 * 109.47259 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.48972 * 63.22092 * 7 6 5 31 31 H 1.08993 * 109.50763 * 303.16801 * 7 6 5 32 32 H 1.08994 * 109.48935 * 181.63483 * 8 7 6 33 33 H 1.08999 * 109.48934 * 61.56553 * 8 7 6 34 34 H 1.08992 * 109.47459 * 289.99824 * 10 9 8 35 35 H 1.09004 * 109.47040 * 49.99975 * 10 9 8 36 36 H 0.96997 * 119.99752 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.48972 * 60.64434 * 19 9 8 38 38 H 1.08998 * 109.48999 * 180.71033 * 19 9 8 39 39 H 1.08999 * 109.48803 * 296.78107 * 20 6 5 40 40 H 1.09000 * 109.48812 * 56.82743 * 20 6 5 41 41 H 1.08000 * 120.39301 * 180.29461 * 21 5 4 42 42 H 1.07992 * 120.71755 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3172 2.3142 0.0055 5 6 1.8789 3.5138 0.0001 6 7 1.0770 4.6491 0.0001 7 6 -0.3475 4.2876 0.0001 8 6 -1.1940 5.5602 -0.0802 9 7 -0.8745 6.4306 1.0599 10 6 -1.7221 7.6305 1.0600 11 6 -1.5436 8.3716 2.3600 12 1 -0.8678 7.9896 3.1109 13 6 -2.2431 9.5371 2.5908 14 7 -3.0657 10.0024 1.6761 15 14 -2.0214 10.4560 4.2019 16 1 -0.9170 11.4390 4.0633 17 1 -3.2788 11.1690 4.5422 18 1 -1.6922 9.4906 5.2811 19 6 0.5500 6.7921 1.0600 20 6 1.3964 5.5196 1.1403 21 6 3.2626 3.6487 0.0001 22 6 4.0526 2.5117 0.0001 23 6 3.4309 1.2726 -0.0005 24 7 4.2369 0.0312 0.0000 25 8 5.4532 0.0949 0.0005 26 8 3.6839 -1.0540 -0.0001 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.5861 3.7494 0.9174 31 1 -0.5620 3.6533 -0.8599 32 1 -2.2511 5.2962 -0.0511 33 1 -0.9752 6.0844 -1.0104 34 1 -1.4360 8.2775 0.2308 35 1 -2.7662 7.3378 0.9490 36 1 -3.5575 10.8226 1.8384 37 1 0.7886 7.3303 0.1427 38 1 0.7642 7.4262 1.9202 39 1 1.1776 4.9954 2.0705 40 1 2.4537 5.7833 1.1114 41 1 3.7160 4.6290 0.0005 42 1 5.1298 2.5884 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:55 Heat of formation + Delta-G solvation = 5.760072 kcal Electronic energy + Delta-G solvation = -27258.876340 eV Core-core repulsion = 23242.784089 eV Total energy + Delta-G solvation = -4016.092251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.30320 -42.21467 -40.55887 -39.12667 -37.51916 -36.77713 -34.70195 -34.01927 -32.37311 -31.82732 -29.94927 -28.59432 -27.67644 -26.13414 -25.33894 -24.14683 -23.61879 -23.18972 -20.99407 -20.56314 -19.79235 -19.58592 -18.64882 -18.61534 -18.36461 -17.41135 -17.27380 -16.66828 -16.17251 -15.98789 -15.90196 -15.54730 -15.47691 -15.01693 -14.87821 -14.66424 -14.36544 -14.00535 -13.51010 -13.14078 -12.95092 -12.80103 -12.66751 -12.64097 -12.44362 -12.39762 -12.34568 -12.20749 -12.19396 -12.13463 -11.75303 -11.70484 -11.29465 -11.22657 -10.69867 -10.61270 -9.55605 -9.10583 -8.21318 -6.31463 -1.27138 -0.18549 0.16697 0.38030 1.42415 1.43735 1.54592 1.54777 1.94712 2.25810 2.39826 2.87114 3.11306 3.19533 3.20359 3.46989 3.65126 3.81800 3.99660 4.11918 4.23619 4.24557 4.31976 4.32904 4.34092 4.44460 4.57404 4.66912 4.72122 4.80494 4.85542 4.93602 4.95950 5.15124 5.20692 5.25256 5.34271 5.54884 5.63811 5.82569 6.02055 6.25291 6.26078 6.54522 6.58988 6.84507 7.38825 8.89785 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.002601 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.306498 B =10762.695870 C =11277.732622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.289 6.289 3 C 0.412 3.588 4 N -0.574 5.574 5 C 0.400 3.600 6 N -0.471 5.471 7 C 0.082 3.918 8 C 0.052 3.948 9 N -0.547 5.547 10 C 0.210 3.790 11 C -0.522 4.522 12 H 0.067 0.933 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.064 3.936 20 C 0.072 3.928 21 C -0.209 4.209 22 C 0.051 3.949 23 C -0.175 4.175 24 N 0.051 4.949 25 O -0.180 6.180 26 O -0.186 6.186 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.028 0.972 34 H -0.035 1.035 35 H 0.004 0.996 36 H 0.264 0.736 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.127 0.873 41 H 0.194 0.806 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.337 -15.061 -3.942 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.192 6.192 3 C 0.228 3.772 4 N -0.307 5.307 5 C 0.167 3.833 6 N -0.186 5.186 7 C -0.044 4.044 8 C -0.077 4.077 9 N -0.272 5.272 10 C 0.083 3.917 11 C -0.560 4.560 12 H 0.085 0.915 13 C -0.196 4.196 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.065 4.065 20 C -0.052 4.052 21 C -0.232 4.232 22 C 0.026 3.974 23 C -0.265 4.265 24 N 0.562 4.438 25 O -0.392 6.392 26 O -0.396 6.396 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.046 0.954 34 H -0.018 1.018 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.211 0.789 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 10.956 -14.646 -3.951 18.712 hybrid contribution 0.133 0.634 0.212 0.681 sum 11.089 -14.013 -3.739 18.256 Atomic orbital electron populations 1.23317 0.74372 1.05651 1.03110 1.86565 1.25544 1.22398 1.84668 1.19291 0.86831 0.86067 0.85030 1.67657 1.38761 0.97753 1.26563 1.20203 0.91736 0.86729 0.84653 1.59178 1.06731 1.12002 1.40728 1.22037 0.83400 0.95939 1.03066 1.22212 0.99776 0.93560 0.92109 1.62250 1.04709 1.18952 1.41257 1.19340 0.91391 0.85749 0.95173 1.21451 1.25230 1.07129 1.02204 0.91470 1.25894 0.94779 0.98394 1.00518 1.70083 1.28561 1.22701 1.36203 0.85408 0.77529 0.78520 0.79327 1.19693 1.21217 1.18808 1.22066 0.87407 0.95649 1.01333 1.22538 1.02011 0.91889 0.88794 1.21802 0.90515 1.01486 1.09392 1.21526 1.03773 0.86796 0.85306 1.21259 0.88684 0.86633 1.29918 1.43336 1.00993 1.02581 0.96934 1.94482 0.96048 1.94054 1.54595 1.94583 1.74333 1.15704 1.54951 0.91676 0.91381 0.85262 0.92271 0.88472 0.90331 0.95393 1.01759 0.97820 0.92727 0.95227 0.89630 0.92292 0.85497 0.78892 0.78420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.38 113.37 1.18 1.64 16 2 O -0.29 -6.61 8.50 -68.73 -0.58 -7.19 16 3 C 0.41 9.47 7.47 84.73 0.63 10.11 16 4 N -0.57 -12.64 7.55 -306.32 -2.31 -14.95 16 5 C 0.40 7.99 6.40 133.02 0.85 8.85 16 6 N -0.47 -10.62 4.73 -701.44 -3.32 -13.94 16 7 C 0.08 2.07 4.78 86.31 0.41 2.48 16 8 C 0.05 1.67 5.61 86.31 0.48 2.15 16 9 N -0.55 -21.17 4.70 -900.28 -4.23 -25.40 16 10 C 0.21 10.45 4.72 85.56 0.40 10.86 16 11 C -0.52 -27.68 8.47 25.60 0.22 -27.47 16 12 H 0.07 3.43 7.13 -2.91 -0.02 3.41 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.94 -54.33 13.29 21.45 0.28 -54.05 16 15 Si 0.97 42.10 29.54 68.60 2.03 44.13 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 19 C 0.06 2.05 5.43 86.31 0.47 2.52 16 20 C 0.07 1.61 5.37 86.31 0.46 2.07 16 21 C -0.21 -2.94 9.21 22.51 0.21 -2.74 16 22 C 0.05 0.76 9.66 22.42 0.22 0.98 16 23 C -0.17 -3.84 6.89 36.59 0.25 -3.59 16 24 N 0.05 1.33 4.45 -45.96 -0.20 1.13 16 25 O -0.18 -4.65 18.52 18.88 0.35 -4.30 16 26 O -0.19 -5.50 17.26 25.60 0.44 -5.06 16 27 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 28 H 0.07 1.03 8.11 -2.38 -0.02 1.01 16 29 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 31 H 0.10 2.22 7.83 -2.39 -0.02 2.20 16 32 H 0.08 2.52 8.07 -2.39 -0.02 2.51 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H -0.04 -1.93 8.12 -2.39 -0.02 -1.95 16 35 H 0.00 0.20 8.03 -2.38 -0.02 0.18 16 36 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 2.97 6.79 -2.39 -0.02 2.95 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.13 1.87 6.78 -2.39 -0.02 1.85 16 41 H 0.19 1.52 7.17 -2.91 -0.02 1.50 16 42 H 0.20 1.79 7.69 -2.91 -0.02 1.76 16 Total: -1.00 -67.24 352.42 -0.26 -67.50 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.04 Total: 3.68 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 6.25 Total: 8.46 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -9.78 Total: -107.21 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.21 Total: -16.56 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.24 -0.26 -67.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.261 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds