Wall clock time and date at job start Tue Mar 31 2020 13:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35551 * 117.00053 * 2 1 4 4 N 1.33039 * 120.46361 * 0.02562 * 3 2 1 5 5 C 1.31741 * 120.91142 * 180.02562 * 4 3 2 6 6 N 1.31757 * 121.89422 * 359.97438 * 5 4 3 7 7 C 1.33127 * 120.82903 * 0.02562 * 6 5 4 8 8 N 1.38606 * 120.49614 * 180.02562 * 7 6 5 9 9 C 1.46902 * 111.00075 * 53.81136 * 8 7 6 10 10 C 1.50696 * 109.47108 * 163.66003 * 9 8 7 11 11 H 1.08007 * 119.99534 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00272 * 179.72509 * 10 9 8 13 13 N 1.31511 * 120.00136 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99805 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46765 * 89.99838 * 14 12 10 16 16 H 1.48497 * 109.47050 * 209.99846 * 14 12 10 17 17 H 1.48503 * 109.46988 * 329.99964 * 14 12 10 18 18 C 1.46901 * 110.99764 * 289.85786 * 8 7 6 19 19 C 1.54275 * 110.02898 * 66.13083 * 18 8 7 20 20 C 1.54888 * 104.19451 * 217.10226 * 19 18 8 21 21 C 1.54896 * 102.74833 * 37.94315 * 20 19 18 22 22 C 1.53871 * 110.03485 * 308.96815 * 18 8 7 23 23 C 1.38876 * 120.46580 * 180.28476 * 3 2 1 24 24 N 1.48019 * 120.85697 * 0.02562 * 23 3 2 25 25 O 1.21799 * 120.00424 * 265.23759 * 24 23 3 26 26 O 1.21801 * 119.99597 * 85.24060 * 24 23 3 27 27 H 1.09004 * 109.47455 * 59.99294 * 1 2 3 28 28 H 1.08997 * 109.47428 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47118 * 299.99857 * 1 2 3 30 30 H 1.08001 * 119.05368 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46970 * 43.66081 * 9 8 7 32 32 H 1.08998 * 109.47312 * 283.66333 * 9 8 7 33 33 H 0.97001 * 119.99858 * 179.97438 * 13 12 10 34 34 H 1.08993 * 110.01872 * 187.57107 * 18 8 7 35 35 H 1.08993 * 110.48641 * 335.78176 * 19 18 8 36 36 H 1.08995 * 110.48257 * 98.42970 * 19 18 8 37 37 H 1.09001 * 110.75960 * 279.63685 * 20 19 18 38 38 H 1.08997 * 110.91780 * 156.32849 * 20 19 18 39 39 H 1.09002 * 110.48735 * 203.37556 * 21 20 19 40 40 H 1.09004 * 110.48350 * 80.73623 * 21 20 19 41 41 H 1.08995 * 110.03086 * 238.57338 * 22 18 8 42 42 H 1.09000 * 110.02937 * 359.97438 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 7 1.3288 2.3294 0.0005 5 6 1.9178 3.5078 0.0000 6 7 3.2296 3.6305 -0.0005 7 6 4.0153 2.5558 -0.0011 8 7 5.3946 2.6928 -0.0011 9 6 5.8385 3.5502 1.1062 10 6 7.3172 3.3611 1.3261 11 1 7.8718 2.6726 0.7057 12 6 7.9633 4.0709 2.3160 13 7 9.2537 3.9056 2.5083 14 14 7.0053 5.2664 3.3849 15 1 6.4849 4.5544 4.5797 16 1 7.8998 6.3702 3.8169 17 1 5.8697 5.8247 2.6077 18 6 5.8722 3.2091 -1.2908 19 6 5.3689 4.6521 -1.5014 20 6 5.0564 4.7279 -3.0166 21 6 4.4574 3.3305 -3.3124 22 6 5.2926 2.3689 -2.4422 23 6 3.4306 1.2917 -0.0059 24 7 4.2652 0.0693 -0.0130 25 8 4.6856 -0.3872 1.0351 26 8 4.5315 -0.4801 -1.0669 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.3077 4.3990 0.0009 31 1 5.2986 3.2800 2.0138 32 1 5.6380 4.5931 0.8611 33 1 9.7083 4.4052 3.2044 34 1 6.9614 3.1845 -1.3222 35 1 4.4667 4.8306 -0.9165 36 1 6.1452 5.3695 -1.2357 37 1 5.9687 4.8866 -3.5917 38 1 4.3287 5.5121 -3.2251 39 1 4.5684 3.0835 -4.3683 40 1 3.4079 3.2957 -3.0199 41 1 6.1006 1.9372 -3.0328 42 1 4.6572 1.5778 -2.0440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:10 Heat of formation + Delta-G solvation = 36.066617 kcal Electronic energy + Delta-G solvation = -29376.569329 eV Core-core repulsion = 25361.791269 eV Total energy + Delta-G solvation = -4014.778060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.37991 -41.13719 -39.75300 -38.35066 -36.08274 -35.39348 -33.15376 -32.86765 -31.95715 -28.90874 -28.05489 -27.99103 -27.16966 -26.20814 -23.73804 -23.25240 -21.82495 -20.40623 -20.16165 -19.20327 -18.98999 -18.45194 -18.13578 -16.96313 -16.80659 -16.45452 -16.17215 -15.59639 -15.51935 -14.89742 -14.47734 -14.25819 -14.04612 -13.73525 -13.23517 -12.79629 -12.63422 -12.32960 -12.17745 -12.06987 -11.82162 -11.36486 -11.18776 -10.97493 -10.94525 -10.89100 -10.72391 -10.67152 -10.61282 -10.56323 -10.41230 -10.30888 -10.08762 -9.79239 -9.63287 -9.40040 -8.68917 -8.24493 -6.15611 -4.15589 0.19603 0.58704 0.92734 1.57488 2.19372 3.14987 3.21219 3.28314 3.29792 3.34658 3.65506 3.92925 4.31675 4.45711 4.57349 4.79606 4.81390 4.85726 4.89826 5.04490 5.13486 5.15432 5.35116 5.66684 5.68779 5.72241 5.78314 5.91955 6.01547 6.03573 6.21481 6.25140 6.33257 6.40090 6.45539 6.55897 6.66263 6.71572 6.77695 7.23535 7.30310 7.52961 7.61639 7.98717 8.43625 8.91285 9.42408 10.96755 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.005642 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.107233 B = 4961.554642 C = 5469.307189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.295 6.295 3 C 0.414 3.586 4 N -0.571 5.571 5 C 0.369 3.631 6 N -0.543 5.543 7 C 0.458 3.542 8 N -0.488 5.488 9 C 0.172 3.828 10 C -0.515 4.515 11 H 0.085 0.915 12 C 0.078 3.922 13 N -0.890 5.890 14 Si 0.867 3.133 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.098 3.902 19 C -0.168 4.168 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.138 4.138 23 C -0.149 4.149 24 N 0.052 4.948 25 O -0.117 6.117 26 O -0.143 6.143 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.214 0.786 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.266 0.734 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.143 -0.856 -8.886 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.198 6.198 3 C 0.226 3.774 4 N -0.304 5.304 5 C 0.081 3.919 6 N -0.267 5.267 7 C 0.222 3.778 8 N -0.211 5.211 9 C 0.049 3.951 10 C -0.553 4.553 11 H 0.103 0.897 12 C -0.125 4.125 13 N -0.528 5.528 14 Si 0.694 3.306 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.190 1.190 18 C -0.008 4.008 19 C -0.207 4.207 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.176 4.176 23 C -0.238 4.238 24 N 0.584 4.416 25 O -0.345 6.345 26 O -0.363 6.363 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.638 -0.178 -8.712 20.574 hybrid contribution -0.334 0.473 0.706 0.913 sum -18.972 0.295 -8.006 20.594 Atomic orbital electron populations 1.23123 0.74984 1.04232 1.03347 1.86329 1.24913 1.22881 1.85696 1.19388 0.86111 0.86594 0.85277 1.68458 1.39484 0.98229 1.24191 1.25063 0.88748 0.93964 0.84104 1.69263 1.06290 1.31759 1.19351 1.20151 0.93107 0.84743 0.79792 1.60575 0.99261 1.54017 1.07252 1.20359 0.98091 0.90600 0.86070 1.20807 0.89854 1.25813 1.18802 0.89738 1.24777 0.94730 0.96424 0.96603 1.69864 1.08479 1.41661 1.32771 0.86974 0.80482 0.81550 0.81577 1.20032 1.20812 1.18952 1.22456 1.01738 0.92173 0.84403 1.23412 1.03569 0.97413 0.96303 1.22407 1.00267 0.96177 0.96729 1.22304 0.98392 0.95646 0.99367 1.22518 1.00243 0.98091 0.96741 1.21663 0.89083 0.88404 1.24629 1.42532 0.98694 0.99932 1.00419 1.94583 1.52643 1.65772 1.21466 1.94491 1.60930 1.60055 1.20791 0.91268 0.87450 0.91255 0.76947 0.96031 0.95877 0.92358 0.86832 0.87854 0.90870 0.91528 0.92051 0.91682 0.93178 0.90417 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.41 101.05 1.05 1.37 16 2 O -0.30 -4.00 10.30 -18.35 -0.19 -4.19 16 3 C 0.41 6.21 7.52 -16.79 -0.13 6.08 16 4 N -0.57 -7.20 9.38 -14.72 -0.14 -7.34 16 5 C 0.37 4.42 12.28 -92.23 -1.13 3.28 16 6 N -0.54 -8.50 7.18 -13.86 -0.10 -8.60 16 7 C 0.46 8.38 4.00 -154.73 -0.62 7.76 16 8 N -0.49 -10.18 4.30 -165.60 -0.71 -10.90 16 9 C 0.17 4.07 3.27 -4.98 -0.02 4.06 16 10 C -0.51 -14.21 9.22 -34.44 -0.32 -14.53 16 11 H 0.08 2.56 7.79 -52.48 -0.41 2.15 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 13 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 14 Si 0.87 20.90 27.47 -169.99 -4.67 16.23 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.26 -6.09 6.53 56.52 0.37 -5.72 16 18 C 0.10 1.81 2.92 -66.59 -0.19 1.62 16 19 C -0.17 -2.76 4.75 -25.07 -0.12 -2.88 16 20 C -0.12 -1.55 6.91 -24.74 -0.17 -1.73 16 21 C -0.12 -1.59 6.83 -25.07 -0.17 -1.76 16 22 C -0.14 -2.21 6.00 -25.62 -0.15 -2.37 16 23 C -0.15 -2.66 5.15 -79.32 -0.41 -3.07 16 24 N 0.05 1.03 3.90 34.27 0.13 1.16 16 25 O -0.12 -2.50 19.26 -29.46 -0.57 -3.06 16 26 O -0.14 -2.77 17.74 -29.46 -0.52 -3.29 16 27 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.54 8.12 -51.92 -0.42 0.12 16 30 H 0.21 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.02 0.53 7.41 -51.93 -0.38 0.15 16 32 H 0.02 0.54 5.48 -51.93 -0.28 0.26 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.11 2.32 7.45 -51.93 -0.39 1.93 16 35 H 0.10 1.73 4.64 -51.93 -0.24 1.49 16 36 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.17 4.12 -51.93 -0.21 0.96 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -31.88 345.42 -8.57 -40.46 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.31 Total: 0.24 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.47 Total: -0.07 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.04 Total: -51.52 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.28 Total: -10.55 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.88 -8.57 -40.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.523 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds